Wall clock time and date at job start Sun Mar 29 2020 22:17:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86795 * 119.99959 * 2 1 4 4 H 1.48498 * 109.47517 * 239.99948 * 3 2 1 5 5 H 1.48505 * 109.47332 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46989 * 120.00101 * 3 2 1 7 7 C 1.38663 * 120.00220 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99731 * 179.97438 * 7 2 1 9 9 O 1.34828 * 119.99751 * 359.97438 * 7 2 1 10 10 C 1.35750 * 117.00075 * 174.94575 * 9 7 2 11 11 C 1.38874 * 120.06878 * 185.26035 * 10 9 7 12 12 C 1.38106 * 119.92542 * 179.72264 * 11 10 9 13 13 C 1.38304 * 120.07204 * 0.53100 * 12 11 10 14 14 C 1.50695 * 119.93307 * 179.74764 * 13 12 11 15 15 N 1.46508 * 109.47103 * 270.02170 * 14 13 12 16 16 C 1.34769 * 120.00011 * 179.97438 * 15 14 13 17 17 O 1.21513 * 120.00288 * 0.02562 * 16 15 14 18 18 O 1.34641 * 119.99891 * 179.97438 * 16 15 14 19 19 C 1.38299 * 120.13445 * 359.76820 * 13 12 11 20 20 C 1.38101 * 120.07425 * 359.95492 * 19 13 12 21 21 H 0.96996 * 120.00178 * 359.97438 * 1 2 3 22 22 H 1.07996 * 120.03745 * 0.02562 * 11 10 9 23 23 H 1.07997 * 119.96326 * 180.27708 * 12 11 10 24 24 H 1.08998 * 109.47086 * 30.01537 * 14 13 12 25 25 H 1.08996 * 109.47192 * 150.02113 * 14 13 12 26 26 H 0.97001 * 119.99475 * 0.02562 * 15 14 13 27 27 H 0.96698 * 116.99992 * 180.02562 * 18 16 15 28 28 H 1.07999 * 119.96503 * 179.97438 * 19 13 12 29 29 H 1.07992 * 120.03608 * 180.02562 * 20 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 3.1033 1.6965 -1.2124 5 1 1.2845 2.7465 0.0006 6 1 3.1033 1.6963 1.2125 7 6 2.0089 -1.2008 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3348 -2.3685 -0.0005 10 6 2.0700 -3.5046 -0.1076 11 6 1.4365 -4.7349 -0.2242 12 6 2.1874 -5.8884 -0.3387 13 6 3.5687 -5.8202 -0.3264 14 6 4.3849 -7.0813 -0.4459 15 7 4.6433 -7.6242 0.8901 16 6 5.3595 -8.7572 1.0302 17 8 5.7913 -9.3284 0.0484 18 8 5.5974 -9.2558 2.2580 19 6 4.2024 -4.5970 -0.2043 20 6 3.4573 -3.4394 -0.0951 21 1 -0.4850 0.8400 0.0004 22 1 0.3579 -4.7892 -0.2301 23 1 1.6954 -6.8451 -0.4339 24 1 3.8358 -7.8149 -1.0361 25 1 5.3320 -6.8560 -0.9360 26 1 4.2983 -7.1684 1.6738 27 1 6.1161 -10.0704 2.3081 28 1 5.2812 -4.5470 -0.1945 29 1 3.9527 -2.4846 -0.0001 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000739086904.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:36 Heat of formation + Delta-G solvation = -118.787432 kcal Electronic energy + Delta-G solvation = -15674.774131 eV Core-core repulsion = 12755.473064 eV Total energy + Delta-G solvation = -2919.301067 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 237.083 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.28414 -40.73680 -38.64256 -37.06413 -35.77584 -34.28091 -31.84466 -31.39582 -27.73306 -26.42445 -23.64892 -22.96901 -22.09030 -20.05334 -19.80204 -18.81651 -18.23265 -17.05350 -16.55145 -16.36227 -16.15823 -15.68392 -15.44975 -15.10534 -14.59745 -14.32932 -14.23769 -13.74154 -13.44114 -13.02413 -12.53790 -12.49152 -12.35590 -12.25890 -12.13716 -11.80107 -11.20576 -10.80541 -10.23650 -9.80756 -9.03619 -8.48249 -6.16577 0.48245 0.58510 1.36394 1.45116 1.52197 1.68468 1.81400 2.17543 2.82320 3.15389 3.48872 3.77405 3.95377 4.03031 4.17795 4.44769 4.56775 4.74576 4.80561 5.03773 5.14271 5.25545 5.26789 5.52252 5.69263 5.73803 5.85853 6.01362 6.15974 6.46888 6.96437 7.47209 7.75427 8.74220 Molecular weight = 237.08amu Principal moments of inertia in cm(-1) A = 0.053983 B = 0.004413 C = 0.004253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 518.552944 B = 6343.183861 C = 6581.968573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.022 4.022 3 Si 1.018 2.982 4 H -0.258 1.258 5 H -0.273 1.273 6 H -0.257 1.257 7 C -0.415 4.415 8 H 0.104 0.896 9 O -0.228 6.228 10 C 0.124 3.876 11 C -0.206 4.206 12 C -0.040 4.040 13 C -0.187 4.187 14 C 0.201 3.799 15 N -0.696 5.696 16 C 0.663 3.337 17 O -0.621 6.621 18 O -0.522 6.522 19 C -0.042 4.042 20 C -0.246 4.246 21 H 0.273 0.727 22 H 0.116 0.884 23 H 0.150 0.850 24 H 0.081 0.919 25 H 0.078 0.922 26 H 0.415 0.585 27 H 0.445 0.555 28 H 0.142 0.858 29 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.971 -12.093 2.531 15.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.220 4.220 3 Si 0.837 3.163 4 H -0.182 1.182 5 H -0.198 1.198 6 H -0.181 1.181 7 C -0.491 4.491 8 H 0.122 0.878 9 O -0.134 6.134 10 C 0.073 3.927 11 C -0.226 4.226 12 C -0.059 4.059 13 C -0.188 4.188 14 C 0.080 3.920 15 N -0.356 5.356 16 C 0.415 3.585 17 O -0.514 6.514 18 O -0.334 6.334 19 C -0.061 4.061 20 C -0.265 4.265 21 H 0.082 0.918 22 H 0.134 0.866 23 H 0.168 0.832 24 H 0.099 0.901 25 H 0.097 0.903 26 H 0.251 0.749 27 H 0.308 0.692 28 H 0.160 0.840 29 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 9.556 -11.870 2.110 15.384 hybrid contribution 0.084 0.697 0.365 0.791 sum 9.640 -11.173 2.475 14.963 Atomic orbital electron populations 1.70170 1.08030 1.28951 1.48453 1.26592 0.96830 1.02788 0.95762 0.84654 0.77398 0.74288 0.79954 1.18184 1.19778 1.18095 1.21806 0.92608 0.81331 1.53332 0.87827 1.83947 1.36095 1.12686 1.80697 1.20025 0.91679 0.87960 0.93039 1.20461 1.00153 0.90431 1.11527 1.20919 0.93049 0.97097 0.94820 1.19438 0.93451 0.93910 1.11999 1.19936 0.98990 0.91432 0.81673 1.44918 1.55336 1.24141 1.11223 1.17895 0.77962 0.81305 0.81327 1.91028 1.57498 1.62670 1.40185 1.84187 1.72383 1.47494 1.29339 1.20976 0.99966 0.90710 0.94419 1.21262 0.92998 1.00171 1.12088 0.91789 0.86626 0.83223 0.90085 0.90334 0.74859 0.69218 0.84032 0.86107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.19 13.67 21.62 0.30 -54.90 15 2 C -0.02 -1.20 5.49 84.84 0.47 -0.74 15 3 Si 1.02 41.63 29.55 68.60 2.03 43.66 15 4 H -0.26 -9.90 7.11 99.48 0.71 -9.19 15 5 H -0.27 -10.81 7.11 99.48 0.71 -10.11 15 6 H -0.26 -9.82 7.11 99.48 0.71 -9.12 15 7 C -0.41 -23.35 9.49 67.92 0.64 -22.71 15 8 H 0.10 5.30 5.20 -2.91 -0.02 5.28 15 9 O -0.23 -13.24 9.76 -22.72 -0.22 -13.46 15 10 C 0.12 5.82 6.65 22.58 0.15 5.97 15 11 C -0.21 -8.11 9.99 22.39 0.22 -7.88 15 12 C -0.04 -1.20 9.69 22.25 0.22 -0.99 15 13 C -0.19 -5.10 5.25 -19.84 -0.10 -5.20 15 14 C 0.20 4.51 5.80 85.63 0.50 5.00 15 15 N -0.70 -14.71 5.55 -594.62 -3.30 -18.01 15 16 C 0.66 15.06 9.12 129.79 1.18 16.24 15 17 O -0.62 -18.31 17.13 19.80 0.34 -17.97 15 18 O -0.52 -8.40 13.48 -55.50 -0.75 -9.15 15 19 C -0.04 -1.30 9.69 22.25 0.22 -1.08 15 20 C -0.25 -9.89 9.17 22.39 0.21 -9.69 15 21 H 0.27 15.08 8.31 -92.71 -0.77 14.31 15 22 H 0.12 4.53 8.06 -2.91 -0.02 4.51 15 23 H 0.15 3.43 8.06 -2.91 -0.02 3.40 15 24 H 0.08 1.75 8.08 -2.39 -0.02 1.73 15 25 H 0.08 1.73 8.08 -2.39 -0.02 1.71 15 26 H 0.42 7.98 8.57 -92.71 -0.79 7.18 15 27 H 0.44 3.02 9.11 -74.06 -0.67 2.35 15 28 H 0.14 3.48 8.06 -2.91 -0.02 3.45 15 29 H 0.12 4.98 5.64 -2.91 -0.02 4.96 15 Total: -1.00 -72.26 267.98 1.83 -70.43 By element: Atomic # 1 Polarization: 20.74 SS G_CDS: -0.26 Total: 20.48 kcal Atomic # 6 Polarization: -24.77 SS G_CDS: 3.70 Total: -21.08 kcal Atomic # 7 Polarization: -69.90 SS G_CDS: -3.01 Total: -72.91 kcal Atomic # 8 Polarization: -39.95 SS G_CDS: -0.63 Total: -40.58 kcal Atomic # 14 Polarization: 41.63 SS G_CDS: 2.03 Total: 43.66 kcal Total: -72.26 1.83 -70.43 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739086904.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.358 kcal (2) G-P(sol) polarization free energy of solvation -72.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds