Wall clock time and date at job start Sun Mar 29 2020 22:10:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 119.99377 * 2 1 4 4 H 1.48497 * 109.47294 * 239.99512 * 3 2 1 5 5 H 1.48497 * 109.47527 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47076 * 120.00032 * 3 2 1 7 7 C 1.37873 * 120.00069 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99666 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00357 * 359.97438 * 7 2 1 10 10 N 1.46493 * 109.47432 * 179.97438 * 9 7 2 11 11 C 1.34773 * 120.00409 * 180.02562 * 10 9 7 12 12 O 1.21763 * 119.99956 * 0.02562 * 11 10 9 13 13 C 1.41655 * 120.00471 * 180.27818 * 11 10 9 14 14 C 1.35248 * 120.00423 * 172.90541 * 13 11 10 15 15 C 1.46690 * 119.99673 * 349.11853 * 14 13 11 16 16 C 1.44534 * 123.50010 * 317.14887 * 15 14 13 17 17 C 1.32746 * 113.08997 * 179.83921 * 16 15 14 18 18 S 1.75496 * 110.63634 * 0.41947 * 17 16 15 19 19 C 1.36300 * 123.49936 * 137.45598 * 15 14 13 20 20 H 0.97002 * 120.00572 * 359.97438 * 1 2 3 21 21 H 1.09009 * 109.46972 * 59.99803 * 9 7 2 22 22 H 1.08997 * 109.47107 * 300.00581 * 9 7 2 23 23 H 0.97001 * 119.99987 * 0.02562 * 10 9 7 24 24 H 1.08007 * 119.99479 * 352.90405 * 13 11 10 25 25 H 1.08000 * 119.99916 * 169.11727 * 14 13 11 26 26 H 1.07996 * 123.45226 * 0.04467 * 16 15 14 27 27 H 1.07993 * 124.67831 * 180.17497 * 17 16 15 28 28 H 1.07996 * 124.60432 * 359.92802 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6966 -1.2124 5 1 1.2840 2.7465 0.0006 6 1 3.1027 1.6966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0017 10 7 2.2032 -3.6126 0.0015 11 6 1.7540 -4.8833 0.0019 12 8 0.5569 -5.1059 0.0019 13 6 2.6745 -5.9599 0.0076 14 6 2.2300 -7.2290 0.1526 15 6 0.8376 -7.4785 0.5408 16 6 0.1492 -6.7295 1.5675 17 6 -1.1049 -7.1254 1.7483 18 16 -1.4967 -8.4517 0.6679 19 6 0.0604 -8.4447 -0.0251 20 1 -0.4851 0.8400 0.0004 21 1 0.6241 -2.5575 -0.8881 22 1 0.6248 -2.5563 0.8919 23 1 3.1568 -3.4353 0.0010 24 1 3.7314 -5.7673 -0.1039 25 1 2.9003 -8.0587 -0.0173 26 1 0.6071 -5.9278 2.1277 27 1 -1.7883 -6.6937 2.4644 28 1 0.3868 -9.1145 -0.8069 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000726263299.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:37 Heat of formation + Delta-G solvation = 17.699331 kcal Electronic energy + Delta-G solvation = -13922.406602 eV Core-core repulsion = 11451.776916 eV Total energy + Delta-G solvation = -2470.629686 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 237.056 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.40152 -36.98270 -34.11590 -32.66902 -32.20516 -29.17356 -27.38646 -24.35659 -22.80719 -21.48338 -19.77113 -18.45991 -17.44830 -16.61327 -16.00486 -15.19568 -14.73838 -14.19512 -13.93064 -13.58865 -12.80972 -12.76773 -12.44817 -12.02685 -11.95425 -11.83620 -11.74347 -10.98078 -10.88306 -10.50684 -10.30097 -9.53063 -9.39694 -9.09508 -8.75153 -8.50504 -7.75235 -7.49009 -6.16033 -4.23018 1.02151 1.73675 2.02660 2.37836 3.24517 3.25193 3.30037 3.31531 4.05169 4.24024 4.48406 5.02106 5.15007 5.19888 5.39758 5.61854 5.74150 5.87048 6.15706 6.38040 6.48917 6.63699 6.81687 7.34190 7.47615 7.53485 7.69287 7.98317 8.66233 8.79887 9.14923 9.43863 10.94082 Molecular weight = 237.06amu Principal moments of inertia in cm(-1) A = 0.045956 B = 0.005185 C = 0.004783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.132675 B = 5399.125628 C = 5853.237717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.064 3.936 3 Si 0.903 3.097 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.544 4.544 8 H 0.062 0.938 9 C 0.250 3.750 10 N -0.707 5.707 11 C 0.517 3.483 12 O -0.540 6.540 13 C -0.201 4.201 14 C -0.019 4.019 15 C -0.067 4.067 16 C -0.046 4.046 17 C -0.244 4.244 18 S 0.116 5.884 19 C -0.243 4.243 20 H 0.266 0.734 21 H 0.026 0.974 22 H 0.026 0.974 23 H 0.390 0.610 24 H 0.128 0.872 25 H 0.131 0.869 26 H 0.137 0.863 27 H 0.158 0.842 28 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.259 -15.360 1.869 15.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.583 4.583 8 H 0.080 0.920 9 C 0.129 3.871 10 N -0.355 5.355 11 C 0.306 3.694 12 O -0.422 6.422 13 C -0.223 4.223 14 C -0.041 4.041 15 C -0.082 4.082 16 C -0.075 4.075 17 C -0.378 4.378 18 S 0.380 5.620 19 C -0.379 4.379 20 H 0.076 0.924 21 H 0.044 0.956 22 H 0.044 0.956 23 H 0.222 0.778 24 H 0.146 0.854 25 H 0.149 0.851 26 H 0.154 0.846 27 H 0.175 0.825 28 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 0.906 -16.187 1.643 16.295 hybrid contribution 2.310 2.106 0.015 3.126 sum 3.216 -14.081 1.657 14.538 Atomic orbital electron populations 1.69967 1.06097 1.27381 1.48857 1.24950 0.94910 0.99431 0.94713 0.86482 0.79424 0.82358 0.78684 1.20075 1.21069 1.20071 1.21206 0.93219 0.90570 1.53271 0.92002 1.19063 0.88334 0.82027 0.97644 1.46497 1.10988 1.06449 1.71548 1.17228 0.89079 0.83947 0.79172 1.90838 1.16494 1.84293 1.50576 1.22324 1.00178 0.93843 1.05924 1.21919 0.92914 0.96211 0.93072 1.19251 0.94880 0.95827 0.98242 1.21028 0.93676 0.96702 0.96052 1.25109 1.00661 1.04605 1.07419 1.82623 1.11994 1.33728 1.33674 1.25211 0.99637 1.05534 1.07499 0.92413 0.95579 0.95563 0.77773 0.85444 0.85100 0.84563 0.82473 0.82440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.26 13.29 55.43 0.74 -25.52 15 2 C 0.06 1.78 5.46 -17.82 -0.10 1.68 15 3 Si 0.90 20.95 29.54 -169.99 -5.02 15.93 15 4 H -0.28 -6.25 7.11 56.52 0.40 -5.85 15 5 H -0.29 -6.58 7.11 56.52 0.40 -6.18 15 6 H -0.28 -6.24 7.11 56.52 0.40 -5.84 15 7 C -0.54 -14.87 9.28 -34.44 -0.32 -15.19 15 8 H 0.06 1.58 7.60 -52.49 -0.40 1.18 15 9 C 0.25 6.67 5.43 -5.20 -0.03 6.64 15 10 N -0.71 -15.00 5.54 -64.40 -0.36 -15.36 15 11 C 0.52 10.35 6.88 -14.96 -0.10 10.24 15 12 O -0.54 -12.58 11.89 5.13 0.06 -12.52 15 13 C -0.20 -2.97 9.79 -39.34 -0.39 -3.36 15 14 C -0.02 -0.25 9.99 -37.24 -0.37 -0.63 15 15 C -0.07 -1.05 4.53 -104.70 -0.47 -1.52 15 16 C -0.05 -0.78 7.17 -38.98 -0.28 -1.06 15 17 C -0.24 -3.80 11.11 28.85 0.32 -3.48 15 18 S 0.12 1.57 23.02 -107.50 -2.47 -0.91 15 19 C -0.24 -3.42 10.82 30.03 0.33 -3.09 15 20 H 0.27 7.42 8.31 -40.82 -0.34 7.08 15 21 H 0.03 0.78 8.14 -51.92 -0.42 0.35 15 22 H 0.03 0.77 8.14 -51.93 -0.42 0.35 15 23 H 0.39 7.10 8.28 -40.82 -0.34 6.76 15 24 H 0.13 1.45 8.06 -52.48 -0.42 1.03 15 25 H 0.13 1.25 8.06 -52.49 -0.42 0.83 15 26 H 0.14 2.44 7.39 -52.49 -0.39 2.05 15 27 H 0.16 2.17 8.06 -52.49 -0.42 1.75 15 28 H 0.16 1.80 8.06 -52.49 -0.42 1.38 15 LS Contribution 265.14 15.07 4.00 4.00 Total: -1.00 -31.99 265.14 -7.27 -39.26 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: -2.80 Total: 4.89 kcal Atomic # 6 Polarization: -8.35 SS G_CDS: -1.41 Total: -9.76 kcal Atomic # 7 Polarization: -41.26 SS G_CDS: 0.38 Total: -40.88 kcal Atomic # 8 Polarization: -12.58 SS G_CDS: 0.06 Total: -12.52 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Atomic # 16 Polarization: 1.57 SS G_CDS: -2.47 Total: -0.91 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -31.99 -7.27 -39.26 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000726263299.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.956 kcal (2) G-P(sol) polarization free energy of solvation -31.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.257 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds