Wall clock time and date at job start Sun Mar 29 2020 22:16:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34776 * 120.00634 * 2 1 4 4 S 1.71204 * 119.99500 * 0.02562 * 3 2 1 5 5 N 1.34767 * 120.00425 * 180.02562 * 3 2 1 6 6 C 1.39407 * 120.00139 * 185.68234 * 5 3 2 7 7 C 1.38661 * 119.65181 * 185.62122 * 6 5 3 8 8 C 1.40814 * 118.67525 * 179.72460 * 7 6 5 9 9 C 1.41540 * 120.99773 * 180.25251 * 8 7 6 10 10 H 1.08004 * 119.99706 * 145.68353 * 9 8 7 11 11 C 1.40031 * 120.00450 * 325.68387 * 9 8 7 12 12 N 1.30751 * 119.99354 * 354.65244 * 11 9 8 13 13 Si 1.86791 * 120.00466 * 174.65178 * 11 9 8 14 14 H 1.48507 * 109.47012 * 0.02562 * 13 11 9 15 15 H 1.48497 * 109.47231 * 119.99971 * 13 11 9 16 16 H 1.48500 * 109.47334 * 239.99958 * 13 11 9 17 17 C 1.41167 * 118.00494 * 0.27639 * 8 7 6 18 18 C 1.36593 * 119.13070 * 359.97438 * 17 8 7 19 19 N 1.32073 * 121.26043 * 0.02562 * 18 17 8 20 20 H 1.08996 * 109.47047 * 59.99120 * 1 2 3 21 21 H 1.09002 * 109.47205 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.46545 * 299.99925 * 1 2 3 23 23 H 0.97000 * 119.99563 * 180.02562 * 2 1 3 24 24 H 0.97006 * 119.99943 * 5.67851 * 5 3 2 25 25 H 1.08003 * 120.66119 * 359.97438 * 7 6 5 26 26 H 0.97002 * 119.99192 * 180.02562 * 12 11 9 27 27 H 1.07992 * 120.43547 * 179.97438 * 17 8 7 28 28 H 1.07996 * 119.36725 * 179.97438 * 18 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1671 0.0000 4 16 1.2830 2.6498 0.0007 5 7 3.4867 1.1671 -0.0005 6 6 4.1838 2.3684 0.1190 7 6 5.5654 2.3745 0.0005 8 6 6.2483 3.6003 0.1189 9 6 7.6573 3.6640 0.0009 10 1 8.1229 4.5284 -0.4493 11 6 8.4477 2.6066 0.4678 12 7 7.8938 1.6089 1.1061 13 14 10.2931 2.6214 0.1788 14 1 10.6683 3.8529 -0.5614 15 1 10.9989 2.5951 1.4850 16 1 10.6792 1.4282 -0.6165 17 6 5.4854 4.7635 0.3593 18 6 4.1278 4.6580 0.4665 19 7 3.5197 3.4914 0.3500 20 1 -0.3633 0.5139 -0.8899 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3632 0.5138 0.8900 23 1 1.9499 -0.8401 -0.0004 24 1 3.9716 0.3311 -0.0840 25 1 6.1065 1.4580 -0.1831 26 1 8.4414 0.8766 1.4298 27 1 5.9689 5.7242 0.4572 28 1 3.5406 5.5454 0.6508 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000763168294.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:36 Heat of formation + Delta-G solvation = 66.901733 kcal Electronic energy + Delta-G solvation = -14125.995847 eV Core-core repulsion = 11689.792488 eV Total energy + Delta-G solvation = -2436.203359 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 237.063 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.29048 -37.63736 -34.81752 -33.78710 -30.54191 -29.14827 -26.53592 -25.95093 -23.43866 -21.81157 -21.13458 -18.26994 -18.02851 -16.43631 -15.42508 -14.93053 -14.78068 -14.72312 -14.27676 -13.87670 -13.24545 -12.89218 -12.60938 -12.35156 -11.76356 -11.34737 -11.22713 -10.90613 -10.39427 -10.28985 -10.13523 -9.59591 -9.37098 -8.52219 -7.92998 -7.49060 -6.95697 -6.77646 -5.38581 -4.61594 1.69383 2.57996 2.78335 2.93189 3.02415 3.07761 3.16150 3.26201 3.87700 3.93567 4.70147 5.08702 5.55691 5.61548 5.75670 5.86801 6.20159 6.43914 6.72678 6.75498 6.94275 7.00551 7.11590 7.36472 7.46456 7.72325 7.86537 8.14748 8.45257 8.69540 8.77047 9.62841 10.15250 Molecular weight = 237.06amu Principal moments of inertia in cm(-1) A = 0.042371 B = 0.006565 C = 0.005770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.669674 B = 4263.895643 C = 4851.934003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.704 5.704 3 C 0.529 3.471 4 S -0.548 6.548 5 N -0.607 5.607 6 C 0.311 3.689 7 C -0.218 4.218 8 C 0.143 3.857 9 C -0.464 4.464 10 H 0.082 0.918 11 C 0.075 3.925 12 N -0.809 5.809 13 Si 0.914 3.086 14 H -0.260 1.260 15 H -0.274 1.274 16 H -0.274 1.274 17 C -0.262 4.262 18 C 0.107 3.893 19 N -0.484 5.484 20 H 0.073 0.927 21 H 0.073 0.927 22 H 0.074 0.926 23 H 0.391 0.609 24 H 0.401 0.599 25 H 0.123 0.877 26 H 0.278 0.722 27 H 0.103 0.897 28 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.127 -6.967 -1.537 8.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.337 5.337 3 C 0.174 3.826 4 S -0.418 6.418 5 N -0.230 5.230 6 C 0.084 3.916 7 C -0.244 4.244 8 C 0.134 3.866 9 C -0.496 4.496 10 H 0.100 0.900 11 C -0.141 4.141 12 N -0.436 5.436 13 Si 0.739 3.261 14 H -0.184 1.184 15 H -0.200 1.200 16 H -0.199 1.199 17 C -0.285 4.285 18 C -0.049 4.049 19 N -0.201 5.201 20 H 0.092 0.908 21 H 0.091 0.909 22 H 0.092 0.908 23 H 0.225 0.775 24 H 0.238 0.762 25 H 0.141 0.859 26 H 0.089 0.911 27 H 0.121 0.879 28 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -6.731 -6.165 -1.331 9.224 hybrid contribution 2.842 -1.766 -0.102 3.348 sum -3.888 -7.931 -1.433 8.948 Atomic orbital electron populations 1.21685 0.76732 1.01770 1.04319 1.44928 1.08566 1.05416 1.74788 1.22432 0.85104 0.92840 0.82186 1.92830 1.62616 1.18241 1.68151 1.42235 1.02996 1.09870 1.67900 1.18232 0.87753 0.85022 1.00560 1.21553 0.89831 1.00978 1.12034 1.17553 0.93416 0.89719 0.85890 1.19537 0.90622 1.03444 1.36015 0.90001 1.25876 1.01409 0.94145 0.92675 1.69739 1.37956 1.08028 1.27888 0.86159 0.81701 0.79331 0.78910 1.18399 1.19955 1.19895 1.21931 0.95115 0.99168 1.12293 1.21902 0.91555 0.95141 0.96294 1.69595 1.34758 0.96663 1.19105 0.90822 0.90855 0.90752 0.77452 0.76190 0.85944 0.91089 0.87905 0.85639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.04 10.16 59.85 0.61 1.65 15 2 N -0.70 -8.85 5.72 -68.84 -0.39 -9.25 15 3 C 0.53 9.61 7.94 -86.93 -0.69 8.92 15 4 S -0.55 -12.25 25.37 -107.50 -2.73 -14.98 15 5 N -0.61 -11.45 5.39 -13.03 -0.07 -11.53 15 6 C 0.31 7.32 7.37 -154.72 -1.14 6.18 15 7 C -0.22 -5.39 8.56 -38.45 -0.33 -5.72 15 8 C 0.14 3.70 5.52 -106.55 -0.59 3.11 15 9 C -0.46 -11.86 9.10 -37.65 -0.34 -12.21 15 10 H 0.08 2.02 7.85 -52.48 -0.41 1.60 15 11 C 0.08 1.82 5.34 -17.34 -0.09 1.73 15 12 N -0.81 -19.99 11.03 55.55 0.61 -19.38 15 13 Si 0.91 18.11 29.56 -169.99 -5.03 13.09 15 14 H -0.26 -5.12 7.11 56.52 0.40 -4.72 15 15 H -0.27 -5.40 7.11 56.52 0.40 -5.00 15 16 H -0.27 -5.31 7.11 56.52 0.40 -4.91 15 17 C -0.26 -6.33 9.85 -39.06 -0.38 -6.71 15 18 C 0.11 2.53 11.10 -18.04 -0.20 2.33 15 19 N -0.48 -11.97 6.18 -12.76 -0.08 -12.05 15 20 H 0.07 0.85 7.99 -51.93 -0.42 0.43 15 21 H 0.07 0.48 8.14 -51.93 -0.42 0.06 15 22 H 0.07 0.88 7.99 -51.93 -0.41 0.46 15 23 H 0.39 3.58 8.85 -40.82 -0.36 3.21 15 24 H 0.40 6.13 8.72 -40.82 -0.36 5.78 15 25 H 0.12 3.02 6.58 -52.48 -0.35 2.68 15 26 H 0.28 6.26 8.29 -40.82 -0.34 5.93 15 27 H 0.10 2.29 8.06 -52.49 -0.42 1.86 15 28 H 0.13 2.66 8.06 -52.49 -0.42 2.24 15 LS Contribution 260.05 15.07 3.92 3.92 Total: -1.00 -31.64 260.05 -9.63 -41.27 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: -2.71 Total: 9.62 kcal Atomic # 6 Polarization: 2.44 SS G_CDS: -3.16 Total: -0.72 kcal Atomic # 7 Polarization: -52.28 SS G_CDS: 0.07 Total: -52.21 kcal Atomic # 14 Polarization: 18.11 SS G_CDS: -5.03 Total: 13.09 kcal Atomic # 16 Polarization: -12.25 SS G_CDS: -2.73 Total: -14.98 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -31.64 -9.63 -41.27 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000763168294.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.169 kcal (2) G-P(sol) polarization free energy of solvation -31.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.267 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds