Wall clock time and date at job start Sun Mar 29 2020 22:10:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 119.99377 * 2 1 4 4 H 1.48497 * 109.47294 * 239.99512 * 3 2 1 5 5 H 1.48497 * 109.47527 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47076 * 120.00032 * 3 2 1 7 7 C 1.37873 * 120.00069 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99666 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00357 * 359.97438 * 7 2 1 10 10 N 1.46493 * 109.47432 * 179.97438 * 9 7 2 11 11 C 1.34773 * 120.00409 * 180.02562 * 10 9 7 12 12 O 1.21763 * 119.99956 * 0.02562 * 11 10 9 13 13 C 1.41655 * 120.00471 * 180.27818 * 11 10 9 14 14 C 1.35248 * 120.00423 * 172.90541 * 13 11 10 15 15 C 1.46690 * 119.99673 * 349.11853 * 14 13 11 16 16 C 1.44534 * 123.50010 * 317.14887 * 15 14 13 17 17 C 1.32746 * 113.08997 * 179.83921 * 16 15 14 18 18 S 1.75496 * 110.63634 * 0.41947 * 17 16 15 19 19 C 1.36300 * 123.49936 * 137.45598 * 15 14 13 20 20 H 0.97002 * 120.00572 * 359.97438 * 1 2 3 21 21 H 1.09009 * 109.46972 * 59.99803 * 9 7 2 22 22 H 1.08997 * 109.47107 * 300.00581 * 9 7 2 23 23 H 0.97001 * 119.99987 * 0.02562 * 10 9 7 24 24 H 1.08007 * 119.99479 * 352.90405 * 13 11 10 25 25 H 1.08000 * 119.99916 * 169.11727 * 14 13 11 26 26 H 1.07996 * 123.45226 * 0.04467 * 16 15 14 27 27 H 1.07993 * 124.67831 * 180.17497 * 17 16 15 28 28 H 1.07996 * 124.60432 * 359.92802 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6966 -1.2124 5 1 1.2840 2.7465 0.0006 6 1 3.1027 1.6966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0017 10 7 2.2032 -3.6126 0.0015 11 6 1.7540 -4.8833 0.0019 12 8 0.5569 -5.1059 0.0019 13 6 2.6745 -5.9599 0.0076 14 6 2.2300 -7.2290 0.1526 15 6 0.8376 -7.4785 0.5408 16 6 0.1492 -6.7295 1.5675 17 6 -1.1049 -7.1254 1.7483 18 16 -1.4967 -8.4517 0.6679 19 6 0.0604 -8.4447 -0.0251 20 1 -0.4851 0.8400 0.0004 21 1 0.6241 -2.5575 -0.8881 22 1 0.6248 -2.5563 0.8919 23 1 3.1568 -3.4353 0.0010 24 1 3.7314 -5.7673 -0.1039 25 1 2.9003 -8.0587 -0.0173 26 1 0.6071 -5.9278 2.1277 27 1 -1.7883 -6.6937 2.4644 28 1 0.3868 -9.1145 -0.8069 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000726263299.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:37 Heat of formation + Delta-G solvation = -4.337374 kcal Electronic energy + Delta-G solvation = -13923.362185 eV Core-core repulsion = 11451.776916 eV Total energy + Delta-G solvation = -2471.585269 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 237.056 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.91132 -38.28840 -36.02455 -34.34378 -33.76203 -30.44803 -29.29532 -25.90699 -24.35860 -23.04120 -21.28303 -19.86351 -18.83300 -18.05493 -17.68792 -16.94415 -16.37707 -15.87653 -15.46472 -14.88988 -14.34074 -14.01473 -13.99284 -13.83492 -13.56299 -13.15049 -13.01928 -12.88537 -12.69091 -12.23439 -11.67650 -11.51190 -10.79412 -10.76315 -10.60306 -9.91845 -9.46152 -8.66509 -8.29786 -6.46651 -0.12916 0.51333 0.88831 1.21653 1.41522 1.45795 1.53977 2.01208 2.34098 2.58875 2.83462 3.04856 3.94889 4.07806 4.25436 4.42862 4.62370 4.69986 4.95283 5.08379 5.25193 5.29242 5.30974 5.45033 5.50833 5.64492 5.80063 5.86119 6.64995 7.00829 7.23303 7.58685 8.82115 Molecular weight = 237.06amu Principal moments of inertia in cm(-1) A = 0.045956 B = 0.005185 C = 0.004783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.132675 B = 5399.125628 C = 5853.237717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.003 3.997 3 Si 0.985 3.015 4 H -0.262 1.262 5 H -0.285 1.285 6 H -0.262 1.262 7 C -0.558 4.558 8 H 0.083 0.917 9 C 0.271 3.729 10 N -0.708 5.708 11 C 0.514 3.486 12 O -0.581 6.581 13 C -0.222 4.222 14 C 0.012 3.988 15 C -0.101 4.101 16 C -0.070 4.070 17 C -0.267 4.267 18 S 0.160 5.840 19 C -0.238 4.238 20 H 0.268 0.732 21 H -0.017 1.017 22 H -0.015 1.015 23 H 0.406 0.594 24 H 0.168 0.832 25 H 0.183 0.817 26 H 0.112 0.888 27 H 0.163 0.837 28 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.381 -16.550 1.238 17.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.196 4.196 3 Si 0.807 3.193 4 H -0.186 1.186 5 H -0.211 1.211 6 H -0.186 1.186 7 C -0.596 4.596 8 H 0.101 0.899 9 C 0.147 3.853 10 N -0.357 5.357 11 C 0.305 3.695 12 O -0.465 6.465 13 C -0.244 4.244 14 C -0.010 4.010 15 C -0.116 4.116 16 C -0.099 4.099 17 C -0.401 4.401 18 S 0.424 5.576 19 C -0.374 4.374 20 H 0.077 0.923 21 H 0.001 0.999 22 H 0.003 0.997 23 H 0.242 0.758 24 H 0.186 0.814 25 H 0.200 0.800 26 H 0.130 0.870 27 H 0.181 0.819 28 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 3.069 -17.414 1.015 17.712 hybrid contribution 1.494 2.307 0.235 2.759 sum 4.563 -15.107 1.249 15.830 Atomic orbital electron populations 1.70137 1.08284 1.28586 1.49978 1.26079 0.95781 1.03938 0.93843 0.85213 0.77930 0.76591 0.79526 1.18627 1.21056 1.18624 1.21617 0.94278 0.90770 1.52926 0.89943 1.18435 0.88661 0.84450 0.93719 1.46231 1.10918 1.05867 1.72713 1.18112 0.89527 0.84435 0.77391 1.90822 1.18722 1.84859 1.52127 1.22269 1.00940 0.92230 1.08953 1.22460 0.92249 0.97091 0.89208 1.19532 0.96662 0.96629 0.98814 1.21059 0.94612 0.96932 0.97288 1.25417 1.00585 1.05773 1.08304 1.82439 1.11511 1.31597 1.32007 1.25683 0.99504 1.04936 1.07310 0.92281 0.99892 0.99691 0.75844 0.81443 0.79976 0.87002 0.81942 0.79215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.08 13.29 21.45 0.28 -56.80 15 2 C 0.00 0.17 5.46 84.65 0.46 0.64 15 3 Si 0.98 42.84 29.54 68.60 2.03 44.87 15 4 H -0.26 -10.77 7.11 99.48 0.71 -10.06 15 5 H -0.29 -12.30 7.11 99.48 0.71 -11.59 15 6 H -0.26 -10.76 7.11 99.48 0.71 -10.06 15 7 C -0.56 -30.97 9.28 25.60 0.24 -30.74 15 8 H 0.08 4.13 7.60 -2.91 -0.02 4.11 15 9 C 0.27 15.20 5.43 85.63 0.46 15.66 15 10 N -0.71 -30.74 5.54 -475.86 -2.64 -33.38 15 11 C 0.51 20.87 6.88 85.09 0.59 21.46 15 12 O -0.58 -28.23 11.89 -4.55 -0.05 -28.28 15 13 C -0.22 -6.14 9.79 22.42 0.22 -5.92 15 14 C 0.01 0.28 9.99 23.79 0.24 0.51 15 15 C -0.10 -3.04 4.53 -19.92 -0.09 -3.13 15 16 C -0.07 -2.44 7.17 22.70 0.16 -2.28 15 17 C -0.27 -8.49 11.11 66.64 0.74 -7.74 15 18 S 0.16 4.09 23.02 -56.49 -1.30 2.79 15 19 C -0.24 -6.09 10.82 67.37 0.73 -5.36 15 20 H 0.27 15.38 8.31 -92.71 -0.77 14.61 15 21 H -0.02 -1.07 8.14 -2.38 -0.02 -1.09 15 22 H -0.01 -0.94 8.14 -2.39 -0.02 -0.96 15 23 H 0.41 14.61 8.28 -92.71 -0.77 13.85 15 24 H 0.17 3.20 8.06 -2.91 -0.02 3.18 15 25 H 0.18 2.45 8.06 -2.91 -0.02 2.42 15 26 H 0.11 4.33 7.39 -2.91 -0.02 4.31 15 27 H 0.16 4.73 8.06 -2.91 -0.02 4.70 15 28 H 0.19 3.51 8.06 -2.91 -0.02 3.49 15 Total: -1.00 -73.27 265.14 2.48 -70.80 By element: Atomic # 1 Polarization: 16.50 SS G_CDS: 0.41 Total: 16.90 kcal Atomic # 6 Polarization: -20.65 SS G_CDS: 3.75 Total: -16.90 kcal Atomic # 7 Polarization: -87.83 SS G_CDS: -2.35 Total: -90.18 kcal Atomic # 8 Polarization: -28.23 SS G_CDS: -0.05 Total: -28.28 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.87 kcal Atomic # 16 Polarization: 4.09 SS G_CDS: -1.30 Total: 2.79 kcal Total: -73.27 2.48 -70.80 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000726263299.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.460 kcal (2) G-P(sol) polarization free energy of solvation -73.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds