Wall clock time and date at job start Sun Mar 29 2020 22:05:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86799 * 120.00292 * 2 1 4 4 H 1.48498 * 109.47379 * 269.99798 * 3 2 1 5 5 H 1.48510 * 109.47139 * 29.99768 * 3 2 1 6 6 H 1.48501 * 109.47201 * 149.99386 * 3 2 1 7 7 C 1.37872 * 119.99994 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00399 * 180.02562 * 7 2 1 9 9 S 1.76204 * 120.00036 * 0.02562 * 7 2 1 10 10 O 1.42104 * 106.40169 * 66.45805 * 9 7 2 11 11 O 1.42103 * 106.39935 * 293.53700 * 9 7 2 12 12 N 1.65596 * 107.21942 * 179.97438 * 9 7 2 13 13 C 1.46505 * 120.00270 * 64.99955 * 12 9 7 14 14 C 1.52998 * 109.47025 * 165.00183 * 13 12 9 15 15 C 1.53042 * 113.14878 * 185.00266 * 14 13 12 16 16 S 1.81425 * 89.93235 * 211.82965 * 15 14 13 17 17 C 1.53039 * 113.15312 * 84.62545 * 14 13 12 18 18 H 0.97011 * 119.99505 * 0.02562 * 1 2 3 19 19 H 0.97006 * 119.99759 * 244.99668 * 12 9 7 20 20 H 1.08999 * 109.46509 * 44.99789 * 13 12 9 21 21 H 1.08991 * 109.46620 * 285.00073 * 13 12 9 22 22 H 1.09002 * 112.52349 * 314.80815 * 14 13 12 23 23 H 1.09002 * 113.14805 * 327.10916 * 15 14 13 24 24 H 1.09003 * 113.15177 * 96.55360 * 15 14 13 25 25 H 1.08997 * 113.14758 * 263.40323 * 17 14 13 26 26 H 1.08997 * 113.15183 * 32.84975 * 17 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7002 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 16 1.1234 -2.7200 0.0005 10 8 0.4518 -2.7955 -1.2495 11 8 0.4509 -2.7950 1.2501 12 7 2.2482 -3.9354 0.0005 13 6 3.1393 -4.1089 1.1504 14 6 3.8046 -5.4847 1.0770 15 6 4.6625 -5.8043 2.3033 16 16 5.7811 -6.7831 1.2630 17 6 5.0586 -5.5006 0.1999 18 1 -0.4850 0.8402 -0.0004 19 1 2.3170 -4.5325 -0.7608 20 1 2.5621 -4.0330 2.0719 21 1 3.9053 -3.3337 1.1365 22 1 3.0984 -6.2773 0.8296 23 1 5.1388 -4.9238 2.7344 24 1 4.1383 -6.4020 3.0491 25 1 4.8664 -5.8444 -0.8164 26 1 5.6110 -4.5613 0.2249 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000697952657.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:34 Heat of formation + Delta-G solvation = -106.240997 kcal Electronic energy + Delta-G solvation = -13163.432627 eV Core-core repulsion = 10687.039342 eV Total energy + Delta-G solvation = -2476.393285 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 237.028 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.64842 -37.32138 -36.08700 -35.17753 -34.43844 -28.21067 -27.26924 -26.82957 -21.81665 -20.85734 -19.28078 -18.19988 -17.79361 -16.94956 -16.83955 -16.05696 -15.90542 -15.27887 -14.70355 -14.30386 -13.95747 -13.81994 -13.31399 -13.12731 -12.98339 -12.53571 -12.48799 -12.41263 -12.36734 -12.26848 -11.68326 -11.21489 -11.02345 -10.89019 -10.14284 -8.82233 -8.71328 -7.43681 0.39620 0.86816 0.97084 1.38015 1.38608 1.54008 2.24120 2.62644 3.00617 3.40543 3.71875 3.81215 3.97013 4.22251 4.45157 4.50672 4.59470 4.69122 4.74883 4.84161 5.07837 5.23437 5.37225 5.94968 6.45679 6.83390 8.24651 Molecular weight = 237.03amu Principal moments of inertia in cm(-1) A = 0.037852 B = 0.006978 C = 0.006343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.541055 B = 4011.629815 C = 4413.236437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.069 3.931 3 Si 0.989 3.011 4 H -0.258 1.258 5 H -0.267 1.267 6 H -0.244 1.244 7 C -1.039 5.039 8 H 0.125 0.875 9 S 2.722 3.278 10 O -1.047 7.047 11 O -1.043 7.043 12 N -1.119 6.119 13 C 0.131 3.869 14 C -0.091 4.091 15 C -0.061 4.061 16 S -0.354 6.354 17 C -0.066 4.066 18 H 0.298 0.702 19 H 0.416 0.584 20 H 0.075 0.925 21 H 0.081 0.919 22 H 0.120 0.880 23 H 0.124 0.876 24 H 0.111 0.889 25 H 0.105 0.895 26 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.934 -6.615 2.657 13.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.143 4.143 3 Si 0.808 3.192 4 H -0.183 1.183 5 H -0.191 1.191 6 H -0.167 1.167 7 C -1.172 5.172 8 H 0.143 0.857 9 S 2.823 3.177 10 O -1.037 7.037 11 O -1.033 7.033 12 N -0.879 5.879 13 C 0.002 3.998 14 C -0.113 4.113 15 C -0.209 4.209 16 S -0.128 6.128 17 C -0.214 4.214 18 H 0.108 0.892 19 H 0.251 0.749 20 H 0.094 0.906 21 H 0.099 0.901 22 H 0.138 0.862 23 H 0.142 0.858 24 H 0.129 0.871 25 H 0.124 0.876 26 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 10.743 -7.732 2.849 13.539 hybrid contribution -0.102 1.568 -0.431 1.629 sum 10.641 -6.164 2.418 12.533 Atomic orbital electron populations 1.70000 1.08828 1.32228 1.41640 1.25994 0.95306 1.05402 0.87637 0.85138 0.79283 0.74962 0.79844 1.18254 1.19133 1.16708 1.30932 1.07373 1.12501 1.66394 0.85741 0.99802 0.72578 0.73965 0.71380 1.93315 1.74986 1.88437 1.47004 1.93307 1.74502 1.88265 1.47232 1.55282 1.54983 1.49709 1.27963 1.21338 0.93245 0.96783 0.88409 1.22721 0.96291 0.98168 0.94101 1.24365 0.95523 1.01074 0.99986 1.89163 1.65188 1.42595 1.15883 1.24553 0.96054 0.98336 1.02434 0.89242 0.74946 0.90639 0.90105 0.86188 0.85775 0.87070 0.87591 0.86225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -52.28 13.19 21.44 0.28 -51.99 15 2 C 0.07 3.72 5.46 84.65 0.46 4.19 15 3 Si 0.99 39.72 29.54 68.60 2.03 41.75 15 4 H -0.26 -9.90 7.11 99.48 0.71 -9.19 15 5 H -0.27 -10.24 7.11 99.48 0.71 -9.54 15 6 H -0.24 -8.97 7.11 99.48 0.71 -8.27 15 7 C -1.04 -53.98 9.72 67.73 0.66 -53.32 15 8 H 0.12 5.66 7.81 -2.91 -0.02 5.64 15 9 S 2.72 138.04 5.02 -56.49 -0.28 137.75 15 10 O -1.05 -60.51 18.02 -128.00 -2.31 -62.81 15 11 O -1.04 -59.44 17.49 -128.00 -2.24 -61.68 15 12 N -1.12 -38.76 6.00 -187.49 -1.12 -39.89 15 13 C 0.13 3.57 6.00 86.38 0.52 4.08 15 14 C -0.09 -1.85 3.45 -10.77 -0.04 -1.89 15 15 C -0.06 -1.08 7.49 72.00 0.54 -0.54 15 16 S -0.35 -7.82 24.80 -56.49 -1.40 -9.22 15 17 C -0.07 -1.25 7.49 72.00 0.54 -0.71 15 18 H 0.30 15.65 8.31 -92.70 -0.77 14.88 15 19 H 0.42 12.15 8.65 -96.74 -0.84 11.32 15 20 H 0.08 2.22 7.75 -2.39 -0.02 2.20 15 21 H 0.08 1.99 7.89 -2.39 -0.02 1.97 15 22 H 0.12 2.38 8.14 -2.39 -0.02 2.36 15 23 H 0.12 1.88 8.12 -2.39 -0.02 1.86 15 24 H 0.11 1.75 8.14 -2.39 -0.02 1.73 15 25 H 0.11 1.85 8.14 -2.39 -0.02 1.83 15 26 H 0.12 2.04 7.94 -2.39 -0.02 2.03 15 Total: -1.00 -73.45 255.90 -2.01 -75.46 By element: Atomic # 1 Polarization: 18.47 SS G_CDS: 0.36 Total: 18.82 kcal Atomic # 6 Polarization: -50.87 SS G_CDS: 2.68 Total: -48.19 kcal Atomic # 7 Polarization: -91.04 SS G_CDS: -0.84 Total: -91.88 kcal Atomic # 8 Polarization: -119.95 SS G_CDS: -4.55 Total: -124.49 kcal Atomic # 14 Polarization: 39.72 SS G_CDS: 2.03 Total: 41.75 kcal Atomic # 16 Polarization: 130.22 SS G_CDS: -1.68 Total: 128.54 kcal Total: -73.45 -2.01 -75.46 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697952657.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.783 kcal (2) G-P(sol) polarization free energy of solvation -73.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds