Wall clock time and date at job start Sun Mar 29 2020 22:09:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86795 * 120.00185 * 2 1 4 4 H 1.48493 * 109.47639 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47140 * 299.99727 * 3 2 1 6 6 H 1.48502 * 109.47101 * 59.99322 * 3 2 1 7 7 C 1.37877 * 119.99967 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00015 * 180.02562 * 7 2 1 9 9 S 1.76200 * 120.00006 * 0.02562 * 7 2 1 10 10 O 1.42097 * 106.40317 * 66.45436 * 9 7 2 11 11 O 1.42097 * 106.39998 * 293.53168 * 9 7 2 12 12 N 1.65604 * 107.21806 * 179.97438 * 9 7 2 13 13 C 1.46925 * 120.63138 * 269.97613 * 12 9 7 14 14 C 1.53191 * 108.77423 * 233.62815 * 13 12 9 15 15 C 1.53037 * 109.31499 * 305.36620 * 14 13 12 16 16 C 1.53043 * 109.53919 * 61.36673 * 15 14 13 17 17 H 1.09000 * 109.49902 * 58.58363 * 16 15 14 18 18 F 1.39900 * 109.49715 * 178.68697 * 16 15 14 19 19 C 1.46926 * 120.62947 * 89.99924 * 12 9 7 20 20 H 0.97001 * 120.00126 * 0.02562 * 1 2 3 21 21 H 1.08998 * 109.58340 * 353.41770 * 13 12 9 22 22 H 1.09005 * 109.58474 * 113.84058 * 13 12 9 23 23 H 1.08997 * 109.49512 * 65.31959 * 14 13 12 24 24 H 1.08998 * 109.49723 * 185.41351 * 14 13 12 25 25 H 1.08997 * 109.46383 * 181.38282 * 15 14 13 26 26 H 1.09001 * 109.46057 * 301.34715 * 15 14 13 27 27 H 1.09006 * 109.58406 * 246.15760 * 19 12 9 28 28 H 1.09002 * 109.59019 * 6.57748 * 19 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 16 1.1235 -2.7200 0.0005 10 8 0.4518 -2.7955 -1.2494 11 8 0.4511 -2.7950 1.2501 12 7 2.2483 -3.9354 0.0005 13 6 2.7564 -4.4852 -1.2637 14 6 2.5725 -6.0060 -1.2492 15 6 3.2394 -6.5846 0.0008 16 6 2.5729 -6.0056 1.2510 17 1 1.5092 -6.2433 1.2394 18 9 3.1631 -6.5577 2.3929 19 6 2.7567 -4.4848 1.2648 20 1 -0.4850 0.8400 -0.0004 21 1 2.1999 -4.0578 -2.0978 22 1 3.8148 -4.2460 -1.3670 23 1 1.5089 -6.2437 -1.2373 24 1 3.0320 -6.4365 -2.1389 25 1 3.1313 -7.6692 0.0011 26 1 4.2981 -6.3253 0.0007 27 1 3.8152 -4.2456 1.3677 28 1 2.2007 -4.0571 2.0990 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701684011.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:54 Heat of formation + Delta-G solvation = -177.285385 kcal Electronic energy + Delta-G solvation = -15771.977413 eV Core-core repulsion = 12862.123330 eV Total energy + Delta-G solvation = -2909.854083 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 237.062 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -48.65350 -38.99257 -37.50953 -36.17614 -35.19920 -33.15793 -31.44725 -28.27199 -25.52564 -24.08588 -21.61444 -20.78432 -19.11728 -18.43030 -17.25750 -17.15220 -16.74360 -16.24928 -16.01384 -15.84636 -15.33353 -14.68395 -14.30756 -13.98798 -13.68372 -13.51131 -13.29566 -13.03818 -12.67641 -12.54047 -12.50901 -12.29492 -12.20378 -11.91477 -11.63813 -11.28662 -11.27652 -10.98026 -9.84898 -8.76546 -7.50755 0.23700 1.32435 1.33490 1.51331 2.19202 2.55686 2.72310 3.50578 3.56351 3.70025 3.79938 3.93229 4.08742 4.31854 4.36030 4.45127 4.55167 4.77919 4.83143 4.95611 4.99759 5.07577 5.21210 5.33083 5.37645 5.88362 5.89913 6.76433 8.18906 Molecular weight = 237.06amu Principal moments of inertia in cm(-1) A = 0.040077 B = 0.008520 C = 0.008255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.478790 B = 3285.724566 C = 3390.952837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.069 3.931 3 Si 0.992 3.008 4 H -0.247 1.247 5 H -0.258 1.258 6 H -0.260 1.260 7 C -1.041 5.041 8 H 0.119 0.881 9 S 2.717 3.283 10 O -1.034 7.034 11 O -1.040 7.040 12 N -1.005 6.005 13 C 0.105 3.895 14 C -0.125 4.125 15 C -0.132 4.132 16 C 0.077 3.923 17 H 0.080 0.920 18 F -0.216 7.216 19 C 0.094 3.906 20 H 0.299 0.701 21 H 0.079 0.921 22 H 0.090 0.910 23 H 0.059 0.941 24 H 0.115 0.885 25 H 0.095 0.905 26 H 0.090 0.910 27 H 0.094 0.906 28 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.185 -8.905 -1.517 12.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.144 4.144 3 Si 0.810 3.190 4 H -0.170 1.170 5 H -0.182 1.182 6 H -0.184 1.184 7 C -1.174 5.174 8 H 0.137 0.863 9 S 2.820 3.180 10 O -1.025 7.025 11 O -1.031 7.031 12 N -0.843 5.843 13 C -0.019 4.019 14 C -0.164 4.164 15 C -0.170 4.170 16 C 0.039 3.961 17 H 0.098 0.902 18 F -0.197 7.197 19 C -0.032 4.032 20 H 0.109 0.891 21 H 0.098 0.902 22 H 0.108 0.892 23 H 0.077 0.923 24 H 0.133 0.867 25 H 0.114 0.886 26 H 0.109 0.891 27 H 0.112 0.888 28 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 8.073 -9.003 -1.498 12.185 hybrid contribution 0.351 1.202 0.251 1.277 sum 8.424 -7.801 -1.247 11.549 Atomic orbital electron populations 1.69991 1.08781 1.32331 1.41512 1.26046 0.95398 1.05454 0.87517 0.85077 0.79484 0.75037 0.79412 1.17026 1.18214 1.18435 1.31007 1.07162 1.12649 1.66580 0.86297 1.00059 0.72691 0.73727 0.71514 1.93295 1.74245 1.88239 1.46682 1.93293 1.74458 1.88273 1.47030 1.57649 1.61864 1.53288 1.11505 1.21704 1.00812 0.95152 0.84281 1.21878 1.01569 0.93812 0.99187 1.22049 1.01235 1.01726 0.91966 1.21972 0.98219 0.92695 0.83219 0.90204 1.92778 1.86421 1.86783 1.53687 1.21901 1.01732 0.93489 0.86081 0.89073 0.90221 0.89218 0.92267 0.86709 0.88627 0.89124 0.88759 0.90226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -53.37 13.19 21.45 0.28 -53.09 15 2 C 0.07 3.81 5.46 84.65 0.46 4.27 15 3 Si 0.99 41.08 29.54 68.60 2.03 43.11 15 4 H -0.25 -9.53 7.11 99.48 0.71 -8.82 15 5 H -0.26 -10.06 7.11 99.48 0.71 -9.35 15 6 H -0.26 -10.22 7.11 99.48 0.71 -9.52 15 7 C -1.04 -57.08 9.75 67.73 0.66 -56.42 15 8 H 0.12 5.89 7.81 -2.91 -0.02 5.87 15 9 S 2.72 145.35 5.01 -56.49 -0.28 145.07 15 10 O -1.03 -60.58 16.60 -128.00 -2.13 -62.71 15 11 O -1.04 -61.98 16.61 -128.00 -2.13 -64.11 15 12 N -1.00 -39.30 3.29 -513.06 -1.69 -40.99 15 13 C 0.10 3.22 6.48 86.36 0.56 3.78 15 14 C -0.13 -2.88 6.08 30.67 0.19 -2.69 15 15 C -0.13 -2.80 5.62 30.62 0.17 -2.62 15 16 C 0.08 2.18 4.03 30.67 0.12 2.30 15 17 H 0.08 2.34 8.14 -2.39 -0.02 2.32 15 18 F -0.22 -6.23 17.09 44.97 0.77 -5.47 15 19 C 0.09 3.21 6.21 86.36 0.54 3.74 15 20 H 0.30 15.96 8.31 -92.71 -0.77 15.18 15 21 H 0.08 2.74 6.91 -2.39 -0.02 2.72 15 22 H 0.09 2.24 8.14 -2.38 -0.02 2.22 15 23 H 0.06 1.50 8.14 -2.39 -0.02 1.48 15 24 H 0.11 1.84 8.14 -2.39 -0.02 1.82 15 25 H 0.10 1.63 8.14 -2.39 -0.02 1.61 15 26 H 0.09 1.68 8.14 -2.39 -0.02 1.66 15 27 H 0.09 2.72 8.14 -2.38 -0.02 2.70 15 28 H 0.08 3.07 6.92 -2.39 -0.02 3.05 15 Total: -1.00 -73.60 253.22 0.71 -72.88 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: 1.16 Total: 12.95 kcal Atomic # 6 Polarization: -50.35 SS G_CDS: 2.70 Total: -47.65 kcal Atomic # 7 Polarization: -92.68 SS G_CDS: -1.40 Total: -94.08 kcal Atomic # 8 Polarization: -122.57 SS G_CDS: -4.25 Total: -126.82 kcal Atomic # 9 Polarization: -6.23 SS G_CDS: 0.77 Total: -5.47 kcal Atomic # 14 Polarization: 41.08 SS G_CDS: 2.03 Total: 43.11 kcal Atomic # 16 Polarization: 145.35 SS G_CDS: -0.28 Total: 145.07 kcal Total: -73.60 0.71 -72.88 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701684011.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.401 kcal (2) G-P(sol) polarization free energy of solvation -73.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds