Wall clock time and date at job start Sun Mar 29 2020 22:18:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 119.99840 * 2 1 4 4 H 1.48499 * 109.47277 * 269.99663 * 3 2 1 5 5 H 1.48508 * 109.47313 * 29.99984 * 3 2 1 6 6 H 1.48506 * 109.47198 * 149.99730 * 3 2 1 7 7 C 1.37873 * 119.99771 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99711 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00373 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47354 * 180.02562 * 9 7 2 11 11 O 1.45196 * 109.47357 * 180.02562 * 10 9 7 12 12 C 1.34711 * 117.00276 * 179.97438 * 11 10 9 13 13 O 1.21468 * 119.99602 * 359.97438 * 12 11 10 14 14 C 1.47739 * 120.00239 * 179.97438 * 12 11 10 15 15 C 1.39619 * 120.53337 * 0.04560 * 14 12 11 16 16 N 1.31645 * 120.67530 * 179.97438 * 15 14 12 17 17 C 1.31914 * 121.95110 * 359.97438 * 16 15 14 18 18 C 1.38809 * 121.01282 * 359.97438 * 17 16 15 19 19 O 1.35923 * 120.40391 * 180.02562 * 18 17 16 20 20 C 1.38875 * 119.19737 * 0.02562 * 18 17 16 21 21 H 0.97002 * 120.00075 * 0.02562 * 1 2 3 22 22 H 1.08998 * 109.47335 * 60.00019 * 9 7 2 23 23 H 1.09002 * 109.47553 * 300.00182 * 9 7 2 24 24 H 1.09001 * 109.47553 * 59.99730 * 10 9 7 25 25 H 1.09013 * 109.47127 * 300.00096 * 10 9 7 26 26 H 1.07996 * 119.65867 * 359.97438 * 15 14 12 27 27 H 1.07997 * 119.49080 * 180.02562 * 17 16 15 28 28 H 0.96696 * 114.00611 * 89.98992 * 19 18 17 29 29 H 1.07997 * 120.88206 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6620 0.0018 11 8 1.5193 -4.9195 0.0012 12 6 2.2529 -6.0493 0.0017 13 8 3.4660 -5.9857 0.0021 14 6 1.5822 -7.3657 0.0017 15 6 0.1887 -7.4517 0.0002 16 7 -0.4118 -8.6232 -0.0003 17 6 0.2658 -9.7550 0.0000 18 6 1.6538 -9.7576 0.0004 19 8 2.3396 -10.9311 0.0002 20 6 2.3335 -8.5465 0.0009 21 1 -0.4850 0.8401 -0.0004 22 1 0.6247 -2.5571 -0.8897 23 1 0.6240 -2.5567 0.8903 24 1 2.8713 -3.6039 0.8922 25 1 2.8727 -3.6047 -0.8878 26 1 -0.4025 -6.5480 -0.0005 27 1 -0.2677 -10.6941 -0.0008 28 1 2.5382 -11.2706 -0.8832 29 1 3.4131 -8.5167 0.0016 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731915849.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:18:57 Heat of formation + Delta-G solvation = -124.885619 kcal Electronic energy + Delta-G solvation = -15577.986239 eV Core-core repulsion = 12658.420734 eV Total energy + Delta-G solvation = -2919.565505 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 237.083 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.99536 -40.90185 -38.28963 -37.79401 -35.46297 -33.72454 -32.37705 -31.37959 -27.45467 -25.89409 -24.60413 -23.13518 -22.29238 -19.95077 -18.88464 -18.32566 -18.18802 -17.63969 -17.45401 -17.24071 -16.51946 -16.05541 -15.22452 -14.64364 -14.44821 -14.38564 -14.35949 -13.92220 -13.18807 -13.08534 -12.64759 -12.61653 -12.46708 -12.11637 -11.63863 -11.53295 -11.43887 -11.13368 -10.61927 -10.61087 -10.12102 -8.27077 -6.40126 -0.70533 -0.09222 1.31559 1.40202 1.43230 1.49982 1.56941 2.39540 2.51340 2.95026 3.07561 3.22323 3.58120 3.63394 3.71181 4.09560 4.19679 4.20835 4.37576 4.67155 4.79281 4.84105 5.18659 5.29840 5.45254 5.46587 5.72541 6.05883 6.50010 6.60968 6.73381 6.74419 7.29581 8.85363 Molecular weight = 237.08amu Principal moments of inertia in cm(-1) A = 0.062981 B = 0.004153 C = 0.003908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 444.468609 B = 6741.208948 C = 7162.663015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.006 3.994 3 Si 0.973 3.027 4 H -0.270 1.270 5 H -0.279 1.279 6 H -0.264 1.264 7 C -0.550 4.550 8 H 0.065 0.935 9 C 0.031 3.969 10 C 0.091 3.909 11 O -0.355 6.355 12 C 0.508 3.492 13 O -0.534 6.534 14 C -0.169 4.169 15 C 0.149 3.851 16 N -0.486 5.486 17 C 0.117 3.883 18 C 0.062 3.938 19 O -0.489 6.489 20 C -0.046 4.046 21 H 0.268 0.732 22 H 0.009 0.991 23 H 0.008 0.992 24 H 0.063 0.937 25 H 0.064 0.936 26 H 0.176 0.824 27 H 0.203 0.797 28 H 0.419 0.581 29 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.078 -20.259 -1.815 20.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.193 4.193 3 Si 0.797 3.203 4 H -0.195 1.195 5 H -0.205 1.205 6 H -0.188 1.188 7 C -0.588 4.588 8 H 0.084 0.916 9 C -0.007 4.007 10 C 0.018 3.982 11 O -0.271 6.271 12 C 0.353 3.647 13 O -0.425 6.425 14 C -0.172 4.172 15 C -0.008 4.008 16 N -0.195 5.195 17 C -0.041 4.041 18 C 0.015 3.985 19 O -0.301 6.301 20 C -0.072 4.072 21 H 0.077 0.923 22 H 0.028 0.972 23 H 0.027 0.973 24 H 0.081 0.919 25 H 0.082 0.918 26 H 0.193 0.807 27 H 0.219 0.781 28 H 0.280 0.720 29 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 1.357 -20.082 -1.220 20.165 hybrid contribution 1.395 1.131 -0.464 1.855 sum 2.752 -18.952 -1.685 19.224 Atomic orbital electron populations 1.70091 1.07766 1.28271 1.50343 1.25955 0.95852 1.03390 0.94128 0.85326 0.78518 0.77817 0.78652 1.19549 1.20452 1.18781 1.21368 0.93733 0.91193 1.52502 0.91640 1.18991 0.94344 0.90393 0.96941 1.23270 0.95170 0.78400 1.01368 1.86543 1.41980 1.15561 1.82990 1.21351 0.85424 0.85636 0.72255 1.90790 1.15900 1.88507 1.47329 1.20074 0.95609 0.90279 1.11281 1.23361 0.90540 0.97168 0.89780 1.67923 1.40221 0.98255 1.13134 1.24045 0.90891 0.98113 0.91034 1.19201 0.91209 0.85808 1.02305 1.84831 1.75311 1.33891 1.36114 1.22212 1.02291 0.90358 0.92371 0.92341 0.97234 0.97318 0.91898 0.91765 0.80656 0.78067 0.72005 0.82638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.06 13.29 21.45 0.28 -54.78 15 2 C 0.01 0.33 5.46 84.65 0.46 0.79 15 3 Si 0.97 43.37 29.54 68.60 2.03 45.40 15 4 H -0.27 -11.61 7.11 99.48 0.71 -10.90 15 5 H -0.28 -12.11 7.11 99.48 0.71 -11.41 15 6 H -0.26 -11.28 7.11 99.48 0.71 -10.58 15 7 C -0.55 -30.90 9.11 25.60 0.23 -30.67 15 8 H 0.07 3.51 7.74 -2.91 -0.02 3.49 15 9 C 0.03 1.61 5.35 29.85 0.16 1.77 15 10 C 0.09 4.02 5.41 71.98 0.39 4.41 15 11 O -0.35 -14.01 9.50 -56.21 -0.53 -14.55 15 12 C 0.51 17.87 7.91 70.33 0.56 18.43 15 13 O -0.53 -20.93 16.21 19.94 0.32 -20.61 15 14 C -0.17 -4.61 5.89 -20.02 -0.12 -4.73 15 15 C 0.15 3.77 10.78 85.05 0.92 4.69 15 16 N -0.49 -10.91 10.34 -194.36 -2.01 -12.92 15 17 C 0.12 1.90 11.13 84.82 0.94 2.84 15 18 C 0.06 1.03 6.73 22.56 0.15 1.18 15 19 O -0.49 -5.74 13.52 -92.68 -1.25 -7.00 15 20 C -0.05 -1.02 9.67 22.84 0.22 -0.80 15 21 H 0.27 14.87 8.31 -92.71 -0.77 14.10 15 22 H 0.01 0.52 8.14 -2.39 -0.02 0.50 15 23 H 0.01 0.47 8.14 -2.39 -0.02 0.46 15 24 H 0.06 2.75 8.14 -2.39 -0.02 2.73 15 25 H 0.06 2.78 8.14 -2.38 -0.02 2.77 15 26 H 0.18 4.47 7.62 -2.91 -0.02 4.45 15 27 H 0.20 1.79 8.06 -2.91 -0.02 1.76 15 28 H 0.42 0.55 9.06 -74.06 -0.67 -0.12 15 29 H 0.16 3.33 7.73 -2.91 -0.02 3.31 15 Total: -1.00 -69.26 272.23 3.27 -66.00 By element: Atomic # 1 Polarization: 0.03 SS G_CDS: 0.51 Total: 0.54 kcal Atomic # 6 Polarization: -6.00 SS G_CDS: 3.92 Total: -2.08 kcal Atomic # 7 Polarization: -65.98 SS G_CDS: -1.72 Total: -67.70 kcal Atomic # 8 Polarization: -40.69 SS G_CDS: -1.46 Total: -42.16 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.40 kcal Total: -69.26 3.27 -66.00 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731915849.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.888 kcal (2) G-P(sol) polarization free energy of solvation -69.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds