Wall clock time and date at job start Sun Mar 29 2020 22:09:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00218 * 2 1 4 4 H 1.48500 * 109.47351 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47211 * 300.00619 * 3 2 1 6 6 H 1.48509 * 109.46987 * 59.99968 * 3 2 1 7 7 C 1.37880 * 119.99887 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99680 * 179.72407 * 7 2 1 9 9 S 1.76199 * 120.00013 * 359.97438 * 7 2 1 10 10 O 1.42099 * 106.40031 * 293.26670 * 9 7 2 11 11 O 1.42101 * 106.40156 * 66.18411 * 9 7 2 12 12 N 1.65598 * 107.21820 * 179.72553 * 9 7 2 13 13 C 1.46917 * 120.63105 * 269.72243 * 12 9 7 14 14 C 1.53628 * 108.54540 * 126.36928 * 13 12 9 15 15 C 1.53037 * 109.24128 * 54.85431 * 14 13 12 16 16 C 1.53038 * 109.53974 * 298.51290 * 15 14 13 17 17 H 1.09005 * 109.51959 * 301.40113 * 16 15 14 18 18 F 1.39904 * 109.49874 * 181.31769 * 16 15 14 19 19 C 1.46926 * 120.62885 * 89.99920 * 12 9 7 20 20 H 0.97000 * 119.99443 * 359.97438 * 1 2 3 21 21 H 1.09008 * 109.58390 * 246.20261 * 13 12 9 22 22 H 1.08997 * 109.58909 * 6.62403 * 13 12 9 23 23 H 1.08998 * 109.63039 * 294.86141 * 14 13 12 24 24 H 1.08997 * 109.42715 * 174.72210 * 14 13 12 25 25 H 1.08998 * 109.45878 * 178.49083 * 15 14 13 26 26 H 1.09000 * 109.44981 * 58.52606 * 15 14 13 27 27 H 1.09000 * 109.59062 * 353.37159 * 19 12 9 28 28 H 1.08996 * 109.58683 * 113.65792 * 19 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0050 9 16 1.1235 -2.7200 -0.0005 10 8 0.4570 -2.7985 1.2520 11 8 0.4457 -2.7920 -1.2474 12 7 2.2482 -3.9354 -0.0088 13 6 2.7464 -4.4857 -1.2767 14 6 4.2811 -4.4173 -1.2695 15 6 4.8119 -5.1301 -0.0237 16 6 4.2928 -4.4235 1.2306 17 1 4.6128 -3.3815 1.2204 18 9 4.8027 -5.0576 2.3686 19 6 2.7624 -4.4881 1.2517 20 1 -0.4849 0.8401 0.0004 21 1 2.4245 -5.5223 -1.3767 22 1 2.3569 -3.8982 -2.1081 23 1 4.6012 -3.3754 -1.2567 24 1 4.6700 -4.9069 -2.1623 25 1 5.9017 -5.1070 -0.0288 26 1 4.4707 -6.1653 -0.0248 27 1 2.3835 -3.9022 2.0891 28 1 2.4398 -5.5241 1.3549 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701684012.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:55 Heat of formation + Delta-G solvation = -177.451922 kcal Electronic energy + Delta-G solvation = -15867.267810 eV Core-core repulsion = 12957.406506 eV Total energy + Delta-G solvation = -2909.861304 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 237.062 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -48.62251 -38.96691 -37.50548 -36.17632 -35.20438 -33.11511 -31.42255 -28.27394 -25.50944 -24.06452 -21.75264 -20.46897 -19.33674 -18.35993 -17.18474 -17.08915 -16.78786 -16.33089 -16.00539 -15.81395 -15.30955 -14.58870 -14.30072 -13.98821 -13.64788 -13.49565 -13.33355 -13.03895 -12.64149 -12.54359 -12.50722 -12.29326 -12.15737 -11.93302 -11.67463 -11.28056 -11.27246 -10.91968 -9.85104 -8.76004 -7.49787 0.23958 1.32473 1.33689 1.51081 2.18967 2.56583 2.72884 3.52732 3.58145 3.74178 3.78985 3.96862 4.10095 4.32449 4.36120 4.45219 4.58316 4.77752 4.81439 4.98222 5.02209 5.09757 5.22394 5.33863 5.42084 5.88866 5.90088 6.77192 8.19666 Molecular weight = 237.06amu Principal moments of inertia in cm(-1) A = 0.028942 B = 0.010101 C = 0.009271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.211018 B = 2771.270298 C = 3019.527478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.070 3.930 3 Si 0.990 3.010 4 H -0.245 1.245 5 H -0.259 1.259 6 H -0.261 1.261 7 C -1.036 5.036 8 H 0.121 0.879 9 S 2.716 3.284 10 O -1.041 7.041 11 O -1.036 7.036 12 N -1.005 6.005 13 C 0.108 3.892 14 C -0.126 4.126 15 C -0.132 4.132 16 C 0.076 3.924 17 H 0.088 0.912 18 F -0.217 7.217 19 C 0.098 3.902 20 H 0.299 0.701 21 H 0.085 0.915 22 H 0.078 0.922 23 H 0.066 0.934 24 H 0.112 0.888 25 H 0.095 0.905 26 H 0.086 0.914 27 H 0.078 0.922 28 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.439 -6.771 -1.574 13.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.143 4.143 3 Si 0.808 3.192 4 H -0.168 1.168 5 H -0.183 1.183 6 H -0.186 1.186 7 C -1.169 5.169 8 H 0.139 0.861 9 S 2.818 3.182 10 O -1.032 7.032 11 O -1.026 7.026 12 N -0.843 5.843 13 C -0.016 4.016 14 C -0.165 4.165 15 C -0.170 4.170 16 C 0.038 3.962 17 H 0.106 0.894 18 F -0.198 7.198 19 C -0.029 4.029 20 H 0.109 0.891 21 H 0.103 0.897 22 H 0.097 0.903 23 H 0.085 0.915 24 H 0.130 0.870 25 H 0.113 0.887 26 H 0.105 0.895 27 H 0.097 0.903 28 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 10.307 -6.894 -1.551 12.497 hybrid contribution 0.288 1.139 0.247 1.201 sum 10.596 -5.755 -1.304 12.128 Atomic orbital electron populations 1.69998 1.08827 1.32294 1.41591 1.26026 0.95343 1.05394 0.87540 0.85109 0.79615 0.75159 0.79347 1.16827 1.18298 1.18565 1.30968 1.07128 1.12391 1.66451 0.86138 1.00129 0.72783 0.73764 0.71485 1.93298 1.74726 1.88297 1.46849 1.93300 1.74083 1.88285 1.46924 1.57679 1.61417 1.53658 1.11524 1.21756 0.95681 1.00143 0.84050 1.21967 0.93567 1.01960 0.98985 1.22032 1.02284 1.00474 0.92161 1.22017 0.93110 0.97887 0.83178 0.89442 1.92775 1.88355 1.84647 1.54070 1.21862 0.93804 1.01147 0.86046 0.89111 0.89669 0.90310 0.91512 0.86998 0.88687 0.89517 0.90337 0.89248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -53.27 13.19 21.45 0.28 -52.98 15 2 C 0.07 3.83 5.46 84.66 0.46 4.30 15 3 Si 0.99 40.71 29.54 68.60 2.03 42.73 15 4 H -0.25 -9.31 7.11 99.48 0.71 -8.61 15 5 H -0.26 -10.05 7.11 99.48 0.71 -9.35 15 6 H -0.26 -10.26 7.11 99.48 0.71 -9.55 15 7 C -1.04 -55.95 9.75 67.73 0.66 -55.29 15 8 H 0.12 5.82 7.81 -2.91 -0.02 5.80 15 9 S 2.72 145.00 4.97 -56.49 -0.28 144.72 15 10 O -1.04 -62.20 16.73 -128.00 -2.14 -64.34 15 11 O -1.04 -60.87 16.72 -128.00 -2.14 -63.01 15 12 N -1.00 -39.23 3.28 -512.29 -1.68 -40.91 15 13 C 0.11 3.32 6.41 86.51 0.55 3.88 15 14 C -0.13 -2.84 6.10 30.82 0.19 -2.66 15 15 C -0.13 -2.78 5.62 30.62 0.17 -2.61 15 16 C 0.08 2.12 4.03 30.67 0.12 2.24 15 17 H 0.09 2.49 8.14 -2.38 -0.02 2.47 15 18 F -0.22 -6.26 17.09 44.97 0.77 -5.49 15 19 C 0.10 3.32 6.11 86.36 0.53 3.85 15 20 H 0.30 15.91 8.31 -92.71 -0.77 15.14 15 21 H 0.09 2.19 8.14 -2.38 -0.02 2.17 15 22 H 0.08 2.69 7.12 -2.39 -0.02 2.67 15 23 H 0.07 1.64 8.14 -2.39 -0.02 1.62 15 24 H 0.11 1.78 8.14 -2.39 -0.02 1.76 15 25 H 0.09 1.62 8.14 -2.39 -0.02 1.60 15 26 H 0.09 1.63 8.14 -2.39 -0.02 1.61 15 27 H 0.08 3.00 7.13 -2.39 -0.02 2.98 15 28 H 0.09 2.64 8.14 -2.39 -0.02 2.62 15 Total: -1.00 -73.32 253.68 0.68 -72.64 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: 1.16 Total: 12.93 kcal Atomic # 6 Polarization: -48.98 SS G_CDS: 2.69 Total: -46.29 kcal Atomic # 7 Polarization: -92.49 SS G_CDS: -1.40 Total: -93.89 kcal Atomic # 8 Polarization: -123.07 SS G_CDS: -4.28 Total: -127.36 kcal Atomic # 9 Polarization: -6.26 SS G_CDS: 0.77 Total: -5.49 kcal Atomic # 14 Polarization: 40.71 SS G_CDS: 2.03 Total: 42.73 kcal Atomic # 16 Polarization: 145.00 SS G_CDS: -0.28 Total: 144.72 kcal Total: -73.32 0.68 -72.64 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701684012.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.809 kcal (2) G-P(sol) polarization free energy of solvation -73.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds