Wall clock time and date at job start Sun Mar 29 2020 22:10:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 120.00034 * 2 1 4 4 H 1.48504 * 109.47580 * 270.00105 * 3 2 1 5 5 H 1.48500 * 109.46870 * 30.00086 * 3 2 1 6 6 H 1.48500 * 109.47062 * 149.99972 * 3 2 1 7 7 C 1.37876 * 120.00224 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00078 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00335 * 180.02562 * 7 2 1 10 10 N 1.46500 * 109.47497 * 179.97438 * 9 7 2 11 11 C 1.34775 * 120.00303 * 179.97438 * 10 9 7 12 12 O 1.21794 * 119.99733 * 0.02562 * 11 10 9 13 13 C 1.41474 * 120.00154 * 179.97438 * 11 10 9 14 14 C 1.35654 * 119.99713 * 173.28431 * 13 11 10 15 15 C 1.41589 * 120.00254 * 345.67710 * 14 13 11 16 16 C 1.37042 * 125.47044 * 131.52166 * 15 14 13 17 17 C 1.37435 * 113.21581 * 179.80085 * 16 15 14 18 18 C 1.33858 * 115.13130 * 0.49815 * 17 16 15 19 19 S 1.70609 * 111.01495 * 359.72408 * 18 17 16 20 20 H 0.97000 * 120.00319 * 359.97438 * 1 2 3 21 21 H 1.08999 * 109.47439 * 59.99509 * 9 7 2 22 22 H 1.08997 * 109.46990 * 299.99682 * 9 7 2 23 23 H 0.96998 * 119.99610 * 359.97438 * 10 9 7 24 24 H 1.07996 * 119.99878 * 353.28644 * 13 11 10 25 25 H 1.08000 * 119.99482 * 165.95981 * 14 13 11 26 26 H 1.07991 * 123.38859 * 359.97235 * 16 15 14 27 27 H 1.07998 * 122.43160 * 180.22302 * 17 16 15 28 28 H 1.08000 * 124.49164 * 179.74138 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1940 0.0000 10 7 3.9999 -2.5752 -0.0001 11 6 5.3250 -2.8215 -0.0001 12 8 6.1164 -1.8958 0.0004 13 6 5.7966 -4.1553 0.0003 14 6 7.1227 -4.4059 -0.1372 15 6 7.9945 -3.3819 -0.5800 16 6 9.1827 -3.0386 0.0102 17 6 9.8292 -2.0096 -0.6318 18 6 9.1927 -1.5181 -1.7019 19 16 7.7228 -2.3413 -1.9711 20 1 -0.4850 0.8400 0.0004 21 1 3.8746 -0.6808 0.8904 22 1 3.8752 -0.6797 -0.8895 23 1 3.3696 -3.3125 -0.0001 24 1 5.1009 -4.9740 0.1100 25 1 7.5127 -5.3877 0.0869 26 1 9.5731 -3.5293 0.8894 27 1 10.7794 -1.6226 -0.2945 28 1 9.5610 -0.7080 -2.3139 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000700852236.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:15 Heat of formation + Delta-G solvation = 0.848395 kcal Electronic energy + Delta-G solvation = -13958.417020 eV Core-core repulsion = 11487.056622 eV Total energy + Delta-G solvation = -2471.360398 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 237.056 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.81837 -38.60754 -36.21556 -34.64259 -34.38526 -30.62775 -29.13826 -25.90203 -24.39558 -22.78652 -21.08708 -20.39273 -19.21130 -18.18973 -17.35797 -16.78521 -16.47177 -16.01339 -15.60308 -15.11724 -14.73176 -14.27361 -14.04780 -13.83112 -13.55358 -13.19592 -13.00811 -12.97583 -12.69307 -11.94424 -11.70275 -11.64974 -10.92903 -10.91854 -10.55643 -9.93244 -9.15855 -8.82709 -8.40632 -6.47123 -0.51029 0.65867 1.03980 1.30723 1.31822 1.33223 1.46220 1.91761 2.27171 2.54922 2.72995 2.95180 4.03632 4.20434 4.25227 4.55979 4.64213 4.73792 4.81130 4.98531 5.05356 5.24302 5.26200 5.35956 5.50819 5.58809 5.70098 6.11295 6.54238 6.93002 7.16347 7.49381 8.74293 Molecular weight = 237.06amu Principal moments of inertia in cm(-1) A = 0.036913 B = 0.006439 C = 0.005789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.361308 B = 4347.136591 C = 4835.200389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.026 3.974 3 Si 0.938 3.062 4 H -0.264 1.264 5 H -0.273 1.273 6 H -0.263 1.263 7 C -0.546 4.546 8 H 0.058 0.942 9 C 0.236 3.764 10 N -0.705 5.705 11 C 0.515 3.485 12 O -0.578 6.578 13 C -0.224 4.224 14 C 0.020 3.980 15 C -0.194 4.194 16 C -0.122 4.122 17 C -0.154 4.154 18 C -0.271 4.271 19 S 0.190 5.810 20 H 0.272 0.728 21 H 0.009 0.991 22 H 0.010 0.990 23 H 0.406 0.594 24 H 0.167 0.833 25 H 0.186 0.814 26 H 0.163 0.837 27 H 0.155 0.845 28 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.148 -8.979 -1.952 20.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.174 4.174 3 Si 0.761 3.239 4 H -0.189 1.189 5 H -0.198 1.198 6 H -0.187 1.187 7 C -0.584 4.584 8 H 0.076 0.924 9 C 0.112 3.888 10 N -0.354 5.354 11 C 0.306 3.694 12 O -0.462 6.462 13 C -0.247 4.247 14 C -0.001 4.001 15 C -0.312 4.312 16 C -0.153 4.153 17 C -0.186 4.186 18 C -0.408 4.408 19 S 0.461 5.539 20 H 0.081 0.919 21 H 0.026 0.974 22 H 0.028 0.972 23 H 0.242 0.758 24 H 0.185 0.815 25 H 0.203 0.797 26 H 0.180 0.820 27 H 0.173 0.827 28 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 17.378 -8.022 -3.083 19.387 hybrid contribution 0.553 0.754 1.081 1.429 sum 17.931 -7.268 -2.002 19.452 Atomic orbital electron populations 1.69981 1.07668 1.28579 1.50857 1.25597 0.95531 1.02642 0.93632 0.85856 0.79171 0.79395 0.79444 1.18937 1.19769 1.18709 1.21329 0.90128 0.94527 1.52423 0.92350 1.19001 0.93109 0.81378 0.95339 1.46046 1.06992 1.09459 1.72902 1.17948 0.82249 0.91464 0.77727 1.90893 1.55153 1.48349 1.51815 1.22397 0.97821 0.95660 1.08866 1.21148 0.90938 0.98426 0.89582 1.22759 1.00405 1.04277 1.03723 1.20996 0.93517 0.99243 1.01515 1.20161 1.02875 0.98897 0.96644 1.25403 1.01028 1.08258 1.06114 1.83147 1.17978 1.27508 1.25225 0.91863 0.97353 0.97229 0.75823 0.81508 0.79715 0.81950 0.82698 0.81001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.33 13.96 21.45 0.30 -56.03 15 2 C 0.03 1.50 5.47 84.66 0.46 1.96 15 3 Si 0.94 44.89 27.47 68.60 1.88 46.78 15 4 H -0.26 -12.22 7.11 99.48 0.71 -11.52 15 5 H -0.27 -12.48 7.11 99.48 0.71 -11.78 15 6 H -0.26 -12.57 6.54 99.48 0.65 -11.92 15 7 C -0.55 -30.70 9.83 25.60 0.25 -30.44 15 8 H 0.06 3.44 7.84 -2.91 -0.02 3.42 15 9 C 0.24 11.82 4.50 85.63 0.38 12.20 15 10 N -0.70 -28.81 5.54 -475.99 -2.64 -31.45 15 11 C 0.51 19.31 7.08 85.04 0.60 19.92 15 12 O -0.58 -25.29 12.34 -4.65 -0.06 -25.35 15 13 C -0.22 -5.83 9.79 22.47 0.22 -5.61 15 14 C 0.02 0.45 9.86 22.50 0.22 0.67 15 15 C -0.19 -5.33 4.33 22.82 0.10 -5.23 15 16 C -0.12 -3.01 10.25 21.80 0.22 -2.79 15 17 C -0.15 -3.79 10.14 21.08 0.21 -3.57 15 18 C -0.27 -7.25 10.92 66.82 0.73 -6.52 15 19 S 0.19 5.79 20.15 -56.49 -1.14 4.65 15 20 H 0.27 15.31 8.31 -92.71 -0.77 14.54 15 21 H 0.01 0.45 7.20 -2.39 -0.02 0.44 15 22 H 0.01 0.51 7.57 -2.39 -0.02 0.49 15 23 H 0.41 14.58 8.28 -92.71 -0.77 13.82 15 24 H 0.17 3.08 8.06 -2.91 -0.02 3.06 15 25 H 0.19 2.32 8.06 -2.91 -0.02 2.30 15 26 H 0.16 3.04 8.06 -2.91 -0.02 3.02 15 27 H 0.16 2.93 8.06 -2.91 -0.02 2.90 15 28 H 0.17 3.82 8.06 -2.91 -0.02 3.79 15 Total: -1.00 -70.34 261.87 2.11 -68.23 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: 0.35 Total: 12.57 kcal Atomic # 6 Polarization: -22.81 SS G_CDS: 3.41 Total: -19.40 kcal Atomic # 7 Polarization: -85.14 SS G_CDS: -2.34 Total: -87.47 kcal Atomic # 8 Polarization: -25.29 SS G_CDS: -0.06 Total: -25.35 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 1.88 Total: 46.78 kcal Atomic # 16 Polarization: 5.79 SS G_CDS: -1.14 Total: 4.65 kcal Total: -70.34 2.11 -68.23 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700852236.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.074 kcal (2) G-P(sol) polarization free energy of solvation -70.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.226 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds