Wall clock time and date at job start Sun Mar 29 2020 21:52:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 C 1.52999 * 109.47159 * 88.18784 * 3 2 1 5 5 C 1.53007 * 109.47097 * 179.97438 * 4 3 2 6 6 N 1.46899 * 109.47232 * 179.97438 * 5 4 3 7 7 C 1.46954 * 111.00136 * 170.00079 * 6 5 4 8 8 C 1.53050 * 109.36493 * 183.19039 * 7 6 5 9 9 N 1.46960 * 109.36183 * 301.59865 * 8 7 6 10 10 C 1.46899 * 110.99909 * 183.18613 * 9 8 7 11 11 C 1.50702 * 109.47509 * 169.99961 * 10 9 8 12 12 H 1.08002 * 119.99441 * 0.02562 * 11 10 9 13 13 C 1.37871 * 120.00075 * 180.02562 * 11 10 9 14 14 N 1.31514 * 120.00481 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99886 * 179.73007 * 13 11 10 16 16 H 1.48494 * 109.47225 * 180.27306 * 15 13 11 17 17 H 1.48506 * 109.46866 * 300.27330 * 15 13 11 18 18 H 1.48498 * 109.47306 * 60.26614 * 15 13 11 19 19 C 1.46962 * 110.88081 * 59.32313 * 9 8 7 20 20 C 1.46961 * 110.99813 * 293.80558 * 6 5 4 21 21 H 4.44643 * 5.63307 * 180.02562 * 4 1 2 22 22 H 1.09008 * 109.47385 * 328.18752 * 3 2 1 23 23 H 1.09004 * 109.46998 * 208.19227 * 3 2 1 24 24 H 1.09001 * 109.47123 * 60.00134 * 4 3 2 25 25 H 1.08993 * 109.47306 * 299.99680 * 4 3 2 26 26 H 1.09001 * 109.46671 * 60.00289 * 5 4 3 27 27 H 1.08993 * 109.47135 * 300.00218 * 5 4 3 28 28 H 1.09002 * 109.48561 * 63.22583 * 7 6 5 29 29 H 1.08995 * 109.49120 * 303.15742 * 7 6 5 30 30 H 1.08996 * 109.48853 * 181.63309 * 8 7 6 31 31 H 1.08996 * 109.49241 * 61.56585 * 8 7 6 32 32 H 1.09009 * 109.47165 * 50.00381 * 10 9 8 33 33 H 1.08998 * 109.47687 * 290.00832 * 10 9 8 34 34 H 0.97005 * 119.99656 * 359.72741 * 14 13 11 35 35 H 1.09002 * 109.48757 * 60.64076 * 19 9 8 36 36 H 1.09004 * 109.48878 * 180.70798 * 19 9 8 37 37 H 1.08998 * 109.48972 * 296.77446 * 20 6 5 38 38 H 1.08996 * 109.49248 * 56.84241 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 6 3.1560 -0.0447 -1.4418 5 6 4.6860 -0.0434 -1.4418 6 7 5.1758 -0.0876 -2.8260 7 6 6.6249 0.1503 -2.8798 8 6 7.0812 0.1753 -4.3405 9 7 6.7358 -1.1016 -4.9808 10 6 7.2255 -1.1458 -6.3651 11 6 7.0746 -2.5439 -6.9070 12 1 6.6564 -3.3217 -6.2853 13 6 7.4705 -2.8299 -8.1963 14 7 7.9793 -1.8826 -8.9535 15 14 7.2905 -4.5647 -8.8655 16 1 7.7909 -4.6106 -10.2628 17 1 8.0783 -5.5031 -8.0263 18 1 5.8592 -4.9594 -8.8390 19 6 5.2866 -1.3394 -4.9270 20 6 4.8303 -1.3645 -3.4663 21 1 -1.0500 0.0002 0.0000 22 1 3.0097 -0.8725 0.5418 23 1 3.0089 0.9066 0.4855 24 1 2.7923 0.8284 -1.9835 25 1 2.7931 -0.9506 -1.9272 26 1 5.0501 -0.9164 -0.8999 27 1 5.0486 0.8627 -0.9565 28 1 7.1444 -0.6484 -2.3502 29 1 6.8541 1.1071 -2.4109 30 1 8.1603 0.3227 -4.3819 31 1 6.5821 0.9910 -4.8635 32 1 8.2768 -0.8588 -6.3880 33 1 6.6468 -0.4543 -6.9775 34 1 8.0724 -0.9817 -8.6062 35 1 4.7671 -0.5408 -5.4566 36 1 5.0574 -2.2963 -5.3961 37 1 5.3294 -2.1803 -2.9434 38 1 3.7511 -1.5119 -3.4249 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000766938077.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:23 Heat of formation + Delta-G solvation = 28.254043 kcal Electronic energy + Delta-G solvation = -16462.161592 eV Core-core repulsion = 13918.621573 eV Total energy + Delta-G solvation = -2543.540019 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.32860 -37.54133 -35.84266 -34.64479 -32.43861 -31.87413 -29.63994 -27.36383 -25.53111 -24.75424 -23.59981 -22.07717 -20.74037 -18.99164 -18.93596 -17.28570 -16.59449 -16.07422 -15.79033 -15.72365 -15.65464 -15.47971 -15.02991 -14.67695 -13.99398 -13.70736 -13.58315 -13.36828 -13.00650 -12.83070 -12.56126 -12.41875 -12.26343 -12.03100 -11.93402 -11.71465 -11.48117 -11.08333 -10.94776 -10.78064 -10.59368 -9.36560 -9.15596 -8.70661 -6.41431 1.52889 1.61719 1.81372 1.88127 1.93819 2.55163 2.88695 3.09805 3.17713 3.54776 3.91382 3.97013 4.11102 4.18375 4.27764 4.36067 4.40098 4.46645 4.56142 4.65187 4.70264 4.76253 4.80901 4.81944 4.88668 4.93934 5.04188 5.09441 5.20696 5.23294 5.32914 5.73227 5.92053 6.01405 6.14965 6.34650 6.38562 6.60701 6.73252 7.39650 8.68251 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.036309 B = 0.004444 C = 0.004095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.964566 B = 6298.856314 C = 6835.776582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.216 4.216 3 C -0.008 4.008 4 C -0.104 4.104 5 C 0.059 3.941 6 N -0.552 5.552 7 C 0.072 3.928 8 C 0.051 3.949 9 N -0.540 5.540 10 C 0.195 3.805 11 C -0.600 4.600 12 H 0.055 0.945 13 C -0.038 4.038 14 N -0.937 5.937 15 Si 1.123 2.877 16 H -0.283 1.283 17 H -0.269 1.269 18 H -0.268 1.268 19 C 0.069 3.931 20 C 0.070 3.930 21 H 0.240 0.760 22 H 0.097 0.903 23 H 0.102 0.898 24 H 0.063 0.937 25 H 0.057 0.943 26 H 0.043 0.957 27 H 0.094 0.906 28 H 0.040 0.960 29 H 0.103 0.897 30 H 0.072 0.928 31 H 0.020 0.980 32 H 0.000 1.000 33 H -0.047 1.047 34 H 0.252 0.748 35 H 0.013 0.987 36 H 0.066 0.934 37 H 0.037 0.963 38 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.038 3.581 18.636 21.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.216 4.216 3 C -0.045 4.045 4 C -0.142 4.142 5 C -0.068 4.068 6 N -0.277 5.277 7 C -0.056 4.056 8 C -0.078 4.078 9 N -0.265 5.265 10 C 0.068 3.932 11 C -0.638 4.638 12 H 0.073 0.927 13 C -0.235 4.235 14 N -0.575 5.575 15 Si 0.943 3.057 16 H -0.208 1.208 17 H -0.194 1.194 18 H -0.193 1.193 19 C -0.059 4.059 20 C -0.058 4.058 21 H 0.257 0.743 22 H 0.115 0.885 23 H 0.120 0.880 24 H 0.081 0.919 25 H 0.075 0.925 26 H 0.061 0.939 27 H 0.112 0.888 28 H 0.058 0.942 29 H 0.121 0.879 30 H 0.090 0.910 31 H 0.039 0.961 32 H 0.018 0.982 33 H -0.029 1.029 34 H 0.062 0.938 35 H 0.031 0.969 36 H 0.084 0.916 37 H 0.055 0.945 38 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -9.760 2.661 17.323 20.060 hybrid contribution -0.218 1.287 0.793 1.527 sum -9.979 3.948 18.116 21.055 Atomic orbital electron populations 1.25696 0.97032 1.00795 0.99998 1.23751 0.95676 1.00927 1.01222 1.18736 0.83944 1.04588 0.97268 1.21446 0.94453 1.02453 0.95847 1.22150 0.94986 1.02213 0.87479 1.62130 1.14085 1.33015 1.18476 1.22070 0.87244 1.01865 0.94465 1.22227 1.00021 0.89936 0.95585 1.62153 1.14053 1.32127 1.18190 1.19513 0.92861 0.96066 0.84762 1.22275 1.45200 0.95728 1.00614 0.92655 1.27482 0.92695 1.08971 0.94340 1.70930 1.44065 1.02922 1.39577 0.82872 0.77690 0.69506 0.75642 1.20824 1.19403 1.19319 1.21983 0.87373 0.99910 0.96672 1.22105 1.00750 0.90232 0.92760 0.74320 0.88492 0.87971 0.91866 0.92455 0.93898 0.88814 0.94221 0.87900 0.90994 0.96146 0.98216 1.02936 0.93831 0.96915 0.91604 0.94469 0.88958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.76 19.25 74.32 1.43 -2.33 16 2 C -0.22 -4.13 13.34 31.13 0.42 -3.71 16 3 C -0.01 -0.13 5.70 28.79 0.16 0.04 16 4 C -0.10 -1.94 5.10 30.60 0.16 -1.78 16 5 C 0.06 1.14 4.96 86.31 0.43 1.57 16 6 N -0.55 -15.21 4.71 -895.72 -4.22 -19.43 16 7 C 0.07 2.02 5.61 86.31 0.48 2.51 16 8 C 0.05 1.89 5.61 86.31 0.48 2.38 16 9 N -0.54 -24.62 4.70 -900.25 -4.23 -28.85 16 10 C 0.19 10.76 4.03 85.56 0.34 11.11 16 11 C -0.60 -35.26 8.47 25.60 0.22 -35.04 16 12 H 0.06 3.20 7.13 -2.91 -0.02 3.18 16 13 C -0.04 -2.23 5.46 84.65 0.46 -1.76 16 14 N -0.94 -59.21 13.65 21.45 0.29 -58.92 16 15 Si 1.12 51.00 29.90 68.60 2.05 53.05 16 16 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 17 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 18 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 19 C 0.07 2.85 5.43 86.31 0.47 3.32 16 20 C 0.07 2.18 5.41 86.31 0.47 2.64 16 21 H 0.24 2.38 7.80 -4.42 -0.03 2.35 16 22 H 0.10 1.23 8.14 -2.38 -0.02 1.21 16 23 H 0.10 1.21 8.14 -2.38 -0.02 1.19 16 24 H 0.06 1.32 8.14 -2.39 -0.02 1.31 16 25 H 0.06 1.19 6.49 -2.39 -0.02 1.17 16 26 H 0.04 0.79 8.12 -2.39 -0.02 0.77 16 27 H 0.09 1.48 8.03 -2.39 -0.02 1.46 16 28 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.10 2.29 8.07 -2.39 -0.02 2.27 16 30 H 0.07 2.62 8.07 -2.39 -0.02 2.60 16 31 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.00 -0.01 7.90 -2.38 -0.02 -0.03 16 33 H -0.05 -2.80 7.98 -2.39 -0.02 -2.82 16 34 H 0.25 16.22 7.22 -92.70 -0.67 15.55 16 35 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 36 H 0.07 2.94 6.79 -2.39 -0.02 2.93 16 37 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.09 2.53 6.34 -2.39 -0.02 2.52 16 Total: -1.00 -69.75 309.60 0.51 -69.23 By element: Atomic # 1 Polarization: 4.88 SS G_CDS: 1.10 Total: 5.98 kcal Atomic # 6 Polarization: -26.58 SS G_CDS: 5.52 Total: -21.06 kcal Atomic # 7 Polarization: -99.04 SS G_CDS: -8.16 Total: -107.20 kcal Atomic # 14 Polarization: 51.00 SS G_CDS: 2.05 Total: 53.05 kcal Total: -69.75 0.51 -69.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000766938077.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.487 kcal (2) G-P(sol) polarization free energy of solvation -69.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.233 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds