Wall clock time and date at job start Sun Mar 29 2020 22:18:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 119.99840 * 2 1 4 4 H 1.48499 * 109.47277 * 269.99663 * 3 2 1 5 5 H 1.48508 * 109.47313 * 29.99984 * 3 2 1 6 6 H 1.48506 * 109.47198 * 149.99730 * 3 2 1 7 7 C 1.37873 * 119.99771 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99711 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00373 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47354 * 180.02562 * 9 7 2 11 11 O 1.45196 * 109.47357 * 180.02562 * 10 9 7 12 12 C 1.34711 * 117.00276 * 179.97438 * 11 10 9 13 13 O 1.21468 * 119.99602 * 359.97438 * 12 11 10 14 14 C 1.47739 * 120.00239 * 179.97438 * 12 11 10 15 15 C 1.39619 * 120.53337 * 0.04560 * 14 12 11 16 16 N 1.31645 * 120.67530 * 179.97438 * 15 14 12 17 17 C 1.31914 * 121.95110 * 359.97438 * 16 15 14 18 18 C 1.38809 * 121.01282 * 359.97438 * 17 16 15 19 19 O 1.35923 * 120.40391 * 180.02562 * 18 17 16 20 20 C 1.38875 * 119.19737 * 0.02562 * 18 17 16 21 21 H 0.97002 * 120.00075 * 0.02562 * 1 2 3 22 22 H 1.08998 * 109.47335 * 60.00019 * 9 7 2 23 23 H 1.09002 * 109.47553 * 300.00182 * 9 7 2 24 24 H 1.09001 * 109.47553 * 59.99730 * 10 9 7 25 25 H 1.09013 * 109.47127 * 300.00096 * 10 9 7 26 26 H 1.07996 * 119.65867 * 359.97438 * 15 14 12 27 27 H 1.07997 * 119.49080 * 180.02562 * 17 16 15 28 28 H 0.96696 * 114.00611 * 89.98992 * 19 18 17 29 29 H 1.07997 * 120.88206 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6620 0.0018 11 8 1.5193 -4.9195 0.0012 12 6 2.2529 -6.0493 0.0017 13 8 3.4660 -5.9857 0.0021 14 6 1.5822 -7.3657 0.0017 15 6 0.1887 -7.4517 0.0002 16 7 -0.4118 -8.6232 -0.0003 17 6 0.2658 -9.7550 0.0000 18 6 1.6538 -9.7576 0.0004 19 8 2.3396 -10.9311 0.0002 20 6 2.3335 -8.5465 0.0009 21 1 -0.4850 0.8401 -0.0004 22 1 0.6247 -2.5571 -0.8897 23 1 0.6240 -2.5567 0.8903 24 1 2.8713 -3.6039 0.8922 25 1 2.8727 -3.6047 -0.8878 26 1 -0.4025 -6.5480 -0.0005 27 1 -0.2677 -10.6941 -0.0008 28 1 2.5382 -11.2706 -0.8832 29 1 3.4131 -8.5167 0.0016 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731915849.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:18:57 Heat of formation + Delta-G solvation = -102.021376 kcal Electronic energy + Delta-G solvation = -15576.994771 eV Core-core repulsion = 12658.420734 eV Total energy + Delta-G solvation = -2918.574037 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 237.083 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.92015 -39.63755 -37.55114 -36.24876 -33.41058 -32.68659 -30.82262 -30.09899 -25.82635 -24.42484 -23.70366 -21.47749 -20.78354 -18.91715 -17.66606 -17.30417 -16.61988 -16.33607 -16.07206 -15.79248 -15.23306 -14.53287 -13.85935 -13.58444 -13.18991 -13.11306 -12.90327 -12.39679 -11.75920 -11.32331 -11.12933 -10.84815 -10.80895 -10.55646 -10.17773 -9.80528 -9.73081 -9.61945 -9.33765 -9.26862 -8.47389 -6.13387 -4.18045 0.27980 0.77919 2.55431 2.86639 3.26875 3.33172 3.37003 3.45019 3.73640 4.14718 4.36505 4.46790 4.58628 4.82048 4.94606 5.23341 5.28424 5.64991 5.77142 5.99310 6.01897 6.12691 6.56297 6.79654 7.10432 7.49744 7.54563 7.57310 7.81332 8.02668 8.19619 8.87289 9.46595 10.98012 Molecular weight = 237.08amu Principal moments of inertia in cm(-1) A = 0.062981 B = 0.004153 C = 0.003908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 444.468609 B = 6741.208948 C = 7162.663015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.061 3.939 3 Si 0.900 3.100 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.528 4.528 8 H 0.059 0.941 9 C 0.024 3.976 10 C 0.076 3.924 11 O -0.349 6.349 12 C 0.505 3.495 13 O -0.509 6.509 14 C -0.152 4.152 15 C 0.152 3.848 16 N -0.472 5.472 17 C 0.105 3.895 18 C 0.042 3.958 19 O -0.488 6.488 20 C -0.043 4.043 21 H 0.264 0.736 22 H 0.029 0.971 23 H 0.030 0.970 24 H 0.061 0.939 25 H 0.061 0.939 26 H 0.181 0.819 27 H 0.167 0.833 28 H 0.394 0.606 29 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.455 -18.826 -1.685 18.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.142 4.142 3 Si 0.728 3.272 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.566 4.566 8 H 0.078 0.922 9 C -0.013 4.013 10 C 0.004 3.996 11 O -0.265 6.265 12 C 0.349 3.651 13 O -0.399 6.399 14 C -0.156 4.156 15 C -0.006 4.006 16 N -0.182 5.182 17 C -0.052 4.052 18 C -0.005 4.005 19 O -0.297 6.297 20 C -0.069 4.069 21 H 0.073 0.927 22 H 0.048 0.952 23 H 0.048 0.952 24 H 0.080 0.920 25 H 0.080 0.920 26 H 0.198 0.802 27 H 0.184 0.816 28 H 0.250 0.750 29 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 0.726 -18.616 -1.071 18.661 hybrid contribution 1.613 0.912 -0.495 1.918 sum 2.339 -17.704 -1.566 17.926 Atomic orbital electron populations 1.69969 1.06081 1.27056 1.49619 1.24982 0.94934 0.99415 0.94822 0.86461 0.79755 0.82777 0.78250 1.20471 1.21023 1.19727 1.20959 0.93187 0.90046 1.52386 0.92228 1.19187 0.94177 0.88884 0.99025 1.23751 0.96505 0.78152 1.01227 1.86563 1.41925 1.15580 1.82434 1.20775 0.85593 0.85285 0.73474 1.90813 1.14919 1.88269 1.45927 1.20302 0.95238 0.91769 1.08258 1.23438 0.91001 0.96606 0.89519 1.67863 1.39884 0.97972 1.12466 1.23465 0.90656 0.97677 0.93427 1.19316 0.91215 0.85871 1.04071 1.84877 1.75725 1.35229 1.33846 1.22101 1.02134 0.90250 0.92439 0.92660 0.95217 0.95207 0.92013 0.92034 0.80183 0.81637 0.75011 0.82809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.03 13.29 55.43 0.74 -25.29 15 2 C 0.06 1.71 5.46 -17.82 -0.10 1.61 15 3 Si 0.90 21.20 29.54 -169.99 -5.02 16.18 15 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 15 5 H -0.28 -6.62 7.11 56.52 0.40 -6.22 15 6 H -0.27 -6.30 7.11 56.52 0.40 -5.90 15 7 C -0.53 -14.61 9.11 -34.44 -0.31 -14.93 15 8 H 0.06 1.60 7.74 -52.48 -0.41 1.19 15 9 C 0.02 0.62 5.35 -27.89 -0.15 0.47 15 10 C 0.08 1.64 5.41 37.16 0.20 1.84 15 11 O -0.35 -6.71 9.50 -40.52 -0.38 -7.09 15 12 C 0.51 8.77 7.91 34.61 0.27 9.04 15 13 O -0.51 -9.89 16.21 -19.24 -0.31 -10.21 15 14 C -0.15 -2.10 5.89 -104.85 -0.62 -2.72 15 15 C 0.15 1.95 10.78 -17.12 -0.18 1.77 15 16 N -0.47 -5.72 10.34 -12.78 -0.13 -5.85 15 17 C 0.11 1.02 11.13 -17.31 -0.19 0.83 15 18 C 0.04 0.41 6.73 -39.13 -0.26 0.15 15 19 O -0.49 -3.79 13.52 -19.50 -0.26 -4.06 15 20 C -0.04 -0.51 9.67 -38.70 -0.37 -0.88 15 21 H 0.26 7.25 8.31 -40.82 -0.34 6.91 15 22 H 0.03 0.79 8.14 -51.93 -0.42 0.37 15 23 H 0.03 0.79 8.14 -51.93 -0.42 0.37 15 24 H 0.06 1.32 8.14 -51.93 -0.42 0.90 15 25 H 0.06 1.31 8.14 -51.92 -0.42 0.89 15 26 H 0.18 2.22 7.62 -52.49 -0.40 1.82 15 27 H 0.17 1.11 8.06 -52.49 -0.42 0.69 15 28 H 0.39 1.07 9.06 45.56 0.41 1.48 15 29 H 0.15 1.74 7.73 -52.49 -0.41 1.33 15 LS Contribution 272.23 15.07 4.10 4.10 Total: -1.00 -32.21 272.23 -5.04 -37.25 By element: Atomic # 1 Polarization: -0.17 SS G_CDS: -2.05 Total: -2.22 kcal Atomic # 6 Polarization: -1.10 SS G_CDS: -1.72 Total: -2.82 kcal Atomic # 7 Polarization: -31.75 SS G_CDS: 0.60 Total: -31.14 kcal Atomic # 8 Polarization: -20.39 SS G_CDS: -0.96 Total: -21.35 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -32.21 -5.04 -37.25 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731915849.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.771 kcal (2) G-P(sol) polarization free energy of solvation -32.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds