Wall clock time and date at job start Sun Mar 29 2020 22:10:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86804 * 119.99561 * 2 1 4 4 H 1.48497 * 109.46873 * 270.00041 * 3 2 1 5 5 H 1.48497 * 109.47122 * 30.00257 * 3 2 1 6 6 H 1.48503 * 109.47023 * 150.00230 * 3 2 1 7 7 C 1.37874 * 120.00240 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99950 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00135 * 180.02562 * 7 2 1 10 10 N 1.46498 * 109.47425 * 180.02562 * 9 7 2 11 11 C 1.34774 * 120.00210 * 179.97438 * 10 9 7 12 12 O 1.21761 * 120.00074 * 359.97438 * 11 10 9 13 13 C 1.41649 * 120.00079 * 179.97438 * 11 10 9 14 14 C 1.35255 * 120.00228 * 180.02562 * 13 11 10 15 15 C 1.46687 * 120.00407 * 179.72222 * 14 13 11 16 16 C 1.44524 * 123.50395 * 179.72733 * 15 14 13 17 17 C 1.32736 * 113.09385 * 179.76791 * 16 15 14 18 18 S 1.75492 * 110.63639 * 0.48285 * 17 16 15 19 19 C 1.36301 * 123.49886 * 0.02562 * 15 14 13 20 20 H 0.96993 * 120.00252 * 359.97438 * 1 2 3 21 21 H 1.08998 * 109.47083 * 59.99436 * 9 7 2 22 22 H 1.09006 * 109.46874 * 300.00177 * 9 7 2 23 23 H 0.97004 * 119.99753 * 359.97438 * 10 9 7 24 24 H 1.08000 * 120.00420 * 359.72372 * 13 11 10 25 25 H 1.08000 * 119.99293 * 359.72015 * 14 13 11 26 26 H 1.08004 * 123.45239 * 0.02562 * 16 15 14 27 27 H 1.08000 * 124.68484 * 180.21317 * 17 16 15 28 28 H 1.08002 * 124.60184 * 359.97438 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4647 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 7 4.0000 -2.5751 -0.0013 11 6 5.3251 -2.8214 -0.0016 12 8 6.1163 -1.8959 -0.0012 13 6 5.7973 -4.1568 -0.0024 14 6 7.1271 -4.4040 -0.0021 15 6 7.6162 -5.7869 0.0033 16 6 9.0183 -6.1372 -0.0019 17 6 9.2275 -7.4480 0.0095 18 16 7.7031 -8.3175 0.0132 19 6 6.7954 -6.8751 0.0077 20 1 -0.4850 0.8400 0.0004 21 1 3.8746 -0.6806 0.8905 22 1 3.8753 -0.6795 -0.8895 23 1 3.3697 -3.3125 -0.0020 24 1 5.0956 -4.9778 0.0018 25 1 7.8288 -3.5830 -0.0059 26 1 9.8143 -5.4073 -0.0096 27 1 10.2013 -7.9149 0.0114 28 1 5.7163 -6.8294 0.0081 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000726263300.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:39 Heat of formation + Delta-G solvation = 6.149378 kcal Electronic energy + Delta-G solvation = -13313.695975 eV Core-core repulsion = 10842.565445 eV Total energy + Delta-G solvation = -2471.130530 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 237.056 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.24277 -37.85806 -34.34249 -32.98224 -32.31146 -29.32698 -27.96606 -25.31842 -22.74697 -21.18070 -19.71731 -18.66008 -18.31975 -16.98900 -15.98979 -15.73564 -14.80889 -14.47929 -14.20092 -13.57361 -13.38358 -13.20947 -12.72294 -12.56229 -12.28258 -12.19157 -11.79395 -11.03207 -10.97794 -10.77288 -10.16901 -9.96216 -9.49016 -9.32191 -9.12325 -8.76779 -8.24149 -7.92954 -6.20503 -4.22658 0.49810 1.40832 1.41608 1.79368 2.77661 3.27836 3.34469 3.43238 3.94895 4.12151 4.34683 4.59534 4.91965 5.03987 5.14858 5.17360 5.42129 5.57426 5.71362 5.80894 6.14290 6.38198 6.53233 6.86066 7.09089 7.25253 7.40663 8.15397 8.53322 8.76115 8.95265 9.39753 10.91436 Molecular weight = 237.06amu Principal moments of inertia in cm(-1) A = 0.063509 B = 0.004000 C = 0.003771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 440.779222 B = 6998.340063 C = 7423.966734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.077 3.923 3 Si 0.877 3.123 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.260 1.260 7 C -0.544 4.544 8 H 0.079 0.921 9 C 0.219 3.781 10 N -0.699 5.699 11 C 0.531 3.469 12 O -0.567 6.567 13 C -0.197 4.197 14 C -0.012 4.012 15 C -0.091 4.091 16 C -0.112 4.112 17 C -0.234 4.234 18 S 0.159 5.841 19 C -0.233 4.233 20 H 0.267 0.733 21 H 0.026 0.974 22 H 0.022 0.978 23 H 0.397 0.603 24 H 0.122 0.878 25 H 0.138 0.862 26 H 0.149 0.851 27 H 0.165 0.835 28 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.876 -16.406 0.038 22.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.127 4.127 3 Si 0.704 3.296 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.185 1.185 7 C -0.581 4.581 8 H 0.097 0.903 9 C 0.096 3.904 10 N -0.347 5.347 11 C 0.320 3.680 12 O -0.450 6.450 13 C -0.219 4.219 14 C -0.034 4.034 15 C -0.105 4.105 16 C -0.141 4.141 17 C -0.369 4.369 18 S 0.425 5.575 19 C -0.370 4.370 20 H 0.077 0.923 21 H 0.044 0.956 22 H 0.039 0.961 23 H 0.231 0.769 24 H 0.140 0.860 25 H 0.155 0.845 26 H 0.167 0.833 27 H 0.182 0.818 28 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 15.844 -17.165 0.048 23.360 hybrid contribution 0.208 2.059 -0.030 2.070 sum 16.052 -15.106 0.018 22.042 Atomic orbital electron populations 1.69882 1.06205 1.27418 1.49502 1.24807 0.94808 0.99209 0.93871 0.86804 0.80585 0.83184 0.79055 1.19845 1.20893 1.18480 1.21100 0.88549 0.95234 1.53262 0.90261 1.19503 0.95227 0.78799 0.96846 1.46158 1.05796 1.11114 1.71596 1.17090 0.83334 0.89270 0.78323 1.90774 1.55474 1.46721 1.51983 1.22119 0.96589 0.97153 1.06087 1.21919 0.95824 0.93425 0.92272 1.19461 0.92138 0.93413 1.05490 1.21368 0.95527 0.95765 1.01451 1.25456 1.02086 0.97666 1.11645 1.82990 0.95860 1.07938 1.70719 1.25657 1.04863 0.97087 1.09351 0.92275 0.95594 0.96052 0.76932 0.86020 0.84457 0.83333 0.81751 0.81303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.71 13.96 55.43 0.77 -25.94 15 2 C 0.08 2.19 5.47 -17.82 -0.10 2.10 15 3 Si 0.88 21.68 27.47 -169.99 -4.67 17.02 15 4 H -0.27 -6.64 7.11 56.52 0.40 -6.24 15 5 H -0.28 -6.84 7.11 56.52 0.40 -6.44 15 6 H -0.26 -6.41 6.54 56.52 0.37 -6.04 15 7 C -0.54 -15.13 9.83 -34.44 -0.34 -15.47 15 8 H 0.08 2.28 7.84 -52.49 -0.41 1.87 15 9 C 0.22 5.51 4.50 -5.20 -0.02 5.48 15 10 N -0.70 -14.66 5.54 -64.40 -0.36 -15.02 15 11 C 0.53 10.58 7.56 -14.96 -0.11 10.46 15 12 O -0.57 -13.29 16.11 5.13 0.08 -13.21 15 13 C -0.20 -2.95 9.25 -39.34 -0.36 -3.32 15 14 C -0.01 -0.16 9.57 -37.23 -0.36 -0.52 15 15 C -0.09 -1.05 5.97 -104.71 -0.62 -1.67 15 16 C -0.11 -1.07 10.38 -38.99 -0.40 -1.48 15 17 C -0.23 -1.91 11.11 28.85 0.32 -1.58 15 18 S 0.16 1.30 23.02 -107.50 -2.47 -1.17 15 19 C -0.23 -2.37 10.26 30.03 0.31 -2.06 15 20 H 0.27 7.48 8.31 -40.82 -0.34 7.14 15 21 H 0.03 0.69 7.20 -51.93 -0.37 0.31 15 22 H 0.02 0.56 7.57 -51.93 -0.39 0.17 15 23 H 0.40 7.27 8.28 -40.82 -0.34 6.93 15 24 H 0.12 1.47 6.52 -52.49 -0.34 1.13 15 25 H 0.14 1.94 7.45 -52.49 -0.39 1.55 15 26 H 0.15 1.17 8.06 -52.48 -0.42 0.75 15 27 H 0.16 0.92 8.06 -52.49 -0.42 0.50 15 28 H 0.17 1.51 6.81 -52.49 -0.36 1.16 15 LS Contribution 266.84 15.07 4.02 4.02 Total: -1.00 -32.63 266.84 -6.94 -39.57 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: -2.62 Total: 2.80 kcal Atomic # 6 Polarization: -6.36 SS G_CDS: -1.69 Total: -8.06 kcal Atomic # 7 Polarization: -41.37 SS G_CDS: 0.42 Total: -40.96 kcal Atomic # 8 Polarization: -13.29 SS G_CDS: 0.08 Total: -13.21 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.67 Total: 17.02 kcal Atomic # 16 Polarization: 1.30 SS G_CDS: -2.47 Total: -1.17 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -32.63 -6.94 -39.57 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000726263300.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.716 kcal (2) G-P(sol) polarization free energy of solvation -32.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.567 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds