Wall clock time and date at job start Sun Mar 29 2020 22:16:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34776 * 120.00634 * 2 1 4 4 S 1.71204 * 119.99500 * 0.02562 * 3 2 1 5 5 N 1.34767 * 120.00425 * 180.02562 * 3 2 1 6 6 C 1.39407 * 120.00139 * 185.68234 * 5 3 2 7 7 C 1.38661 * 119.65181 * 185.62122 * 6 5 3 8 8 C 1.40814 * 118.67525 * 179.72460 * 7 6 5 9 9 C 1.41540 * 120.99773 * 180.25251 * 8 7 6 10 10 H 1.08004 * 119.99706 * 145.68353 * 9 8 7 11 11 C 1.40031 * 120.00450 * 325.68387 * 9 8 7 12 12 N 1.30751 * 119.99354 * 354.65244 * 11 9 8 13 13 Si 1.86791 * 120.00466 * 174.65178 * 11 9 8 14 14 H 1.48507 * 109.47012 * 0.02562 * 13 11 9 15 15 H 1.48497 * 109.47231 * 119.99971 * 13 11 9 16 16 H 1.48500 * 109.47334 * 239.99958 * 13 11 9 17 17 C 1.41167 * 118.00494 * 0.27639 * 8 7 6 18 18 C 1.36593 * 119.13070 * 359.97438 * 17 8 7 19 19 N 1.32073 * 121.26043 * 0.02562 * 18 17 8 20 20 H 1.08996 * 109.47047 * 59.99120 * 1 2 3 21 21 H 1.09002 * 109.47205 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.46545 * 299.99925 * 1 2 3 23 23 H 0.97000 * 119.99563 * 180.02562 * 2 1 3 24 24 H 0.97006 * 119.99943 * 5.67851 * 5 3 2 25 25 H 1.08003 * 120.66119 * 359.97438 * 7 6 5 26 26 H 0.97002 * 119.99192 * 180.02562 * 12 11 9 27 27 H 1.07992 * 120.43547 * 179.97438 * 17 8 7 28 28 H 1.07996 * 119.36725 * 179.97438 * 18 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1671 0.0000 4 16 1.2830 2.6498 0.0007 5 7 3.4867 1.1671 -0.0005 6 6 4.1838 2.3684 0.1190 7 6 5.5654 2.3745 0.0005 8 6 6.2483 3.6003 0.1189 9 6 7.6573 3.6640 0.0009 10 1 8.1229 4.5284 -0.4493 11 6 8.4477 2.6066 0.4678 12 7 7.8938 1.6089 1.1061 13 14 10.2931 2.6214 0.1788 14 1 10.6683 3.8529 -0.5614 15 1 10.9989 2.5951 1.4850 16 1 10.6792 1.4282 -0.6165 17 6 5.4854 4.7635 0.3593 18 6 4.1278 4.6580 0.4665 19 7 3.5197 3.4914 0.3500 20 1 -0.3633 0.5139 -0.8899 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3632 0.5138 0.8900 23 1 1.9499 -0.8401 -0.0004 24 1 3.9716 0.3311 -0.0840 25 1 6.1065 1.4580 -0.1831 26 1 8.4414 0.8766 1.4298 27 1 5.9689 5.7242 0.4572 28 1 3.5406 5.5454 0.6508 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000763168294.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:36 Heat of formation + Delta-G solvation = 47.119198 kcal Electronic energy + Delta-G solvation = -14126.853682 eV Core-core repulsion = 11689.792488 eV Total energy + Delta-G solvation = -2437.061194 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 237.063 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.98004 -39.18911 -36.35568 -35.54013 -32.41690 -30.83349 -28.07610 -27.50357 -24.92959 -23.57511 -22.90508 -19.92892 -19.57007 -18.12311 -17.13198 -16.55557 -16.16471 -16.12055 -16.02443 -15.58306 -14.71208 -14.64496 -14.33633 -13.43088 -13.18883 -12.95653 -12.88380 -12.67075 -12.09392 -11.99716 -11.86281 -11.23969 -10.91392 -10.33856 -9.82941 -9.12678 -8.72096 -8.58084 -7.14457 -6.53687 0.11888 1.03546 1.10804 1.15378 1.41935 1.55514 1.57523 1.65217 2.22746 2.65791 2.85688 3.73042 4.03365 4.38829 4.65490 4.65998 4.69262 4.90271 4.98162 5.03358 5.24308 5.31983 5.45769 5.57096 5.95753 5.97137 6.25117 6.43792 6.57158 6.80981 6.88199 7.79137 8.35942 Molecular weight = 237.06amu Principal moments of inertia in cm(-1) A = 0.042371 B = 0.006565 C = 0.005770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.669674 B = 4263.895643 C = 4851.934003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.669 5.669 3 C 0.549 3.451 4 S -0.641 6.641 5 N -0.601 5.601 6 C 0.312 3.688 7 C -0.231 4.231 8 C 0.115 3.885 9 C -0.494 4.494 10 H 0.081 0.919 11 C 0.037 3.963 12 N -0.832 5.832 13 Si 0.987 3.013 14 H -0.260 1.260 15 H -0.269 1.269 16 H -0.264 1.264 17 C -0.273 4.273 18 C 0.101 3.899 19 N -0.499 5.499 20 H 0.065 0.935 21 H 0.126 0.874 22 H 0.063 0.937 23 H 0.416 0.584 24 H 0.420 0.580 25 H 0.119 0.881 26 H 0.288 0.712 27 H 0.115 0.885 28 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.692 -8.965 -1.618 10.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.300 5.300 3 C 0.190 3.810 4 S -0.512 6.512 5 N -0.227 5.227 6 C 0.083 3.917 7 C -0.257 4.257 8 C 0.106 3.894 9 C -0.526 4.526 10 H 0.099 0.901 11 C -0.177 4.177 12 N -0.460 5.460 13 Si 0.808 3.192 14 H -0.183 1.183 15 H -0.194 1.194 16 H -0.188 1.188 17 C -0.297 4.297 18 C -0.055 4.055 19 N -0.217 5.217 20 H 0.083 0.917 21 H 0.145 0.855 22 H 0.081 0.919 23 H 0.255 0.745 24 H 0.260 0.740 25 H 0.137 0.863 26 H 0.098 0.902 27 H 0.133 0.867 28 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -6.338 -8.244 -1.414 10.495 hybrid contribution 2.609 -1.301 -0.069 2.916 sum -3.728 -9.545 -1.483 10.354 Atomic orbital electron populations 1.21987 0.74698 1.04932 1.03345 1.44910 1.09689 1.04574 1.70817 1.22039 0.84525 0.93192 0.81265 1.93035 1.63708 1.22064 1.72421 1.41968 1.03288 1.09349 1.68057 1.18371 0.87808 0.86062 0.99420 1.21510 0.90406 1.00586 1.13203 1.17950 0.94200 0.90751 0.86482 1.19786 0.91014 1.04488 1.37332 0.90087 1.26698 1.05892 0.93309 0.91788 1.69778 1.39906 1.08514 1.27780 0.85068 0.75681 0.79505 0.78911 1.18317 1.19392 1.18836 1.22092 0.95414 0.99430 1.12738 1.22268 0.91701 0.95832 0.95669 1.69745 1.35078 0.97229 1.19610 0.91653 0.85543 0.91869 0.74522 0.73994 0.86311 0.90167 0.86727 0.83712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.66 10.16 127.77 1.30 2.96 15 2 N -0.67 -14.67 5.72 -371.70 -2.12 -16.80 15 3 C 0.55 19.13 7.94 179.06 1.42 20.56 15 4 S -0.64 -28.83 25.37 -56.49 -1.43 -30.27 15 5 N -0.60 -21.95 5.39 -195.13 -1.05 -23.01 15 6 C 0.31 14.69 7.37 132.78 0.98 15.67 15 7 C -0.23 -11.55 8.56 23.00 0.20 -11.35 15 8 C 0.11 6.04 5.52 -21.12 -0.12 5.93 15 9 C -0.49 -25.54 9.10 23.52 0.21 -25.33 15 10 H 0.08 4.05 7.85 -2.91 -0.02 4.02 15 11 C 0.04 1.79 5.34 85.29 0.46 2.25 15 12 N -0.83 -40.81 11.03 21.84 0.24 -40.57 15 13 Si 0.99 36.40 29.56 68.60 2.03 38.43 15 14 H -0.26 -9.45 7.11 99.48 0.71 -8.74 15 15 H -0.27 -9.64 7.11 99.48 0.71 -8.93 15 16 H -0.26 -9.25 7.11 99.48 0.71 -8.54 15 17 C -0.27 -13.46 9.85 22.60 0.22 -13.24 15 18 C 0.10 4.84 11.10 84.27 0.94 5.78 15 19 N -0.50 -24.94 6.18 -194.29 -1.20 -26.14 15 20 H 0.06 1.36 7.99 -2.39 -0.02 1.34 15 21 H 0.13 1.00 8.14 -2.39 -0.02 0.98 15 22 H 0.06 1.36 7.99 -2.39 -0.02 1.34 15 23 H 0.42 5.77 8.85 -92.71 -0.82 4.95 15 24 H 0.42 12.00 8.72 -92.70 -0.81 11.19 15 25 H 0.12 5.91 6.58 -2.91 -0.02 5.89 15 26 H 0.29 12.67 8.29 -92.71 -0.77 11.91 15 27 H 0.11 5.18 8.06 -2.91 -0.02 5.16 15 28 H 0.15 6.19 8.06 -2.91 -0.02 6.17 15 Total: -1.00 -70.03 260.05 1.64 -68.39 By element: Atomic # 1 Polarization: 27.15 SS G_CDS: -0.42 Total: 26.73 kcal Atomic # 6 Polarization: -2.38 SS G_CDS: 5.61 Total: 3.23 kcal Atomic # 7 Polarization: -102.37 SS G_CDS: -4.14 Total: -106.51 kcal Atomic # 14 Polarization: 36.40 SS G_CDS: 2.03 Total: 38.43 kcal Atomic # 16 Polarization: -28.83 SS G_CDS: -1.43 Total: -30.27 kcal Total: -70.03 1.64 -68.39 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000763168294.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.512 kcal (2) G-P(sol) polarization free energy of solvation -70.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.393 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds