Wall clock time and date at job start Sun Mar 29 2020 22:10:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86804 * 119.99561 * 2 1 4 4 H 1.48497 * 109.46873 * 270.00041 * 3 2 1 5 5 H 1.48497 * 109.47122 * 30.00257 * 3 2 1 6 6 H 1.48503 * 109.47023 * 150.00230 * 3 2 1 7 7 C 1.37874 * 120.00240 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99950 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00135 * 180.02562 * 7 2 1 10 10 N 1.46498 * 109.47425 * 180.02562 * 9 7 2 11 11 C 1.34774 * 120.00210 * 179.97438 * 10 9 7 12 12 O 1.21761 * 120.00074 * 359.97438 * 11 10 9 13 13 C 1.41649 * 120.00079 * 179.97438 * 11 10 9 14 14 C 1.35255 * 120.00228 * 180.02562 * 13 11 10 15 15 C 1.46687 * 120.00407 * 179.72222 * 14 13 11 16 16 C 1.44524 * 123.50395 * 179.72733 * 15 14 13 17 17 C 1.32736 * 113.09385 * 179.76791 * 16 15 14 18 18 S 1.75492 * 110.63639 * 0.48285 * 17 16 15 19 19 C 1.36301 * 123.49886 * 0.02562 * 15 14 13 20 20 H 0.96993 * 120.00252 * 359.97438 * 1 2 3 21 21 H 1.08998 * 109.47083 * 59.99436 * 9 7 2 22 22 H 1.09006 * 109.46874 * 300.00177 * 9 7 2 23 23 H 0.97004 * 119.99753 * 359.97438 * 10 9 7 24 24 H 1.08000 * 120.00420 * 359.72372 * 13 11 10 25 25 H 1.08000 * 119.99293 * 359.72015 * 14 13 11 26 26 H 1.08004 * 123.45239 * 0.02562 * 16 15 14 27 27 H 1.08000 * 124.68484 * 180.21317 * 17 16 15 28 28 H 1.08002 * 124.60184 * 359.97438 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4647 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 7 4.0000 -2.5751 -0.0013 11 6 5.3251 -2.8214 -0.0016 12 8 6.1163 -1.8959 -0.0012 13 6 5.7973 -4.1568 -0.0024 14 6 7.1271 -4.4040 -0.0021 15 6 7.6162 -5.7869 0.0033 16 6 9.0183 -6.1372 -0.0019 17 6 9.2275 -7.4480 0.0095 18 16 7.7031 -8.3175 0.0132 19 6 6.7954 -6.8751 0.0077 20 1 -0.4850 0.8400 0.0004 21 1 3.8746 -0.6806 0.8905 22 1 3.8753 -0.6795 -0.8895 23 1 3.3697 -3.3125 -0.0020 24 1 5.0956 -4.9778 0.0018 25 1 7.8288 -3.5830 -0.0059 26 1 9.8143 -5.4073 -0.0096 27 1 10.2013 -7.9149 0.0114 28 1 5.7163 -6.8294 0.0081 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000726263300.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:38 Heat of formation + Delta-G solvation = -16.319317 kcal Electronic energy + Delta-G solvation = -13314.670290 eV Core-core repulsion = 10842.565445 eV Total energy + Delta-G solvation = -2472.104845 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 237.056 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.78537 -38.72825 -36.21179 -34.44269 -34.02772 -30.56391 -29.52135 -26.48327 -24.28735 -22.64558 -21.08348 -19.65606 -19.42714 -18.62302 -17.45238 -17.19659 -16.19242 -16.13191 -15.90805 -14.93516 -14.43597 -14.34035 -14.27828 -14.03637 -13.48611 -13.42735 -13.04419 -12.75697 -12.71730 -11.93980 -11.73229 -11.67075 -11.18941 -10.99234 -10.92891 -9.97957 -9.81206 -8.87073 -8.41089 -6.48297 -0.45232 0.54276 0.73256 1.08082 1.32354 1.34131 1.47406 1.80534 2.27524 2.55173 2.59338 2.94236 3.80035 3.93979 4.11125 4.40789 4.44857 4.65509 4.76532 4.80806 5.01110 5.06959 5.21905 5.32619 5.43727 5.49610 5.55538 6.08714 6.52122 6.83716 7.14183 7.38960 8.73584 Molecular weight = 237.06amu Principal moments of inertia in cm(-1) A = 0.063509 B = 0.004000 C = 0.003771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 440.779222 B = 6998.340063 C = 7423.966734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.025 3.975 3 Si 0.939 3.061 4 H -0.264 1.264 5 H -0.271 1.271 6 H -0.262 1.262 7 C -0.548 4.548 8 H 0.059 0.941 9 C 0.230 3.770 10 N -0.702 5.702 11 C 0.534 3.466 12 O -0.610 6.610 13 C -0.226 4.226 14 C 0.021 3.979 15 C -0.123 4.123 16 C -0.127 4.127 17 C -0.231 4.231 18 S 0.204 5.796 19 C -0.235 4.235 20 H 0.273 0.727 21 H 0.013 0.987 22 H 0.012 0.988 23 H 0.409 0.591 24 H 0.151 0.849 25 H 0.127 0.873 26 H 0.160 0.840 27 H 0.193 0.807 28 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.569 -18.005 0.007 25.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.175 4.175 3 Si 0.762 3.238 4 H -0.189 1.189 5 H -0.196 1.196 6 H -0.186 1.186 7 C -0.586 4.586 8 H 0.077 0.923 9 C 0.107 3.893 10 N -0.350 5.350 11 C 0.326 3.674 12 O -0.495 6.495 13 C -0.248 4.248 14 C -0.002 4.002 15 C -0.137 4.137 16 C -0.156 4.156 17 C -0.366 4.366 18 S 0.471 5.529 19 C -0.372 4.372 20 H 0.082 0.918 21 H 0.031 0.969 22 H 0.030 0.970 23 H 0.245 0.755 24 H 0.168 0.832 25 H 0.145 0.855 26 H 0.178 0.822 27 H 0.210 0.790 28 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 17.537 -18.811 0.015 25.718 hybrid contribution -0.226 2.321 -0.019 2.332 sum 17.311 -16.490 -0.003 23.908 Atomic orbital electron populations 1.69981 1.07644 1.28654 1.50618 1.25623 0.95601 1.02745 0.93538 0.85834 0.79204 0.79221 0.79496 1.18927 1.19602 1.18591 1.21288 0.89889 0.94652 1.52752 0.92266 1.19109 0.93429 0.81122 0.95686 1.45990 1.06785 1.09806 1.72459 1.17728 0.82280 0.90795 0.76602 1.90741 1.56212 1.48493 1.54091 1.21875 0.97647 0.95070 1.10209 1.22027 0.95094 0.94683 0.88371 1.19469 0.93475 0.92383 1.08389 1.21511 0.94951 0.96841 1.02247 1.25843 1.03453 0.97250 1.10043 1.82928 0.95123 1.06105 1.68757 1.26001 1.05807 0.97997 1.07444 0.91801 0.96923 0.97026 0.75511 0.83161 0.85502 0.82234 0.79023 0.80371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.21 13.96 21.45 0.30 -55.91 15 2 C 0.03 1.45 5.47 84.65 0.46 1.92 15 3 Si 0.94 44.89 27.47 68.60 1.88 46.77 15 4 H -0.26 -12.21 7.11 99.48 0.71 -11.50 15 5 H -0.27 -12.34 7.11 99.48 0.71 -11.63 15 6 H -0.26 -12.47 6.54 99.48 0.65 -11.82 15 7 C -0.55 -31.02 9.83 25.60 0.25 -30.76 15 8 H 0.06 3.50 7.84 -2.91 -0.02 3.48 15 9 C 0.23 11.76 4.50 85.63 0.38 12.15 15 10 N -0.70 -29.74 5.54 -475.86 -2.64 -32.38 15 11 C 0.53 21.41 7.56 85.08 0.64 22.05 15 12 O -0.61 -29.08 16.11 -4.54 -0.07 -29.16 15 13 C -0.23 -6.61 9.25 22.42 0.21 -6.40 15 14 C 0.02 0.55 9.57 23.79 0.23 0.78 15 15 C -0.12 -2.58 5.97 -19.92 -0.12 -2.70 15 16 C -0.13 -2.14 10.38 22.70 0.24 -1.90 15 17 C -0.23 -2.98 11.11 66.65 0.74 -2.24 15 18 S 0.20 2.66 23.02 -56.49 -1.30 1.35 15 19 C -0.24 -4.18 10.26 67.37 0.69 -3.49 15 20 H 0.27 15.32 8.31 -92.71 -0.77 14.55 15 21 H 0.01 0.69 7.20 -2.39 -0.02 0.67 15 22 H 0.01 0.62 7.57 -2.38 -0.02 0.61 15 23 H 0.41 15.09 8.28 -92.71 -0.77 14.32 15 24 H 0.15 3.41 6.52 -2.91 -0.02 3.39 15 25 H 0.13 3.58 7.45 -2.91 -0.02 3.56 15 26 H 0.16 2.20 8.06 -2.91 -0.02 2.18 15 27 H 0.19 1.35 8.06 -2.91 -0.02 1.32 15 28 H 0.18 2.72 6.81 -2.91 -0.02 2.70 15 Total: -1.00 -70.37 266.84 2.26 -68.11 By element: Atomic # 1 Polarization: 11.46 SS G_CDS: 0.36 Total: 11.82 kcal Atomic # 6 Polarization: -14.33 SS G_CDS: 3.73 Total: -10.61 kcal Atomic # 7 Polarization: -85.96 SS G_CDS: -2.34 Total: -88.29 kcal Atomic # 8 Polarization: -29.08 SS G_CDS: -0.07 Total: -29.16 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 1.88 Total: 46.77 kcal Atomic # 16 Polarization: 2.66 SS G_CDS: -1.30 Total: 1.35 kcal Total: -70.37 2.26 -68.11 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000726263300.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.791 kcal (2) G-P(sol) polarization free energy of solvation -70.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds