Wall clock time and date at job start Sun Mar 29 2020 22:09:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86795 * 120.00185 * 2 1 4 4 H 1.48493 * 109.47639 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47140 * 299.99727 * 3 2 1 6 6 H 1.48502 * 109.47101 * 59.99322 * 3 2 1 7 7 C 1.37877 * 119.99967 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00015 * 180.02562 * 7 2 1 9 9 S 1.76200 * 120.00006 * 0.02562 * 7 2 1 10 10 O 1.42097 * 106.40317 * 66.45436 * 9 7 2 11 11 O 1.42097 * 106.39998 * 293.53168 * 9 7 2 12 12 N 1.65604 * 107.21806 * 179.97438 * 9 7 2 13 13 C 1.46925 * 120.63138 * 269.97613 * 12 9 7 14 14 C 1.53191 * 108.77423 * 233.62815 * 13 12 9 15 15 C 1.53037 * 109.31499 * 305.36620 * 14 13 12 16 16 C 1.53043 * 109.53919 * 61.36673 * 15 14 13 17 17 H 1.09000 * 109.49902 * 58.58363 * 16 15 14 18 18 F 1.39900 * 109.49715 * 178.68697 * 16 15 14 19 19 C 1.46926 * 120.62947 * 89.99924 * 12 9 7 20 20 H 0.97001 * 120.00126 * 0.02562 * 1 2 3 21 21 H 1.08998 * 109.58340 * 353.41770 * 13 12 9 22 22 H 1.09005 * 109.58474 * 113.84058 * 13 12 9 23 23 H 1.08997 * 109.49512 * 65.31959 * 14 13 12 24 24 H 1.08998 * 109.49723 * 185.41351 * 14 13 12 25 25 H 1.08997 * 109.46383 * 181.38282 * 15 14 13 26 26 H 1.09001 * 109.46057 * 301.34715 * 15 14 13 27 27 H 1.09006 * 109.58406 * 246.15760 * 19 12 9 28 28 H 1.09002 * 109.59019 * 6.57748 * 19 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 16 1.1235 -2.7200 0.0005 10 8 0.4518 -2.7955 -1.2494 11 8 0.4511 -2.7950 1.2501 12 7 2.2483 -3.9354 0.0005 13 6 2.7564 -4.4852 -1.2637 14 6 2.5725 -6.0060 -1.2492 15 6 3.2394 -6.5846 0.0008 16 6 2.5729 -6.0056 1.2510 17 1 1.5092 -6.2433 1.2394 18 9 3.1631 -6.5577 2.3929 19 6 2.7567 -4.4848 1.2648 20 1 -0.4850 0.8400 -0.0004 21 1 2.1999 -4.0578 -2.0978 22 1 3.8148 -4.2460 -1.3670 23 1 1.5089 -6.2437 -1.2373 24 1 3.0320 -6.4365 -2.1389 25 1 3.1313 -7.6692 0.0011 26 1 4.2981 -6.3253 0.0007 27 1 3.8152 -4.2456 1.3677 28 1 2.2007 -4.0571 2.0990 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701684011.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:54 Heat of formation + Delta-G solvation = -152.133154 kcal Electronic energy + Delta-G solvation = -15770.886730 eV Core-core repulsion = 12862.123330 eV Total energy + Delta-G solvation = -2908.763400 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 237.062 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -47.43928 -37.68787 -35.36635 -34.02229 -33.12304 -31.86353 -30.17102 -26.15516 -24.20452 -22.84798 -20.34822 -18.81834 -17.41254 -16.46913 -15.87583 -15.55195 -15.13473 -14.88818 -14.59660 -14.04643 -13.58225 -13.21973 -13.09706 -12.38337 -12.29024 -12.02873 -11.33232 -11.25403 -11.07327 -10.99132 -10.84072 -10.60560 -10.49241 -10.34960 -10.10045 -9.95647 -9.28567 -8.97160 -8.30377 -6.72949 -5.35374 2.16848 3.03900 3.12228 3.19549 4.02242 4.37688 4.60498 4.69426 4.79924 4.89306 5.06958 5.26345 5.58580 5.67648 5.74252 5.82160 5.86832 5.98415 6.03325 6.13936 6.18084 6.40000 6.44248 6.72125 7.29523 7.47369 7.94942 8.86183 10.20741 Molecular weight = 237.06amu Principal moments of inertia in cm(-1) A = 0.040077 B = 0.008520 C = 0.008255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.478790 B = 3285.724566 C = 3390.952837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.846 5.846 2 C 0.132 3.868 3 Si 0.922 3.078 4 H -0.262 1.262 5 H -0.271 1.271 6 H -0.271 1.271 7 C -1.019 5.019 8 H 0.103 0.897 9 S 2.713 3.287 10 O -1.001 7.001 11 O -1.002 7.002 12 N -1.009 6.009 13 C 0.118 3.882 14 C -0.131 4.131 15 C -0.140 4.140 16 C 0.076 3.924 17 H 0.086 0.914 18 F -0.215 7.215 19 C 0.103 3.897 20 H 0.291 0.709 21 H 0.098 0.902 22 H 0.061 0.939 23 H 0.070 0.930 24 H 0.077 0.923 25 H 0.070 0.930 26 H 0.073 0.927 27 H 0.070 0.930 28 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.854 -8.455 -1.021 10.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C -0.086 4.086 3 Si 0.745 3.255 4 H -0.186 1.186 5 H -0.196 1.196 6 H -0.196 1.196 7 C -1.153 5.153 8 H 0.121 0.879 9 S 2.815 3.185 10 O -0.991 6.991 11 O -0.992 6.992 12 N -0.844 5.844 13 C -0.008 4.008 14 C -0.170 4.170 15 C -0.178 4.178 16 C 0.038 3.962 17 H 0.104 0.896 18 F -0.196 7.196 19 C -0.025 4.025 20 H 0.101 0.899 21 H 0.116 0.884 22 H 0.079 0.921 23 H 0.088 0.912 24 H 0.095 0.905 25 H 0.089 0.911 26 H 0.092 0.908 27 H 0.088 0.912 28 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 5.748 -8.530 -0.999 10.335 hybrid contribution 1.054 1.151 0.086 1.563 sum 6.802 -7.380 -0.913 10.078 Atomic orbital electron populations 1.69900 1.06787 1.30704 1.40151 1.24768 0.94484 1.00880 0.88460 0.86114 0.80439 0.80314 0.78591 1.18614 1.19576 1.19572 1.30623 1.06190 1.11702 1.66772 0.87880 1.00597 0.72080 0.73008 0.72849 1.93351 1.72595 1.87510 1.45647 1.93354 1.72649 1.87504 1.45716 1.58200 1.62581 1.54415 1.09189 1.21325 0.99743 0.92940 0.86787 1.21869 1.01581 0.96404 0.97117 1.22055 1.00868 1.00499 0.94356 1.21985 0.97917 0.94418 0.81854 0.89583 1.92777 1.86450 1.87024 1.53321 1.21701 1.00983 0.91732 0.88058 0.89889 0.88390 0.92066 0.91168 0.90482 0.91108 0.90781 0.91180 0.87823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.68 13.19 55.43 0.73 -23.95 15 2 C 0.13 3.66 5.46 -17.82 -0.10 3.56 15 3 Si 0.92 20.43 29.54 -169.99 -5.02 15.41 15 4 H -0.26 -5.61 7.11 56.52 0.40 -5.21 15 5 H -0.27 -5.77 7.11 56.52 0.40 -5.37 15 6 H -0.27 -5.79 7.11 56.52 0.40 -5.39 15 7 C -1.02 -27.79 9.75 30.60 0.30 -27.49 15 8 H 0.10 2.59 7.81 -52.49 -0.41 2.18 15 9 S 2.71 70.75 5.01 -107.50 -0.54 70.21 15 10 O -1.00 -28.37 16.60 -57.17 -0.95 -29.31 15 11 O -1.00 -28.70 16.61 -57.17 -0.95 -29.65 15 12 N -1.01 -19.93 3.29 -113.52 -0.37 -20.31 15 13 C 0.12 1.91 6.48 -3.71 -0.02 1.89 15 14 C -0.13 -1.69 6.08 -26.61 -0.16 -1.86 15 15 C -0.14 -1.74 5.62 -26.69 -0.15 -1.89 15 16 C 0.08 1.14 4.03 -26.61 -0.11 1.04 15 17 H 0.09 1.29 8.14 -51.93 -0.42 0.87 15 18 F -0.21 -3.32 17.09 2.25 0.04 -3.28 15 19 C 0.10 1.78 6.21 -3.71 -0.02 1.76 15 20 H 0.29 7.59 8.31 -40.82 -0.34 7.26 15 21 H 0.10 1.70 6.91 -51.93 -0.36 1.34 15 22 H 0.06 0.86 8.14 -51.93 -0.42 0.44 15 23 H 0.07 0.95 8.14 -51.93 -0.42 0.53 15 24 H 0.08 0.79 8.14 -51.93 -0.42 0.37 15 25 H 0.07 0.76 8.14 -51.93 -0.42 0.34 15 26 H 0.07 0.86 8.14 -51.93 -0.42 0.44 15 27 H 0.07 1.08 8.14 -51.93 -0.42 0.66 15 28 H 0.10 1.95 6.92 -51.93 -0.36 1.59 15 LS Contribution 253.22 15.07 3.82 3.82 Total: -1.00 -33.29 253.22 -6.73 -40.02 By element: Atomic # 1 Polarization: 3.26 SS G_CDS: -3.22 Total: 0.03 kcal Atomic # 6 Polarization: -22.73 SS G_CDS: -0.27 Total: -22.99 kcal Atomic # 7 Polarization: -44.62 SS G_CDS: 0.36 Total: -44.26 kcal Atomic # 8 Polarization: -57.07 SS G_CDS: -1.90 Total: -58.97 kcal Atomic # 9 Polarization: -3.32 SS G_CDS: 0.04 Total: -3.28 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Atomic # 16 Polarization: 70.75 SS G_CDS: -0.54 Total: 70.21 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -33.29 -6.73 -40.02 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701684011.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.108 kcal (2) G-P(sol) polarization free energy of solvation -33.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds