Wall clock time and date at job start Sun Mar 29 2020 22:13:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.36773 * 120.00347 * 2 1 4 4 H 1.07996 * 120.00250 * 205.65537 * 3 2 1 5 5 C 1.39055 * 119.99584 * 25.65270 * 3 2 1 6 6 N 1.31367 * 120.00522 * 11.35639 * 5 3 2 7 7 Si 1.86806 * 119.99587 * 191.36019 * 5 3 2 8 8 H 1.48497 * 109.47038 * 359.97438 * 7 5 3 9 9 H 1.48496 * 109.47377 * 119.99862 * 7 5 3 10 10 H 1.48499 * 109.46903 * 239.99801 * 7 5 3 11 11 C 1.34783 * 119.99925 * 179.97438 * 2 1 3 12 12 O 1.21844 * 120.00072 * 179.97438 * 11 2 1 13 13 C 1.41274 * 119.99656 * 0.02562 * 11 2 1 14 14 C 1.35810 * 119.99637 * 180.02562 * 13 11 2 15 15 C 1.41501 * 119.99853 * 179.72649 * 14 13 11 16 16 C 1.37114 * 125.47890 * 179.97438 * 15 14 13 17 17 C 1.37419 * 113.21379 * 179.79228 * 16 15 14 18 18 C 1.33880 * 115.12852 * 0.49649 * 17 16 15 19 19 S 1.70606 * 111.02727 * 359.72235 * 18 17 16 20 20 H 1.08998 * 109.47547 * 264.88111 * 1 2 3 21 21 H 1.09000 * 109.47069 * 24.87921 * 1 2 3 22 22 H 1.09000 * 109.47256 * 144.87625 * 1 2 3 23 23 H 0.96997 * 120.00353 * 180.02562 * 6 5 3 24 24 H 1.07995 * 120.00022 * 359.97438 * 13 11 2 25 25 H 1.08004 * 119.99772 * 359.97438 * 14 13 11 26 26 H 1.08005 * 123.39281 * 359.95785 * 16 15 14 27 27 H 1.07995 * 122.43735 * 180.21830 * 17 16 15 28 28 H 1.08000 * 124.48547 * 179.74710 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1489 1.1844 0.0000 4 1 3.1490 1.2305 -0.4049 5 6 1.5564 2.3293 0.5214 6 7 0.4421 2.2366 1.2110 7 14 2.3449 3.9994 0.2410 8 1 3.5841 3.8334 -0.5602 9 1 1.3967 4.8782 -0.4895 10 1 2.6811 4.6141 1.5503 11 6 2.1388 -1.1673 0.0005 12 8 3.3573 -1.1673 0.0001 13 6 1.4324 -2.3907 0.0005 14 6 2.1114 -3.5668 0.0016 15 6 1.4039 -4.7922 0.0074 16 6 1.9729 -6.0397 0.0085 17 6 1.0486 -7.0566 0.0192 18 6 -0.2307 -6.6622 0.0161 19 16 -0.3465 -4.9600 0.0070 20 1 -0.3634 -0.0917 1.0235 21 1 -0.3633 0.9323 -0.4323 22 1 -0.3634 -0.8405 -0.5913 23 1 0.0286 3.0352 1.5743 24 1 0.3524 -2.3906 0.0005 25 1 3.1914 -3.5668 0.0020 26 1 3.0400 -6.2063 0.0043 27 1 1.3336 -8.0983 0.0250 28 1 -1.0774 -7.3327 0.0194 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000700851321.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:33 Heat of formation + Delta-G solvation = 5.257286 kcal Electronic energy + Delta-G solvation = -13848.945268 eV Core-core repulsion = 11377.776054 eV Total energy + Delta-G solvation = -2471.169214 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 237.056 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.60700 -38.83257 -36.82266 -34.83082 -33.68234 -30.00801 -28.25236 -26.88493 -25.39176 -23.12704 -20.67022 -20.07040 -18.92950 -18.32206 -17.47338 -16.85580 -16.17655 -16.02194 -15.82041 -14.73079 -14.30603 -14.13921 -13.81252 -13.54343 -13.48976 -13.19392 -13.13160 -12.80253 -12.65562 -12.33932 -12.11488 -11.62685 -11.33187 -11.05300 -10.48177 -9.73644 -9.48957 -8.96037 -8.41660 -6.01224 -0.71656 0.65845 0.90969 1.13889 1.39804 1.40320 1.54892 1.92568 2.25850 2.57949 3.13129 3.16061 3.99211 4.10585 4.24078 4.43960 4.47468 4.63775 4.72575 4.94931 5.02089 5.23637 5.28264 5.30401 5.38153 5.49274 5.59105 6.08320 6.45797 7.11429 7.38078 7.99886 8.61429 Molecular weight = 237.06amu Principal moments of inertia in cm(-1) A = 0.060673 B = 0.005262 C = 0.004897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 461.382158 B = 5319.424674 C = 5715.873107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.117 3.883 2 N -0.449 5.449 3 C -0.342 4.342 4 H 0.073 0.927 5 C -0.003 4.003 6 N -0.889 5.889 7 Si 0.996 3.004 8 H -0.273 1.273 9 H -0.261 1.261 10 H -0.273 1.273 11 C 0.456 3.544 12 O -0.649 6.649 13 C -0.204 4.204 14 C -0.006 4.006 15 C -0.213 4.213 16 C -0.106 4.106 17 C -0.149 4.149 18 C -0.240 4.240 19 S 0.185 5.815 20 H 0.046 0.954 21 H 0.064 0.936 22 H 0.065 0.935 23 H 0.278 0.722 24 H 0.134 0.866 25 H 0.126 0.874 26 H 0.159 0.841 27 H 0.168 0.832 28 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.063 -14.768 -2.183 16.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.026 4.026 2 N -0.165 5.165 3 C -0.470 4.470 4 H 0.091 0.909 5 C -0.206 4.206 6 N -0.526 5.526 7 Si 0.818 3.182 8 H -0.197 1.197 9 H -0.186 1.186 10 H -0.199 1.199 11 C 0.251 3.749 12 O -0.541 6.541 13 C -0.227 4.227 14 C -0.029 4.029 15 C -0.330 4.330 16 C -0.138 4.138 17 C -0.179 4.179 18 C -0.377 4.377 19 S 0.452 5.548 20 H 0.064 0.936 21 H 0.082 0.918 22 H 0.083 0.917 23 H 0.087 0.913 24 H 0.152 0.848 25 H 0.144 0.856 26 H 0.176 0.824 27 H 0.185 0.815 28 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -6.934 -13.589 -2.091 15.398 hybrid contribution 1.552 -0.001 0.100 1.555 sum -5.382 -13.589 -1.991 14.751 Atomic orbital electron populations 1.21521 0.79311 1.01014 1.00711 1.43843 1.06933 1.05013 1.60710 1.19722 1.01286 0.86387 1.39648 0.90912 1.26247 0.96998 1.03327 0.94003 1.70032 1.19465 1.31370 1.31777 0.84851 0.78398 0.76554 0.78371 1.19733 1.18574 1.19883 1.17418 0.87616 0.85472 0.84388 1.90598 1.15621 1.88412 1.59443 1.22051 1.00293 0.92335 1.08055 1.20532 0.99642 0.89522 0.93228 1.22678 0.97959 0.96914 1.15491 1.21287 1.02260 0.90163 1.00074 1.20243 0.91439 1.01726 1.04507 1.25649 1.02810 1.00099 1.09180 1.83209 1.02046 1.01428 1.68087 0.93571 0.91767 0.91688 0.91255 0.84819 0.85591 0.82380 0.81488 0.78975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.42 8.25 127.77 1.05 6.47 15 2 N -0.45 -24.75 3.00 -669.39 -2.01 -26.76 15 3 C -0.34 -20.22 9.21 84.12 0.77 -19.45 15 4 H 0.07 4.58 7.46 -2.91 -0.02 4.56 15 5 C 0.00 -0.16 5.06 84.96 0.43 0.27 15 6 N -0.89 -47.66 10.84 21.68 0.23 -47.43 15 7 Si 1.00 42.84 29.57 68.60 2.03 44.87 15 8 H -0.27 -11.92 7.11 99.48 0.71 -11.21 15 9 H -0.26 -10.42 7.11 99.48 0.71 -9.71 15 10 H -0.27 -11.43 7.11 99.48 0.71 -10.72 15 11 C 0.46 24.58 7.39 84.99 0.63 25.21 15 12 O -0.65 -39.72 15.83 -4.81 -0.08 -39.80 15 13 C -0.20 -8.57 8.56 22.45 0.19 -8.38 15 14 C -0.01 -0.23 9.37 22.51 0.21 -0.02 15 15 C -0.21 -6.18 6.21 22.81 0.14 -6.04 15 16 C -0.11 -2.47 10.25 21.81 0.22 -2.25 15 17 C -0.15 -2.73 10.15 21.08 0.21 -2.52 15 18 C -0.24 -4.31 10.92 66.83 0.73 -3.58 15 19 S 0.18 4.34 21.76 -56.49 -1.23 3.11 15 20 H 0.05 2.16 7.85 -2.39 -0.02 2.14 15 21 H 0.06 3.08 6.79 -2.39 -0.02 3.06 15 22 H 0.06 2.46 6.38 -2.39 -0.02 2.45 15 23 H 0.28 13.73 8.31 -92.71 -0.77 12.96 15 24 H 0.13 4.89 5.17 -2.91 -0.02 4.88 15 25 H 0.13 4.92 7.46 -2.91 -0.02 4.90 15 26 H 0.16 3.15 8.06 -2.91 -0.02 3.13 15 27 H 0.17 2.03 8.06 -2.91 -0.02 2.01 15 28 H 0.19 2.20 8.06 -2.91 -0.02 2.17 15 Total: -1.00 -70.38 261.26 4.72 -65.66 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: 1.17 Total: 10.61 kcal Atomic # 6 Polarization: -14.87 SS G_CDS: 4.60 Total: -10.27 kcal Atomic # 7 Polarization: -72.41 SS G_CDS: -1.77 Total: -74.18 kcal Atomic # 8 Polarization: -39.72 SS G_CDS: -0.08 Total: -39.80 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.87 kcal Atomic # 16 Polarization: 4.34 SS G_CDS: -1.23 Total: 3.11 kcal Total: -70.38 4.72 -65.66 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700851321.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.920 kcal (2) G-P(sol) polarization free energy of solvation -70.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.663 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds