Wall clock time and date at job start Sun Mar 29 2020 22:17:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31561 * 1 3 3 Si 1.86797 * 120.00309 * 2 1 4 4 H 1.48494 * 109.47230 * 240.00354 * 3 2 1 5 5 H 1.48506 * 109.47073 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47099 * 119.99967 * 3 2 1 7 7 C 1.38658 * 119.99768 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99827 * 179.97438 * 7 2 1 9 9 O 1.34828 * 119.99961 * 0.02562 * 7 2 1 10 10 C 1.35751 * 117.00270 * 185.03453 * 9 7 2 11 11 C 1.38907 * 120.06573 * 354.17581 * 10 9 7 12 12 C 1.38080 * 119.92607 * 179.67507 * 11 10 9 13 13 C 1.38314 * 120.07342 * 0.61997 * 12 11 10 14 14 C 1.38284 * 120.13758 * 359.67251 * 13 12 11 15 15 C 1.50702 * 119.96617 * 180.02562 * 14 13 12 16 16 C 1.50702 * 109.47204 * 269.97892 * 15 14 13 17 17 O 1.21282 * 119.99807 * 359.97438 * 16 15 14 18 18 N 1.34768 * 119.99934 * 179.97438 * 16 15 14 19 19 O 1.41606 * 120.00010 * 179.97438 * 18 16 15 20 20 C 1.38123 * 120.06539 * 0.02562 * 14 13 12 21 21 H 0.97000 * 119.99462 * 0.02562 * 1 2 3 22 22 H 1.08002 * 120.03226 * 359.97438 * 11 10 9 23 23 H 1.08004 * 119.95736 * 180.31623 * 12 11 10 24 24 H 1.08001 * 119.93634 * 179.69935 * 13 12 11 25 25 H 1.08997 * 109.47004 * 29.98389 * 15 14 13 26 26 H 1.08999 * 109.46889 * 149.97913 * 15 14 13 27 27 H 0.97004 * 120.00079 * 0.02562 * 18 16 15 28 28 H 0.96701 * 114.00084 * 180.02562 * 19 18 16 29 29 H 1.08006 * 120.03219 * 180.02562 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 3.1033 1.6963 -1.2125 5 1 1.2847 2.7465 -0.0006 6 1 3.1034 1.6963 1.2125 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2009 -0.0010 9 8 1.3347 -2.3685 -0.0016 10 6 2.0698 -3.5048 0.1041 11 6 3.4573 -3.4403 0.0852 12 6 4.2023 -4.5972 0.1996 13 6 3.5684 -5.8207 0.3201 14 6 2.1873 -5.8888 0.3331 15 6 1.5008 -7.2238 0.4651 16 6 1.2648 -7.8050 -0.9052 17 8 1.6189 -7.1950 -1.8918 18 7 0.6604 -9.0027 -1.0343 19 8 0.4383 -9.5485 -2.3218 20 6 1.4365 -4.7345 0.2253 21 1 -0.4849 0.8401 -0.0004 22 1 3.9527 -2.4857 -0.0140 23 1 5.2811 -4.5471 0.1902 24 1 4.1533 -6.7247 0.4045 25 1 2.1300 -7.9004 1.0433 26 1 0.5456 -7.0924 0.9734 27 1 0.3769 -9.4904 -0.2452 28 1 -0.0013 -10.4099 -2.3134 29 1 0.3579 -4.7883 0.2359 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000782169487.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:58 Heat of formation + Delta-G solvation = -34.834029 kcal Electronic energy + Delta-G solvation = -15906.080536 eV Core-core repulsion = 12990.419961 eV Total energy + Delta-G solvation = -2915.660575 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 237.083 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.64641 -38.68885 -36.68768 -36.07336 -32.61961 -32.19063 -31.19785 -29.13492 -26.88211 -25.18457 -21.77116 -21.38220 -20.35659 -19.09124 -17.54452 -16.87586 -16.77000 -15.48450 -14.96578 -14.72144 -14.36753 -14.33678 -13.58823 -13.49183 -13.27428 -12.87839 -12.52448 -12.37943 -11.79757 -11.51486 -11.23055 -10.81039 -10.76130 -10.59554 -10.42812 -9.85788 -9.30013 -9.04889 -8.78694 -8.05101 -7.17885 -6.39312 -3.98352 1.81158 2.33363 2.46639 2.75212 3.16943 3.18167 3.20647 4.01189 4.50784 4.81889 4.98730 5.07280 5.13015 5.21261 5.46595 5.64543 5.77113 5.96572 6.20877 6.37462 6.67814 6.92822 6.96299 7.11169 7.28191 7.32769 7.40778 7.48159 7.86112 8.05578 8.37064 9.06254 9.77087 10.78910 Molecular weight = 237.08amu Principal moments of inertia in cm(-1) A = 0.042081 B = 0.005211 C = 0.004866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.220459 B = 5371.619546 C = 5753.401833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.039 3.961 3 Si 0.941 3.059 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.270 1.270 7 C -0.391 4.391 8 H 0.091 0.909 9 O -0.179 6.179 10 C 0.154 3.846 11 C -0.228 4.228 12 C -0.075 4.075 13 C -0.194 4.194 14 C -0.038 4.038 15 C -0.077 4.077 16 C 0.522 3.478 17 O -0.499 6.499 18 N -0.605 5.605 19 O -0.323 6.323 20 C -0.172 4.172 21 H 0.270 0.730 22 H 0.127 0.873 23 H 0.108 0.892 24 H 0.104 0.896 25 H 0.103 0.897 26 H 0.105 0.895 27 H 0.405 0.595 28 H 0.382 0.618 29 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.080 -15.784 3.327 16.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.165 4.165 3 Si 0.766 3.234 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.195 1.195 7 C -0.468 4.468 8 H 0.108 0.892 9 O -0.083 6.083 10 C 0.101 3.899 11 C -0.247 4.247 12 C -0.093 4.093 13 C -0.213 4.213 14 C -0.039 4.039 15 C -0.118 4.118 16 C 0.308 3.692 17 O -0.370 6.370 18 N -0.305 5.305 19 O -0.217 6.217 20 C -0.192 4.192 21 H 0.080 0.920 22 H 0.145 0.855 23 H 0.126 0.874 24 H 0.122 0.878 25 H 0.121 0.879 26 H 0.123 0.877 27 H 0.244 0.756 28 H 0.225 0.775 29 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 2.209 -14.507 2.385 14.867 hybrid contribution -0.010 -0.189 0.260 0.321 sum 2.199 -14.696 2.645 15.093 Atomic orbital electron populations 1.70036 1.05941 1.27672 1.46314 1.25277 0.95838 0.98779 0.96636 0.85785 0.78681 0.79824 0.79153 1.19527 1.20318 1.19532 1.21274 0.91764 0.80860 1.52864 0.89153 1.83976 1.34217 1.11360 1.78711 1.19266 0.90258 0.87970 0.92451 1.21200 0.93835 0.99049 1.10621 1.20682 0.98442 0.92285 0.97933 1.20361 0.93220 0.97015 1.10754 1.18588 0.93279 0.91430 1.00599 1.20483 1.03074 0.95919 0.92284 1.21033 0.77067 0.78446 0.92606 1.90794 1.48234 1.58433 1.39516 1.47178 1.64659 1.20691 0.97951 1.89309 1.84336 1.39776 1.08259 1.19956 0.99140 0.89983 1.10083 0.92043 0.85544 0.87363 0.87785 0.87852 0.87697 0.75639 0.77467 0.86675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.88 13.67 55.48 0.76 -25.13 15 2 C 0.04 1.09 5.49 -17.51 -0.10 0.99 15 3 Si 0.94 20.97 29.55 -169.99 -5.02 15.95 15 4 H -0.27 -5.86 7.11 56.52 0.40 -5.46 15 5 H -0.28 -6.05 7.11 56.52 0.40 -5.64 15 6 H -0.27 -5.80 7.11 56.52 0.40 -5.40 15 7 C -0.39 -11.24 9.49 30.89 0.29 -10.95 15 8 H 0.09 2.40 5.21 -52.49 -0.27 2.12 15 9 O -0.18 -5.28 9.76 0.05 0.00 -5.28 15 10 C 0.15 3.89 6.65 -39.11 -0.26 3.63 15 11 C -0.23 -5.19 9.17 -39.39 -0.36 -5.55 15 12 C -0.08 -1.46 10.04 -39.61 -0.40 -1.85 15 13 C -0.19 -3.53 9.70 -39.54 -0.38 -3.91 15 14 C -0.04 -0.70 4.37 -104.65 -0.46 -1.16 15 15 C -0.08 -0.99 5.83 -29.03 -0.17 -1.16 15 16 C 0.52 8.01 7.97 -10.99 -0.09 7.93 15 17 O -0.50 -10.80 16.44 -12.64 -0.21 -11.01 15 18 N -0.60 -6.51 6.95 31.22 0.22 -6.29 15 19 O -0.32 -3.66 14.69 -29.66 -0.44 -4.10 15 20 C -0.17 -3.80 9.65 -39.40 -0.38 -4.18 15 21 H 0.27 7.41 8.31 -40.82 -0.34 7.07 15 22 H 0.13 2.85 5.64 -52.49 -0.30 2.55 15 23 H 0.11 1.75 8.06 -52.48 -0.42 1.33 15 24 H 0.10 1.57 8.06 -52.49 -0.42 1.15 15 25 H 0.10 0.93 8.08 -51.93 -0.42 0.51 15 26 H 0.10 1.07 8.08 -51.93 -0.42 0.65 15 27 H 0.41 2.23 8.83 -40.82 -0.36 1.87 15 28 H 0.38 1.59 9.28 45.56 0.42 2.01 15 29 H 0.12 2.45 8.06 -52.48 -0.42 2.02 15 LS Contribution 268.35 15.07 4.04 4.04 Total: -1.00 -38.54 268.35 -4.70 -43.24 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: -1.75 Total: 4.81 kcal Atomic # 6 Polarization: -13.92 SS G_CDS: -2.30 Total: -16.22 kcal Atomic # 7 Polarization: -32.40 SS G_CDS: 0.98 Total: -31.42 kcal Atomic # 8 Polarization: -19.75 SS G_CDS: -0.64 Total: -20.39 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -38.54 -4.70 -43.24 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782169487.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.402 kcal (2) G-P(sol) polarization free energy of solvation -38.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds