Wall clock time and date at job start Sun Mar 29 2020 22:10:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 120.00034 * 2 1 4 4 H 1.48504 * 109.47580 * 270.00105 * 3 2 1 5 5 H 1.48500 * 109.46870 * 30.00086 * 3 2 1 6 6 H 1.48500 * 109.47062 * 149.99972 * 3 2 1 7 7 C 1.37876 * 120.00224 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00078 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00335 * 180.02562 * 7 2 1 10 10 N 1.46500 * 109.47497 * 179.97438 * 9 7 2 11 11 C 1.34775 * 120.00303 * 179.97438 * 10 9 7 12 12 O 1.21794 * 119.99733 * 0.02562 * 11 10 9 13 13 C 1.41474 * 120.00154 * 179.97438 * 11 10 9 14 14 C 1.35654 * 119.99713 * 173.28431 * 13 11 10 15 15 C 1.41589 * 120.00254 * 345.67710 * 14 13 11 16 16 C 1.37042 * 125.47044 * 131.52166 * 15 14 13 17 17 C 1.37435 * 113.21581 * 179.80085 * 16 15 14 18 18 C 1.33858 * 115.13130 * 0.49815 * 17 16 15 19 19 S 1.70609 * 111.01495 * 359.72408 * 18 17 16 20 20 H 0.97000 * 120.00319 * 359.97438 * 1 2 3 21 21 H 1.08999 * 109.47439 * 59.99509 * 9 7 2 22 22 H 1.08997 * 109.46990 * 299.99682 * 9 7 2 23 23 H 0.96998 * 119.99610 * 359.97438 * 10 9 7 24 24 H 1.07996 * 119.99878 * 353.28644 * 13 11 10 25 25 H 1.08000 * 119.99482 * 165.95981 * 14 13 11 26 26 H 1.07991 * 123.38859 * 359.97235 * 16 15 14 27 27 H 1.07998 * 122.43160 * 180.22302 * 17 16 15 28 28 H 1.08000 * 124.49164 * 179.74138 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1940 0.0000 10 7 3.9999 -2.5752 -0.0001 11 6 5.3250 -2.8215 -0.0001 12 8 6.1164 -1.8958 0.0004 13 6 5.7966 -4.1553 0.0003 14 6 7.1227 -4.4059 -0.1372 15 6 7.9945 -3.3819 -0.5800 16 6 9.1827 -3.0386 0.0102 17 6 9.8292 -2.0096 -0.6318 18 6 9.1927 -1.5181 -1.7019 19 16 7.7228 -2.3413 -1.9711 20 1 -0.4850 0.8400 0.0004 21 1 3.8746 -0.6808 0.8904 22 1 3.8752 -0.6797 -0.8895 23 1 3.3696 -3.3125 -0.0001 24 1 5.1009 -4.9740 0.1100 25 1 7.5127 -5.3877 0.0869 26 1 9.5731 -3.5293 0.8894 27 1 10.7794 -1.6226 -0.2945 28 1 9.5610 -0.7080 -2.3139 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000700852236.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:16 Heat of formation + Delta-G solvation = 23.008623 kcal Electronic energy + Delta-G solvation = -13957.456080 eV Core-core repulsion = 11487.056622 eV Total energy + Delta-G solvation = -2470.399458 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 237.056 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.36806 -37.49833 -34.47650 -33.41509 -32.34140 -29.08766 -27.60232 -24.62892 -22.87242 -21.16711 -19.68333 -19.25921 -17.65885 -16.47369 -15.98310 -15.30195 -15.02072 -14.42459 -13.98108 -13.84898 -12.98282 -12.78442 -12.53929 -12.41315 -12.25290 -12.05827 -11.81695 -10.98322 -10.76805 -10.59966 -9.96437 -9.68026 -9.47990 -9.19989 -8.77902 -8.40216 -7.88278 -7.62378 -6.20461 -4.22346 0.59252 1.74365 2.14250 2.40601 2.98668 3.27221 3.34035 3.42959 3.91857 4.23905 4.34856 5.04567 5.15122 5.23883 5.32811 5.54072 5.66209 5.76281 6.02017 6.27356 6.33087 6.57869 6.70449 6.87545 7.10489 7.27592 7.42201 8.16558 8.55296 8.76952 8.98074 9.40182 10.91605 Molecular weight = 237.06amu Principal moments of inertia in cm(-1) A = 0.036913 B = 0.006439 C = 0.005789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.361308 B = 4347.136591 C = 4835.200389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.077 3.923 3 Si 0.876 3.124 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.261 1.261 7 C -0.543 4.543 8 H 0.079 0.921 9 C 0.221 3.779 10 N -0.699 5.699 11 C 0.516 3.484 12 O -0.546 6.546 13 C -0.202 4.202 14 C -0.006 4.006 15 C -0.174 4.174 16 C -0.122 4.122 17 C -0.148 4.148 18 C -0.267 4.267 19 S 0.247 5.753 20 H 0.267 0.733 21 H 0.025 0.975 22 H 0.021 0.979 23 H 0.396 0.604 24 H 0.132 0.868 25 H 0.138 0.862 26 H 0.136 0.864 27 H 0.129 0.871 28 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.102 -8.254 -2.459 18.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.126 4.126 3 Si 0.703 3.297 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.185 1.185 7 C -0.581 4.581 8 H 0.097 0.903 9 C 0.098 3.902 10 N -0.347 5.347 11 C 0.305 3.695 12 O -0.428 6.428 13 C -0.226 4.226 14 C -0.028 4.028 15 C -0.292 4.292 16 C -0.153 4.153 17 C -0.180 4.180 18 C -0.405 4.405 19 S 0.518 5.482 20 H 0.077 0.923 21 H 0.043 0.957 22 H 0.039 0.961 23 H 0.229 0.771 24 H 0.150 0.850 25 H 0.155 0.845 26 H 0.154 0.846 27 H 0.147 0.853 28 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 15.326 -7.264 -3.586 17.335 hybrid contribution 1.071 0.577 1.241 1.738 sum 16.397 -6.687 -2.346 17.863 Atomic orbital electron populations 1.69880 1.06216 1.27392 1.49585 1.24795 0.94777 0.99161 0.93898 0.86821 0.80601 0.83263 0.79035 1.19850 1.20937 1.18504 1.21115 0.88632 0.95190 1.53154 0.90292 1.19462 0.95106 0.78878 0.96730 1.46195 1.05824 1.10995 1.71660 1.17210 0.83388 0.89662 0.79276 1.90910 1.54662 1.46736 1.50474 1.22431 0.96501 0.97592 1.06076 1.20606 0.91961 0.97164 0.93072 1.22405 0.99450 1.03690 1.03632 1.20572 0.94149 0.99470 1.01091 1.19753 1.01955 0.99151 0.97131 1.25138 1.01894 1.07944 1.05482 1.82966 1.16020 1.25799 1.23384 0.92292 0.95736 0.96110 0.77076 0.84985 0.84476 0.84634 0.85282 0.82666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.70 13.96 55.43 0.77 -25.92 15 2 C 0.08 2.20 5.47 -17.82 -0.10 2.11 15 3 Si 0.88 21.66 27.47 -169.99 -4.67 16.99 15 4 H -0.27 -6.63 7.11 56.52 0.40 -6.23 15 5 H -0.28 -6.87 7.11 56.52 0.40 -6.47 15 6 H -0.26 -6.44 6.54 56.52 0.37 -6.07 15 7 C -0.54 -15.01 9.83 -34.44 -0.34 -15.35 15 8 H 0.08 2.27 7.84 -52.48 -0.41 1.85 15 9 C 0.22 5.48 4.50 -5.19 -0.02 5.45 15 10 N -0.70 -14.32 5.54 -64.45 -0.36 -14.68 15 11 C 0.52 9.90 7.08 -15.03 -0.11 9.79 15 12 O -0.55 -12.04 12.34 5.10 0.06 -11.98 15 13 C -0.20 -2.88 9.79 -39.27 -0.38 -3.26 15 14 C -0.01 -0.08 9.86 -39.23 -0.39 -0.47 15 15 C -0.17 -2.58 4.33 -38.74 -0.17 -2.75 15 16 C -0.12 -1.69 10.25 -40.31 -0.41 -2.10 15 17 C -0.15 -2.00 10.14 -41.41 -0.42 -2.42 15 18 C -0.27 -3.75 10.92 29.19 0.32 -3.43 15 19 S 0.25 3.82 20.15 -107.50 -2.17 1.65 15 20 H 0.27 7.47 8.31 -40.82 -0.34 7.13 15 21 H 0.02 0.65 7.20 -51.93 -0.37 0.28 15 22 H 0.02 0.54 7.57 -51.93 -0.39 0.15 15 23 H 0.40 7.14 8.28 -40.82 -0.34 6.80 15 24 H 0.13 1.44 8.06 -52.49 -0.42 1.02 15 25 H 0.14 1.23 8.06 -52.49 -0.42 0.81 15 26 H 0.14 1.55 8.06 -52.49 -0.42 1.13 15 27 H 0.13 1.43 8.06 -52.49 -0.42 1.01 15 28 H 0.16 1.83 8.06 -52.49 -0.42 1.40 15 LS Contribution 261.87 15.07 3.95 3.95 Total: -1.00 -32.39 261.87 -7.23 -39.62 By element: Atomic # 1 Polarization: 5.61 SS G_CDS: -2.80 Total: 2.81 kcal Atomic # 6 Polarization: -10.42 SS G_CDS: -2.02 Total: -12.44 kcal Atomic # 7 Polarization: -41.02 SS G_CDS: 0.42 Total: -40.60 kcal Atomic # 8 Polarization: -12.04 SS G_CDS: 0.06 Total: -11.98 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.67 Total: 16.99 kcal Atomic # 16 Polarization: 3.82 SS G_CDS: -2.17 Total: 1.65 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -32.39 -7.23 -39.62 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700852236.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.629 kcal (2) G-P(sol) polarization free energy of solvation -32.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.620 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds