Wall clock time and date at job start Sun Mar 29 2020 22:17:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31561 * 1 3 3 Si 1.86797 * 120.00309 * 2 1 4 4 H 1.48494 * 109.47230 * 240.00354 * 3 2 1 5 5 H 1.48506 * 109.47073 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47099 * 119.99967 * 3 2 1 7 7 C 1.38658 * 119.99768 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99827 * 179.97438 * 7 2 1 9 9 O 1.34828 * 119.99961 * 0.02562 * 7 2 1 10 10 C 1.35751 * 117.00270 * 185.03453 * 9 7 2 11 11 C 1.38907 * 120.06573 * 354.17581 * 10 9 7 12 12 C 1.38080 * 119.92607 * 179.67507 * 11 10 9 13 13 C 1.38314 * 120.07342 * 0.61997 * 12 11 10 14 14 C 1.38284 * 120.13758 * 359.67251 * 13 12 11 15 15 C 1.50702 * 119.96617 * 180.02562 * 14 13 12 16 16 C 1.50702 * 109.47204 * 269.97892 * 15 14 13 17 17 O 1.21282 * 119.99807 * 359.97438 * 16 15 14 18 18 N 1.34768 * 119.99934 * 179.97438 * 16 15 14 19 19 O 1.41606 * 120.00010 * 179.97438 * 18 16 15 20 20 C 1.38123 * 120.06539 * 0.02562 * 14 13 12 21 21 H 0.97000 * 119.99462 * 0.02562 * 1 2 3 22 22 H 1.08002 * 120.03226 * 359.97438 * 11 10 9 23 23 H 1.08004 * 119.95736 * 180.31623 * 12 11 10 24 24 H 1.08001 * 119.93634 * 179.69935 * 13 12 11 25 25 H 1.08997 * 109.47004 * 29.98389 * 15 14 13 26 26 H 1.08999 * 109.46889 * 149.97913 * 15 14 13 27 27 H 0.97004 * 120.00079 * 0.02562 * 18 16 15 28 28 H 0.96701 * 114.00084 * 180.02562 * 19 18 16 29 29 H 1.08006 * 120.03219 * 180.02562 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 3.1033 1.6963 -1.2125 5 1 1.2847 2.7465 -0.0006 6 1 3.1034 1.6963 1.2125 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2009 -0.0010 9 8 1.3347 -2.3685 -0.0016 10 6 2.0698 -3.5048 0.1041 11 6 3.4573 -3.4403 0.0852 12 6 4.2023 -4.5972 0.1996 13 6 3.5684 -5.8207 0.3201 14 6 2.1873 -5.8888 0.3331 15 6 1.5008 -7.2238 0.4651 16 6 1.2648 -7.8050 -0.9052 17 8 1.6189 -7.1950 -1.8918 18 7 0.6604 -9.0027 -1.0343 19 8 0.4383 -9.5485 -2.3218 20 6 1.4365 -4.7345 0.2253 21 1 -0.4849 0.8401 -0.0004 22 1 3.9527 -2.4857 -0.0140 23 1 5.2811 -4.5471 0.1902 24 1 4.1533 -6.7247 0.4045 25 1 2.1300 -7.9004 1.0433 26 1 0.5456 -7.0924 0.9734 27 1 0.3769 -9.4904 -0.2452 28 1 -0.0013 -10.4099 -2.3134 29 1 0.3579 -4.7883 0.2359 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000782169487.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:58 Heat of formation + Delta-G solvation = -66.011832 kcal Electronic energy + Delta-G solvation = -15907.432507 eV Core-core repulsion = 12990.419961 eV Total energy + Delta-G solvation = -2917.012546 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 237.083 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.05118 -40.25594 -38.24651 -37.23729 -34.34718 -33.79060 -32.43113 -30.83027 -28.27867 -27.19971 -23.34211 -22.95011 -21.65608 -20.14491 -19.35679 -18.66657 -17.90011 -16.84337 -16.62013 -16.14541 -15.97054 -15.81772 -15.41138 -14.98251 -14.40835 -14.27812 -14.00460 -13.79472 -13.54564 -12.95427 -12.78436 -12.46737 -12.40430 -12.21335 -12.12453 -11.20417 -11.14445 -10.78743 -10.02174 -9.65126 -8.97316 -8.46220 -6.14861 0.44716 0.76334 1.26013 1.34412 1.46389 1.51156 1.62256 2.18648 2.83382 3.16575 3.43500 3.71570 3.99513 4.11961 4.33072 4.43719 4.44497 4.59121 4.64546 4.75416 5.06896 5.13513 5.31463 5.65386 5.73172 5.75438 6.03445 6.09527 6.25964 6.57435 6.98166 7.44902 7.79876 8.77214 Molecular weight = 237.08amu Principal moments of inertia in cm(-1) A = 0.042081 B = 0.005211 C = 0.004866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.220459 B = 5371.619546 C = 5753.401833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.024 4.024 3 Si 1.020 2.980 4 H -0.260 1.260 5 H -0.270 1.270 6 H -0.255 1.255 7 C -0.415 4.415 8 H 0.100 0.900 9 O -0.235 6.235 10 C 0.109 3.891 11 C -0.245 4.245 12 C -0.076 4.076 13 C -0.178 4.178 14 C -0.032 4.032 15 C -0.072 4.072 16 C 0.519 3.481 17 O -0.577 6.577 18 N -0.580 5.580 19 O -0.349 6.349 20 C -0.191 4.191 21 H 0.273 0.727 22 H 0.118 0.882 23 H 0.146 0.854 24 H 0.151 0.849 25 H 0.158 0.842 26 H 0.134 0.866 27 H 0.433 0.567 28 H 0.411 0.589 29 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.831 -18.472 4.405 19.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.221 4.221 3 Si 0.839 3.161 4 H -0.184 1.184 5 H -0.195 1.195 6 H -0.179 1.179 7 C -0.491 4.491 8 H 0.118 0.882 9 O -0.142 6.142 10 C 0.059 3.941 11 C -0.264 4.264 12 C -0.094 4.094 13 C -0.196 4.196 14 C -0.033 4.033 15 C -0.111 4.111 16 C 0.308 3.692 17 O -0.454 6.454 18 N -0.280 5.280 19 O -0.249 6.249 20 C -0.211 4.211 21 H 0.082 0.918 22 H 0.136 0.864 23 H 0.164 0.836 24 H 0.169 0.831 25 H 0.175 0.825 26 H 0.152 0.848 27 H 0.277 0.723 28 H 0.260 0.740 29 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 3.947 -17.337 3.516 18.124 hybrid contribution -0.506 0.196 -0.061 0.546 sum 3.442 -17.140 3.455 17.821 Atomic orbital electron populations 1.70188 1.08041 1.28827 1.49023 1.26620 0.96895 1.02763 0.95866 0.84636 0.77384 0.74170 0.79921 1.18419 1.19476 1.17892 1.21794 0.92514 0.81525 1.53315 0.88231 1.83933 1.35915 1.12569 1.81777 1.19896 0.91705 0.87974 0.94487 1.21329 0.93154 1.00344 1.11604 1.21153 1.00304 0.91510 0.96383 1.21032 0.93522 0.98178 1.06910 1.19173 0.93830 0.92774 0.97523 1.20614 1.05229 0.93509 0.91789 1.21379 0.76441 0.78969 0.92461 1.90781 1.51940 1.60799 1.41853 1.46748 1.62532 1.19701 0.99044 1.89280 1.84898 1.42123 1.08559 1.20271 0.99470 0.90497 1.10841 0.91848 0.86438 0.83602 0.83098 0.82484 0.84799 0.72260 0.73995 0.87271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -58.39 13.67 21.61 0.30 -58.10 15 2 C -0.02 -1.43 5.49 84.83 0.47 -0.97 15 3 Si 1.02 44.28 29.55 68.60 2.03 46.30 15 4 H -0.26 -10.69 7.11 99.48 0.71 -9.98 15 5 H -0.27 -11.21 7.11 99.48 0.71 -10.50 15 6 H -0.25 -10.28 7.11 99.48 0.71 -9.57 15 7 C -0.42 -25.28 9.49 67.92 0.64 -24.63 15 8 H 0.10 5.57 5.21 -2.91 -0.02 5.56 15 9 O -0.23 -14.89 9.76 -22.74 -0.22 -15.11 15 10 C 0.11 5.80 6.65 22.58 0.15 5.95 15 11 C -0.25 -11.39 9.17 22.39 0.21 -11.18 15 12 C -0.08 -2.76 10.04 22.25 0.22 -2.53 15 13 C -0.18 -5.77 9.70 22.30 0.22 -5.56 15 14 C -0.03 -1.11 4.37 -19.88 -0.09 -1.20 15 15 C -0.07 -1.52 5.83 29.10 0.17 -1.35 15 16 C 0.52 14.43 7.97 87.66 0.70 15.12 15 17 O -0.58 -24.48 16.44 14.36 0.24 -24.25 15 18 N -0.58 -10.33 6.95 -173.54 -1.21 -11.54 15 19 O -0.35 -6.96 14.69 -21.40 -0.31 -7.27 15 20 C -0.19 -8.63 9.65 22.39 0.22 -8.42 15 21 H 0.27 15.78 8.31 -92.71 -0.77 15.01 15 22 H 0.12 5.51 5.64 -2.91 -0.02 5.50 15 23 H 0.15 4.16 8.06 -2.91 -0.02 4.14 15 24 H 0.15 3.56 8.06 -2.91 -0.02 3.53 15 25 H 0.16 1.70 8.08 -2.39 -0.02 1.68 15 26 H 0.13 2.13 8.08 -2.39 -0.02 2.11 15 27 H 0.43 2.62 8.83 -92.71 -0.82 1.80 15 28 H 0.41 2.06 9.28 -74.06 -0.69 1.37 15 29 H 0.11 4.87 8.06 -2.91 -0.02 4.85 15 Total: -1.00 -92.67 268.35 3.42 -89.25 By element: Atomic # 1 Polarization: 15.78 SS G_CDS: -0.30 Total: 15.49 kcal Atomic # 6 Polarization: -37.67 SS G_CDS: 2.90 Total: -34.77 kcal Atomic # 7 Polarization: -68.73 SS G_CDS: -0.91 Total: -69.64 kcal Atomic # 8 Polarization: -46.33 SS G_CDS: -0.30 Total: -46.63 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.30 kcal Total: -92.67 3.42 -89.25 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782169487.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.234 kcal (2) G-P(sol) polarization free energy of solvation -92.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds