Wall clock time and date at job start Sun Mar 29 2020 21:52:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 C 1.52999 * 109.47159 * 88.18784 * 3 2 1 5 5 C 1.53007 * 109.47097 * 179.97438 * 4 3 2 6 6 N 1.46899 * 109.47232 * 179.97438 * 5 4 3 7 7 C 1.46954 * 111.00136 * 170.00079 * 6 5 4 8 8 C 1.53050 * 109.36493 * 183.19039 * 7 6 5 9 9 N 1.46960 * 109.36183 * 301.59865 * 8 7 6 10 10 C 1.46899 * 110.99909 * 183.18613 * 9 8 7 11 11 C 1.50702 * 109.47509 * 169.99961 * 10 9 8 12 12 H 1.08002 * 119.99441 * 0.02562 * 11 10 9 13 13 C 1.37871 * 120.00075 * 180.02562 * 11 10 9 14 14 N 1.31514 * 120.00481 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99886 * 179.73007 * 13 11 10 16 16 H 1.48494 * 109.47225 * 180.27306 * 15 13 11 17 17 H 1.48506 * 109.46866 * 300.27330 * 15 13 11 18 18 H 1.48498 * 109.47306 * 60.26614 * 15 13 11 19 19 C 1.46962 * 110.88081 * 59.32313 * 9 8 7 20 20 C 1.46961 * 110.99813 * 293.80558 * 6 5 4 21 21 H 4.44643 * 5.63307 * 180.02562 * 4 1 2 22 22 H 1.09008 * 109.47385 * 328.18752 * 3 2 1 23 23 H 1.09004 * 109.46998 * 208.19227 * 3 2 1 24 24 H 1.09001 * 109.47123 * 60.00134 * 4 3 2 25 25 H 1.08993 * 109.47306 * 299.99680 * 4 3 2 26 26 H 1.09001 * 109.46671 * 60.00289 * 5 4 3 27 27 H 1.08993 * 109.47135 * 300.00218 * 5 4 3 28 28 H 1.09002 * 109.48561 * 63.22583 * 7 6 5 29 29 H 1.08995 * 109.49120 * 303.15742 * 7 6 5 30 30 H 1.08996 * 109.48853 * 181.63309 * 8 7 6 31 31 H 1.08996 * 109.49241 * 61.56585 * 8 7 6 32 32 H 1.09009 * 109.47165 * 50.00381 * 10 9 8 33 33 H 1.08998 * 109.47687 * 290.00832 * 10 9 8 34 34 H 0.97005 * 119.99656 * 359.72741 * 14 13 11 35 35 H 1.09002 * 109.48757 * 60.64076 * 19 9 8 36 36 H 1.09004 * 109.48878 * 180.70798 * 19 9 8 37 37 H 1.08998 * 109.48972 * 296.77446 * 20 6 5 38 38 H 1.08996 * 109.49248 * 56.84241 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 6 3.1560 -0.0447 -1.4418 5 6 4.6860 -0.0434 -1.4418 6 7 5.1758 -0.0876 -2.8260 7 6 6.6249 0.1503 -2.8798 8 6 7.0812 0.1753 -4.3405 9 7 6.7358 -1.1016 -4.9808 10 6 7.2255 -1.1458 -6.3651 11 6 7.0746 -2.5439 -6.9070 12 1 6.6564 -3.3217 -6.2853 13 6 7.4705 -2.8299 -8.1963 14 7 7.9793 -1.8826 -8.9535 15 14 7.2905 -4.5647 -8.8655 16 1 7.7909 -4.6106 -10.2628 17 1 8.0783 -5.5031 -8.0263 18 1 5.8592 -4.9594 -8.8390 19 6 5.2866 -1.3394 -4.9270 20 6 4.8303 -1.3645 -3.4663 21 1 -1.0500 0.0002 0.0000 22 1 3.0097 -0.8725 0.5418 23 1 3.0089 0.9066 0.4855 24 1 2.7923 0.8284 -1.9835 25 1 2.7931 -0.9506 -1.9272 26 1 5.0501 -0.9164 -0.8999 27 1 5.0486 0.8627 -0.9565 28 1 7.1444 -0.6484 -2.3502 29 1 6.8541 1.1071 -2.4109 30 1 8.1603 0.3227 -4.3819 31 1 6.5821 0.9910 -4.8635 32 1 8.2768 -0.8588 -6.3880 33 1 6.6468 -0.4543 -6.9775 34 1 8.0724 -0.9817 -8.6062 35 1 4.7671 -0.5408 -5.4566 36 1 5.0574 -2.2963 -5.3961 37 1 5.3294 -2.1803 -2.9434 38 1 3.7511 -1.5119 -3.4249 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000766938077.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:23 Heat of formation + Delta-G solvation = 49.789708 kcal Electronic energy + Delta-G solvation = -16461.227736 eV Core-core repulsion = 13918.621573 eV Total energy + Delta-G solvation = -2542.606163 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.94350 -36.27232 -34.59478 -32.76452 -31.39051 -30.46169 -28.10478 -25.84144 -24.00709 -23.29572 -21.75773 -21.04785 -19.27703 -18.29287 -16.76694 -15.89694 -15.66842 -14.70326 -14.51427 -14.26562 -14.14296 -13.73695 -13.55913 -13.52279 -12.75554 -12.48593 -12.09911 -11.76378 -11.54205 -11.22587 -10.99415 -10.94911 -10.77540 -10.60609 -10.38747 -10.32154 -10.24928 -10.09749 -9.91206 -8.65917 -8.36465 -8.16414 -7.31047 -6.35656 -4.04380 2.62265 2.65971 3.45214 3.47676 3.66205 3.96489 4.25850 4.53187 4.80821 4.87047 5.04084 5.12088 5.30952 5.36538 5.40091 5.45993 5.51423 5.57184 5.72099 5.78028 5.84625 5.85430 5.97284 6.02829 6.12819 6.18410 6.36097 6.53107 6.63524 6.99285 7.09276 7.22520 7.27846 7.43923 7.81392 8.00984 8.33870 8.59419 8.88413 9.66530 11.03578 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.036309 B = 0.004444 C = 0.004095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.964566 B = 6298.856314 C = 6835.776582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.182 4.182 3 C -0.013 4.013 4 C -0.112 4.112 5 C 0.056 3.944 6 N -0.541 5.541 7 C 0.062 3.938 8 C 0.054 3.946 9 N -0.533 5.533 10 C 0.183 3.817 11 C -0.588 4.588 12 H 0.056 0.944 13 C 0.013 3.987 14 N -0.914 5.914 15 Si 1.072 2.928 16 H -0.283 1.283 17 H -0.287 1.287 18 H -0.288 1.288 19 C 0.068 3.932 20 C 0.056 3.944 21 H 0.216 0.784 22 H 0.085 0.915 23 H 0.086 0.914 24 H 0.074 0.926 25 H 0.068 0.932 26 H 0.033 0.967 27 H 0.072 0.928 28 H 0.039 0.961 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.030 0.970 32 H 0.019 0.981 33 H -0.019 1.019 34 H 0.267 0.733 35 H 0.027 0.973 36 H 0.087 0.913 37 H 0.038 0.962 38 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.162 4.143 16.594 19.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.182 4.182 3 C -0.050 4.050 4 C -0.150 4.150 5 C -0.072 4.072 6 N -0.266 5.266 7 C -0.066 4.066 8 C -0.075 4.075 9 N -0.258 5.258 10 C 0.058 3.942 11 C -0.627 4.627 12 H 0.074 0.926 13 C -0.190 4.190 14 N -0.551 5.551 15 Si 0.901 3.099 16 H -0.208 1.208 17 H -0.214 1.214 18 H -0.215 1.215 19 C -0.061 4.061 20 C -0.072 4.072 21 H 0.233 0.767 22 H 0.103 0.897 23 H 0.104 0.896 24 H 0.093 0.907 25 H 0.087 0.913 26 H 0.052 0.948 27 H 0.091 0.909 28 H 0.057 0.943 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.048 0.952 32 H 0.037 0.963 33 H -0.002 1.002 34 H 0.077 0.923 35 H 0.046 0.954 36 H 0.105 0.895 37 H 0.057 0.943 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -8.871 3.199 15.234 17.916 hybrid contribution -0.452 1.033 1.388 1.788 sum -9.323 4.232 16.622 19.522 Atomic orbital electron populations 1.24894 0.95989 1.01520 1.00984 1.23170 0.94619 1.00115 1.00284 1.18726 0.84678 1.03229 0.98352 1.21552 0.95043 1.03574 0.94799 1.22068 0.94677 1.00759 0.89717 1.62147 1.14349 1.34128 1.15975 1.22130 0.86967 1.00071 0.97412 1.22094 0.99810 0.92136 0.93414 1.62197 1.12779 1.29738 1.21049 1.19803 0.94354 0.97605 0.82466 1.21965 1.45569 0.94908 1.00244 0.92551 1.25856 0.93830 1.05596 0.93715 1.70795 1.42208 1.03038 1.39059 0.83492 0.76324 0.74005 0.76125 1.20834 1.21393 1.21469 1.21995 0.88694 1.01715 0.93659 1.22292 0.99775 0.89317 0.95819 0.76749 0.89669 0.89556 0.90730 0.91336 0.94838 0.90913 0.94293 0.91129 0.91108 0.95196 0.96253 1.00155 0.92323 0.95430 0.89490 0.94330 0.90885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -2.07 19.25 29.55 0.57 -1.50 16 2 C -0.18 -1.91 13.34 -37.12 -0.50 -2.41 16 3 C -0.01 -0.11 5.70 -29.52 -0.17 -0.28 16 4 C -0.11 -1.17 5.10 -26.73 -0.14 -1.31 16 5 C 0.06 0.63 4.96 -3.82 -0.02 0.61 16 6 N -0.54 -8.05 4.71 -234.47 -1.10 -9.15 16 7 C 0.06 0.95 5.61 -3.77 -0.02 0.93 16 8 C 0.05 1.02 5.61 -3.77 -0.02 1.00 16 9 N -0.53 -11.92 4.70 -235.90 -1.11 -13.03 16 10 C 0.18 4.87 4.03 -4.98 -0.02 4.85 16 11 C -0.59 -16.92 8.47 -34.44 -0.29 -17.21 16 12 H 0.06 1.61 7.13 -52.49 -0.37 1.24 16 13 C 0.01 0.39 5.46 -17.82 -0.10 0.30 16 14 N -0.91 -28.20 13.65 55.43 0.76 -27.45 16 15 Si 1.07 25.50 29.90 -169.99 -5.08 20.42 16 16 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 17 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 18 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 19 C 0.07 1.38 5.43 -3.76 -0.02 1.36 16 20 C 0.06 0.91 5.41 -3.76 -0.02 0.89 16 21 H 0.22 1.32 7.80 -54.09 -0.42 0.90 16 22 H 0.09 0.67 8.14 -51.92 -0.42 0.24 16 23 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 25 H 0.07 0.78 6.49 -51.93 -0.34 0.44 16 26 H 0.03 0.37 8.12 -51.93 -0.42 -0.05 16 27 H 0.07 0.73 8.03 -51.93 -0.42 0.31 16 28 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.07 0.91 8.07 -51.93 -0.42 0.49 16 30 H 0.07 1.28 8.07 -51.93 -0.42 0.86 16 31 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.02 0.54 7.90 -51.92 -0.41 0.13 16 33 H -0.02 -0.54 7.98 -51.93 -0.41 -0.95 16 34 H 0.27 8.21 7.22 -40.82 -0.29 7.91 16 35 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.09 1.90 6.79 -51.93 -0.35 1.55 16 37 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.07 1.06 6.34 -51.93 -0.33 0.73 16 LS Contribution 309.60 15.07 4.67 4.67 Total: -1.00 -31.75 309.60 -8.98 -40.73 By element: Atomic # 1 Polarization: 2.95 SS G_CDS: -6.37 Total: -3.41 kcal Atomic # 6 Polarization: -12.03 SS G_CDS: -0.74 Total: -12.77 kcal Atomic # 7 Polarization: -48.17 SS G_CDS: -1.46 Total: -49.63 kcal Atomic # 14 Polarization: 25.50 SS G_CDS: -5.08 Total: 20.42 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -31.75 -8.98 -40.73 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000766938077.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.521 kcal (2) G-P(sol) polarization free energy of solvation -31.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.731 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds