Wall clock time and date at job start Sun Mar 29 2020 22:17:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86795 * 119.99959 * 2 1 4 4 H 1.48498 * 109.47517 * 239.99948 * 3 2 1 5 5 H 1.48505 * 109.47332 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46989 * 120.00101 * 3 2 1 7 7 C 1.38663 * 120.00220 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99731 * 179.97438 * 7 2 1 9 9 O 1.34828 * 119.99751 * 359.97438 * 7 2 1 10 10 C 1.35750 * 117.00075 * 174.94575 * 9 7 2 11 11 C 1.38874 * 120.06878 * 185.26035 * 10 9 7 12 12 C 1.38106 * 119.92542 * 179.72264 * 11 10 9 13 13 C 1.38304 * 120.07204 * 0.53100 * 12 11 10 14 14 C 1.50695 * 119.93307 * 179.74764 * 13 12 11 15 15 N 1.46508 * 109.47103 * 270.02170 * 14 13 12 16 16 C 1.34769 * 120.00011 * 179.97438 * 15 14 13 17 17 O 1.21513 * 120.00288 * 0.02562 * 16 15 14 18 18 O 1.34641 * 119.99891 * 179.97438 * 16 15 14 19 19 C 1.38299 * 120.13445 * 359.76820 * 13 12 11 20 20 C 1.38101 * 120.07425 * 359.95492 * 19 13 12 21 21 H 0.96996 * 120.00178 * 359.97438 * 1 2 3 22 22 H 1.07996 * 120.03745 * 0.02562 * 11 10 9 23 23 H 1.07997 * 119.96326 * 180.27708 * 12 11 10 24 24 H 1.08998 * 109.47086 * 30.01537 * 14 13 12 25 25 H 1.08996 * 109.47192 * 150.02113 * 14 13 12 26 26 H 0.97001 * 119.99475 * 0.02562 * 15 14 13 27 27 H 0.96698 * 116.99992 * 180.02562 * 18 16 15 28 28 H 1.07999 * 119.96503 * 179.97438 * 19 13 12 29 29 H 1.07992 * 120.03608 * 180.02562 * 20 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 3.1033 1.6965 -1.2124 5 1 1.2845 2.7465 0.0006 6 1 3.1033 1.6963 1.2125 7 6 2.0089 -1.2008 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3348 -2.3685 -0.0005 10 6 2.0700 -3.5046 -0.1076 11 6 1.4365 -4.7349 -0.2242 12 6 2.1874 -5.8884 -0.3387 13 6 3.5687 -5.8202 -0.3264 14 6 4.3849 -7.0813 -0.4459 15 7 4.6433 -7.6242 0.8901 16 6 5.3595 -8.7572 1.0302 17 8 5.7913 -9.3284 0.0484 18 8 5.5974 -9.2558 2.2580 19 6 4.2024 -4.5970 -0.2043 20 6 3.4573 -3.4394 -0.0951 21 1 -0.4850 0.8400 0.0004 22 1 0.3579 -4.7892 -0.2301 23 1 1.6954 -6.8451 -0.4339 24 1 3.8358 -7.8149 -1.0361 25 1 5.3320 -6.8560 -0.9360 26 1 4.2983 -7.1684 1.6738 27 1 6.1161 -10.0704 2.3081 28 1 5.2812 -4.5470 -0.1945 29 1 3.9527 -2.4846 -0.0001 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000739086904.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:36 Heat of formation + Delta-G solvation = -94.038682 kcal Electronic energy + Delta-G solvation = -15673.700945 eV Core-core repulsion = 12755.473064 eV Total energy + Delta-G solvation = -2918.227881 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 237.083 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.22577 -39.16404 -37.12767 -36.04645 -34.56566 -32.40747 -30.33839 -29.97034 -26.05921 -24.90377 -22.10578 -21.86607 -20.70341 -18.95204 -18.11039 -17.24847 -17.06022 -15.99937 -15.23650 -14.78466 -14.60800 -14.29060 -13.72331 -13.69046 -13.36677 -13.00597 -12.82317 -12.27504 -11.76546 -11.47892 -11.43972 -11.00445 -10.84900 -10.75869 -10.66532 -10.52583 -9.47512 -9.17242 -8.94543 -8.32927 -7.38854 -6.56142 -4.15072 1.88917 2.09336 2.71091 2.83076 3.07377 3.08826 3.11381 3.87953 4.41336 4.75291 4.98396 5.11077 5.19546 5.34724 5.60675 5.74242 5.81803 6.08281 6.29262 6.30183 6.54526 6.60096 6.75843 6.91148 7.09294 7.21932 7.31205 7.46878 7.67001 7.88255 8.39820 8.88873 9.56237 10.61082 Molecular weight = 237.08amu Principal moments of inertia in cm(-1) A = 0.053983 B = 0.004413 C = 0.004253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 518.552944 B = 6343.183861 C = 6581.968573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.041 3.959 3 Si 0.943 3.057 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.269 1.269 7 C -0.395 4.395 8 H 0.094 0.906 9 O -0.171 6.171 10 C 0.162 3.838 11 C -0.196 4.196 12 C -0.051 4.051 13 C -0.220 4.220 14 C 0.196 3.804 15 N -0.699 5.699 16 C 0.657 3.343 17 O -0.588 6.588 18 O -0.532 6.532 19 C -0.047 4.047 20 C -0.238 4.238 21 H 0.272 0.728 22 H 0.119 0.881 23 H 0.114 0.886 24 H 0.070 0.930 25 H 0.070 0.930 26 H 0.409 0.591 27 H 0.425 0.575 28 H 0.109 0.891 29 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.608 -10.207 2.356 12.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C -0.164 4.164 3 Si 0.767 3.233 4 H -0.194 1.194 5 H -0.202 1.202 6 H -0.194 1.194 7 C -0.471 4.471 8 H 0.111 0.889 9 O -0.073 6.073 10 C 0.107 3.893 11 C -0.215 4.215 12 C -0.070 4.070 13 C -0.222 4.222 14 C 0.075 3.925 15 N -0.359 5.359 16 C 0.409 3.591 17 O -0.479 6.479 18 O -0.341 6.341 19 C -0.066 4.066 20 C -0.257 4.257 21 H 0.082 0.918 22 H 0.137 0.863 23 H 0.132 0.868 24 H 0.089 0.911 25 H 0.088 0.912 26 H 0.244 0.756 27 H 0.284 0.716 28 H 0.127 0.873 29 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 7.148 -9.909 1.907 12.366 hybrid contribution 0.658 0.558 0.399 0.951 sum 7.806 -9.351 2.307 12.397 Atomic orbital electron populations 1.70023 1.06028 1.28071 1.45080 1.25334 0.95875 0.98981 0.96256 0.85751 0.78727 0.79526 0.79286 1.19386 1.20182 1.19408 1.21325 0.91880 0.80696 1.53158 0.88897 1.83976 1.34551 1.11587 1.77223 1.19454 0.90333 0.88049 0.91437 1.20216 0.99731 0.90242 1.11332 1.20545 0.92694 0.96927 0.96820 1.19135 0.93551 0.93229 1.16274 1.20006 0.98894 0.92594 0.80957 1.45155 1.55329 1.24045 1.11398 1.17945 0.78530 0.81614 0.81025 1.91034 1.56233 1.61752 1.38857 1.84209 1.72247 1.46292 1.31360 1.20653 0.98454 0.91629 0.95849 1.21162 0.93767 0.98990 1.11818 0.91762 0.86274 0.86827 0.91139 0.91183 0.75612 0.71632 0.87267 0.85334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.40 13.67 55.48 0.76 -23.64 15 2 C 0.04 1.08 5.49 -17.51 -0.10 0.99 15 3 Si 0.94 19.80 29.55 -169.99 -5.02 14.78 15 4 H -0.27 -5.48 7.11 56.52 0.40 -5.08 15 5 H -0.28 -5.70 7.11 56.52 0.40 -5.30 15 6 H -0.27 -5.47 7.11 56.52 0.40 -5.07 15 7 C -0.39 -10.60 9.49 30.89 0.29 -10.31 15 8 H 0.09 2.29 5.20 -52.49 -0.27 2.02 15 9 O -0.17 -4.68 9.76 0.05 0.00 -4.68 15 10 C 0.16 3.70 6.65 -39.11 -0.26 3.44 15 11 C -0.20 -3.86 9.99 -39.39 -0.39 -4.25 15 12 C -0.05 -0.83 9.69 -39.61 -0.38 -1.22 15 13 C -0.22 -3.42 5.25 -104.58 -0.55 -3.97 15 14 C 0.20 2.65 5.80 -5.19 -0.03 2.62 15 15 N -0.70 -8.86 5.55 -66.47 -0.37 -9.23 15 16 C 0.66 8.70 9.12 54.05 0.49 9.19 15 17 O -0.59 -9.64 17.13 -19.28 -0.33 -9.97 15 18 O -0.53 -5.29 13.48 -40.33 -0.54 -5.83 15 19 C -0.05 -0.79 9.69 -39.61 -0.38 -1.17 15 20 C -0.24 -4.83 9.17 -39.39 -0.36 -5.19 15 21 H 0.27 7.11 8.31 -40.82 -0.34 6.77 15 22 H 0.12 2.28 8.06 -52.49 -0.42 1.85 15 23 H 0.11 1.56 8.06 -52.49 -0.42 1.13 15 24 H 0.07 0.94 8.08 -51.93 -0.42 0.52 15 25 H 0.07 0.94 8.08 -51.93 -0.42 0.52 15 26 H 0.41 4.78 8.57 -40.82 -0.35 4.43 15 27 H 0.42 2.22 9.11 45.56 0.42 2.64 15 28 H 0.11 1.58 8.06 -52.49 -0.42 1.15 15 29 H 0.13 2.62 5.64 -52.49 -0.30 2.32 15 LS Contribution 267.98 15.07 4.04 4.04 Total: -1.00 -31.60 267.98 -4.89 -36.49 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: -1.75 Total: 7.92 kcal Atomic # 6 Polarization: -8.20 SS G_CDS: -1.67 Total: -9.87 kcal Atomic # 7 Polarization: -33.26 SS G_CDS: 0.39 Total: -32.87 kcal Atomic # 8 Polarization: -19.61 SS G_CDS: -0.87 Total: -20.49 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.02 Total: 14.78 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -31.60 -4.89 -36.49 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739086904.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.549 kcal (2) G-P(sol) polarization free energy of solvation -31.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds