Wall clock time and date at job start Sun Mar 29 2020 22:09:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00218 * 2 1 4 4 H 1.48500 * 109.47351 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47211 * 300.00619 * 3 2 1 6 6 H 1.48509 * 109.46987 * 59.99968 * 3 2 1 7 7 C 1.37880 * 119.99887 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99680 * 179.72407 * 7 2 1 9 9 S 1.76199 * 120.00013 * 359.97438 * 7 2 1 10 10 O 1.42099 * 106.40031 * 293.26670 * 9 7 2 11 11 O 1.42101 * 106.40156 * 66.18411 * 9 7 2 12 12 N 1.65598 * 107.21820 * 179.72553 * 9 7 2 13 13 C 1.46917 * 120.63105 * 269.72243 * 12 9 7 14 14 C 1.53628 * 108.54540 * 126.36928 * 13 12 9 15 15 C 1.53037 * 109.24128 * 54.85431 * 14 13 12 16 16 C 1.53038 * 109.53974 * 298.51290 * 15 14 13 17 17 H 1.09005 * 109.51959 * 301.40113 * 16 15 14 18 18 F 1.39904 * 109.49874 * 181.31769 * 16 15 14 19 19 C 1.46926 * 120.62885 * 89.99920 * 12 9 7 20 20 H 0.97000 * 119.99443 * 359.97438 * 1 2 3 21 21 H 1.09008 * 109.58390 * 246.20261 * 13 12 9 22 22 H 1.08997 * 109.58909 * 6.62403 * 13 12 9 23 23 H 1.08998 * 109.63039 * 294.86141 * 14 13 12 24 24 H 1.08997 * 109.42715 * 174.72210 * 14 13 12 25 25 H 1.08998 * 109.45878 * 178.49083 * 15 14 13 26 26 H 1.09000 * 109.44981 * 58.52606 * 15 14 13 27 27 H 1.09000 * 109.59062 * 353.37159 * 19 12 9 28 28 H 1.08996 * 109.58683 * 113.65792 * 19 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0050 9 16 1.1235 -2.7200 -0.0005 10 8 0.4570 -2.7985 1.2520 11 8 0.4457 -2.7920 -1.2474 12 7 2.2482 -3.9354 -0.0088 13 6 2.7464 -4.4857 -1.2767 14 6 4.2811 -4.4173 -1.2695 15 6 4.8119 -5.1301 -0.0237 16 6 4.2928 -4.4235 1.2306 17 1 4.6128 -3.3815 1.2204 18 9 4.8027 -5.0576 2.3686 19 6 2.7624 -4.4881 1.2517 20 1 -0.4849 0.8401 0.0004 21 1 2.4245 -5.5223 -1.3767 22 1 2.3569 -3.8982 -2.1081 23 1 4.6012 -3.3754 -1.2567 24 1 4.6700 -4.9069 -2.1623 25 1 5.9017 -5.1070 -0.0288 26 1 4.4707 -6.1653 -0.0248 27 1 2.3835 -3.9022 2.0891 28 1 2.4398 -5.5241 1.3549 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701684012.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:56 Heat of formation + Delta-G solvation = -152.374164 kcal Electronic energy + Delta-G solvation = -15866.180357 eV Core-core repulsion = 12957.406506 eV Total energy + Delta-G solvation = -2908.773851 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 237.062 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -47.40980 -37.66009 -35.35893 -34.02035 -33.14569 -31.81997 -30.14558 -26.17067 -24.18670 -22.83127 -20.40352 -18.60702 -17.61444 -16.38412 -15.85896 -15.44381 -15.14456 -14.90840 -14.71232 -14.04859 -13.54160 -13.13466 -13.06106 -12.34771 -12.26587 -12.06430 -11.38271 -11.26385 -11.06033 -10.95566 -10.81592 -10.61686 -10.45851 -10.34851 -10.13009 -9.95908 -9.29347 -8.95372 -8.31164 -6.73610 -5.36261 2.17085 3.02928 3.11429 3.17987 4.00966 4.38597 4.60133 4.72375 4.81438 4.92220 5.09890 5.29631 5.59736 5.68649 5.71136 5.86316 5.89136 6.00104 6.03708 6.13848 6.18376 6.40646 6.47068 6.72424 7.28625 7.47076 7.93110 8.85291 10.20133 Molecular weight = 237.06amu Principal moments of inertia in cm(-1) A = 0.028942 B = 0.010101 C = 0.009271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.211018 B = 2771.270298 C = 3019.527478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.133 3.867 3 Si 0.920 3.080 4 H -0.262 1.262 5 H -0.271 1.271 6 H -0.271 1.271 7 C -1.019 5.019 8 H 0.102 0.898 9 S 2.713 3.287 10 O -1.002 7.002 11 O -1.000 7.000 12 N -1.009 6.009 13 C 0.121 3.879 14 C -0.133 4.133 15 C -0.139 4.139 16 C 0.074 3.926 17 H 0.091 0.909 18 F -0.216 7.216 19 C 0.106 3.894 20 H 0.291 0.709 21 H 0.060 0.940 22 H 0.096 0.904 23 H 0.074 0.926 24 H 0.075 0.925 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.101 0.899 28 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.900 -6.522 -1.069 11.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C -0.085 4.085 3 Si 0.744 3.256 4 H -0.186 1.186 5 H -0.196 1.196 6 H -0.196 1.196 7 C -1.153 5.153 8 H 0.120 0.880 9 S 2.814 3.186 10 O -0.992 6.992 11 O -0.991 6.991 12 N -0.844 5.844 13 C -0.004 4.004 14 C -0.172 4.172 15 C -0.176 4.176 16 C 0.036 3.964 17 H 0.109 0.891 18 F -0.197 7.197 19 C -0.021 4.021 20 H 0.101 0.899 21 H 0.078 0.922 22 H 0.114 0.886 23 H 0.093 0.907 24 H 0.093 0.907 25 H 0.089 0.911 26 H 0.090 0.910 27 H 0.119 0.881 28 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 7.771 -6.621 -1.044 10.263 hybrid contribution 1.082 1.177 0.079 1.600 sum 8.853 -5.445 -0.964 10.438 Atomic orbital electron populations 1.69903 1.06795 1.30698 1.40090 1.24758 0.94461 1.00832 0.88474 0.86137 0.80428 0.80421 0.78615 1.18622 1.19579 1.19570 1.30621 1.06086 1.11726 1.66825 0.87952 1.00633 0.72154 0.72950 0.72856 1.93360 1.72862 1.87498 1.45487 1.93358 1.72357 1.87521 1.45853 1.58242 1.62075 1.54836 1.09225 1.21381 0.93113 0.99444 0.86511 1.21979 0.96483 1.01722 0.97020 1.22032 1.00899 1.00306 0.94411 1.22044 0.95130 0.97369 0.81898 0.89108 1.92775 1.88598 1.84645 1.53676 1.21665 0.91740 1.00735 0.87966 0.89882 0.92158 0.88607 0.90691 0.90661 0.91138 0.90983 0.88064 0.91307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.58 13.19 55.43 0.73 -23.85 15 2 C 0.13 3.64 5.46 -17.82 -0.10 3.55 15 3 Si 0.92 20.26 29.54 -169.99 -5.02 15.23 15 4 H -0.26 -5.55 7.11 56.52 0.40 -5.15 15 5 H -0.27 -5.75 7.11 56.52 0.40 -5.35 15 6 H -0.27 -5.77 7.11 56.52 0.40 -5.37 15 7 C -1.02 -27.35 9.75 30.60 0.30 -27.05 15 8 H 0.10 2.50 7.81 -52.49 -0.41 2.09 15 9 S 2.71 70.67 4.97 -107.50 -0.53 70.13 15 10 O -1.00 -28.82 16.73 -57.17 -0.96 -29.77 15 11 O -1.00 -28.50 16.72 -57.17 -0.96 -29.46 15 12 N -1.01 -19.90 3.28 -113.28 -0.37 -20.27 15 13 C 0.12 1.97 6.41 -3.49 -0.02 1.94 15 14 C -0.13 -1.73 6.10 -26.39 -0.16 -1.89 15 15 C -0.14 -1.74 5.62 -26.69 -0.15 -1.89 15 16 C 0.07 1.11 4.03 -26.61 -0.11 1.00 15 17 H 0.09 1.37 8.14 -51.93 -0.42 0.95 15 18 F -0.22 -3.35 17.09 2.25 0.04 -3.31 15 19 C 0.11 1.85 6.11 -3.71 -0.02 1.82 15 20 H 0.29 7.57 8.31 -40.82 -0.34 7.24 15 21 H 0.06 0.85 8.14 -51.92 -0.42 0.43 15 22 H 0.10 1.65 7.12 -51.93 -0.37 1.28 15 23 H 0.07 1.03 8.14 -51.93 -0.42 0.60 15 24 H 0.07 0.78 8.14 -51.93 -0.42 0.36 15 25 H 0.07 0.78 8.14 -51.93 -0.42 0.35 15 26 H 0.07 0.84 8.14 -51.93 -0.42 0.42 15 27 H 0.10 1.89 7.13 -51.93 -0.37 1.52 15 28 H 0.07 1.06 8.14 -51.93 -0.42 0.64 15 LS Contribution 253.68 15.07 3.82 3.82 Total: -1.00 -33.21 253.68 -6.75 -39.97 By element: Atomic # 1 Polarization: 3.27 SS G_CDS: -3.24 Total: 0.02 kcal Atomic # 6 Polarization: -22.25 SS G_CDS: -0.26 Total: -22.52 kcal Atomic # 7 Polarization: -44.48 SS G_CDS: 0.36 Total: -44.12 kcal Atomic # 8 Polarization: -57.32 SS G_CDS: -1.91 Total: -59.23 kcal Atomic # 9 Polarization: -3.35 SS G_CDS: 0.04 Total: -3.31 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.23 kcal Atomic # 16 Polarization: 70.67 SS G_CDS: -0.53 Total: 70.13 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -33.21 -6.75 -39.97 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701684012.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.406 kcal (2) G-P(sol) polarization free energy of solvation -33.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds