Wall clock time and date at job start Sun Mar 29 2020 22:17:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86795 * 119.99959 * 2 1 4 4 H 1.48498 * 109.47517 * 239.99948 * 3 2 1 5 5 H 1.48505 * 109.47332 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46989 * 120.00101 * 3 2 1 7 7 C 1.38663 * 120.00220 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99731 * 179.97438 * 7 2 1 9 9 O 1.34828 * 119.99751 * 359.97438 * 7 2 1 10 10 C 1.35750 * 117.00075 * 174.94575 * 9 7 2 11 11 C 1.38874 * 120.06878 * 185.26035 * 10 9 7 12 12 C 1.38106 * 119.92542 * 179.72264 * 11 10 9 13 13 C 1.38304 * 120.07204 * 0.53100 * 12 11 10 14 14 C 1.50695 * 119.93307 * 179.74764 * 13 12 11 15 15 C 1.50705 * 109.46992 * 270.02253 * 14 13 12 16 16 O 1.21287 * 119.99956 * 359.97438 * 15 14 13 17 17 N 1.34775 * 120.00246 * 180.02562 * 15 14 13 18 18 O 1.41593 * 120.00091 * 180.02562 * 17 15 14 19 19 C 1.38299 * 120.13445 * 359.76820 * 13 12 11 20 20 C 1.38101 * 120.07425 * 359.95492 * 19 13 12 21 21 H 0.96996 * 120.00178 * 359.97438 * 1 2 3 22 22 H 1.07996 * 120.03745 * 0.02562 * 11 10 9 23 23 H 1.07997 * 119.96326 * 180.27708 * 12 11 10 24 24 H 1.08998 * 109.47086 * 30.01537 * 14 13 12 25 25 H 1.08996 * 109.47192 * 150.02113 * 14 13 12 26 26 H 0.97005 * 119.99604 * 359.97438 * 17 15 14 27 27 H 0.96706 * 114.00070 * 180.02562 * 18 17 15 28 28 H 1.07999 * 119.96503 * 179.97438 * 19 13 12 29 29 H 1.07992 * 120.03608 * 180.02562 * 20 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 3.1033 1.6965 -1.2124 5 1 1.2845 2.7465 0.0006 6 1 3.1033 1.6963 1.2125 7 6 2.0089 -1.2008 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3348 -2.3685 -0.0005 10 6 2.0700 -3.5046 -0.1076 11 6 1.4365 -4.7349 -0.2242 12 6 2.1874 -5.8884 -0.3387 13 6 3.5687 -5.8202 -0.3264 14 6 4.3849 -7.0813 -0.4459 15 6 4.6507 -7.6397 0.9284 16 8 4.2201 -7.0694 1.9084 17 7 5.3677 -8.7723 1.0686 18 8 5.6170 -9.2972 2.3598 19 6 4.2024 -4.5970 -0.2043 20 6 3.4573 -3.4394 -0.0951 21 1 -0.4850 0.8400 0.0004 22 1 0.3579 -4.7892 -0.2301 23 1 1.6954 -6.8451 -0.4339 24 1 3.8358 -7.8149 -1.0361 25 1 5.3320 -6.8560 -0.9360 26 1 5.7124 -9.2282 0.2848 27 1 6.1395 -10.1109 2.3595 28 1 5.2812 -4.5470 -0.1945 29 1 3.9527 -2.4846 -0.0001 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000782172139.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:29 Heat of formation + Delta-G solvation = -35.506336 kcal Electronic energy + Delta-G solvation = -15817.814027 eV Core-core repulsion = 12902.124299 eV Total energy + Delta-G solvation = -2915.689728 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 237.083 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.62738 -38.70933 -36.73010 -36.07710 -32.60386 -32.10570 -30.68700 -30.11707 -26.51211 -25.05313 -21.95150 -21.37940 -20.24685 -19.01269 -17.95112 -16.90892 -16.78369 -15.39922 -14.90438 -14.51837 -14.44157 -14.22417 -13.59043 -13.47861 -13.28803 -12.96191 -12.66847 -12.37991 -11.81886 -11.50383 -11.23821 -10.84767 -10.74565 -10.62219 -10.41175 -9.83825 -9.30180 -9.06436 -8.79349 -8.12022 -7.15024 -6.41772 -4.00252 1.86811 2.28692 2.46327 2.75089 3.15872 3.17035 3.19623 3.99859 4.51023 4.87241 4.98319 5.12830 5.21135 5.24621 5.33438 5.59977 5.74839 5.87023 6.24806 6.44488 6.72053 6.91146 6.96028 7.07937 7.25457 7.33701 7.38746 7.48020 7.86486 8.03406 8.37193 9.03668 9.74130 10.76177 Molecular weight = 237.08amu Principal moments of inertia in cm(-1) A = 0.051365 B = 0.004772 C = 0.004601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.985100 B = 5866.070897 C = 6083.758314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.039 3.961 3 Si 0.942 3.058 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.270 1.270 7 C -0.392 4.392 8 H 0.092 0.908 9 O -0.177 6.177 10 C 0.159 3.841 11 C -0.192 4.192 12 C -0.057 4.057 13 C -0.177 4.177 14 C -0.063 4.063 15 C 0.516 3.484 16 O -0.501 6.501 17 N -0.606 5.606 18 O -0.325 6.325 19 C -0.053 4.053 20 C -0.233 4.233 21 H 0.270 0.730 22 H 0.118 0.882 23 H 0.110 0.890 24 H 0.097 0.903 25 H 0.097 0.903 26 H 0.404 0.596 27 H 0.381 0.619 28 H 0.105 0.895 29 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.979 -15.026 -3.321 18.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C -0.165 4.165 3 Si 0.766 3.234 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.195 1.195 7 C -0.468 4.468 8 H 0.109 0.891 9 O -0.080 6.080 10 C 0.105 3.895 11 C -0.211 4.211 12 C -0.075 4.075 13 C -0.178 4.178 14 C -0.103 4.103 15 C 0.303 3.697 16 O -0.372 6.372 17 N -0.306 5.306 18 O -0.219 6.219 19 C -0.072 4.072 20 C -0.253 4.253 21 H 0.080 0.920 22 H 0.136 0.864 23 H 0.128 0.872 24 H 0.116 0.884 25 H 0.115 0.885 26 H 0.243 0.757 27 H 0.224 0.776 28 H 0.123 0.877 29 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 9.839 -13.805 -2.389 17.120 hybrid contribution 1.173 -0.152 -0.229 1.205 sum 11.012 -13.957 -2.618 17.970 Atomic orbital electron populations 1.70030 1.05958 1.27764 1.45997 1.25296 0.95849 0.98840 0.96558 0.85775 0.78687 0.79750 0.79177 1.19509 1.20290 1.19499 1.21294 0.91807 0.80840 1.52855 0.89081 1.83975 1.34375 1.11478 1.78139 1.19402 0.90299 0.88028 0.91791 1.20155 0.99545 0.90304 1.11141 1.20413 0.92690 0.96716 0.97692 1.18562 0.93214 0.92259 1.13811 1.20308 1.01683 0.96905 0.91428 1.21413 0.77116 0.78093 0.93030 1.90780 1.48539 1.57658 1.40196 1.47306 1.58520 1.26967 0.97853 1.89308 1.78136 1.45972 1.08472 1.20519 0.98128 0.91795 0.96732 1.21105 0.93800 0.98845 1.11515 0.91980 0.86437 0.87229 0.88439 0.88479 0.75747 0.77552 0.87679 0.85497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.69 13.67 55.48 0.76 -24.93 15 2 C 0.04 1.09 5.49 -17.51 -0.10 0.99 15 3 Si 0.94 20.85 29.55 -169.99 -5.02 15.83 15 4 H -0.27 -5.76 7.11 56.52 0.40 -5.36 15 5 H -0.28 -6.00 7.11 56.52 0.40 -5.60 15 6 H -0.27 -5.82 7.11 56.52 0.40 -5.42 15 7 C -0.39 -11.19 9.49 30.89 0.29 -10.90 15 8 H 0.09 2.40 5.20 -52.49 -0.27 2.13 15 9 O -0.18 -5.18 9.76 0.05 0.00 -5.18 15 10 C 0.16 3.99 6.65 -39.11 -0.26 3.73 15 11 C -0.19 -4.24 9.99 -39.39 -0.39 -4.64 15 12 C -0.06 -1.06 9.69 -39.61 -0.38 -1.44 15 13 C -0.18 -3.09 4.38 -104.58 -0.46 -3.55 15 14 C -0.06 -0.76 5.83 -29.04 -0.17 -0.92 15 15 C 0.52 7.57 7.97 -10.98 -0.09 7.48 15 16 O -0.50 -10.50 16.44 -12.64 -0.21 -10.71 15 17 N -0.61 -6.20 6.95 31.22 0.22 -5.98 15 18 O -0.33 -3.55 14.69 -29.66 -0.44 -3.98 15 19 C -0.05 -1.02 9.69 -39.61 -0.38 -1.40 15 20 C -0.23 -5.28 9.17 -39.39 -0.36 -5.64 15 21 H 0.27 7.39 8.31 -40.82 -0.34 7.05 15 22 H 0.12 2.49 8.06 -52.49 -0.42 2.07 15 23 H 0.11 1.69 8.06 -52.49 -0.42 1.26 15 24 H 0.10 0.86 8.08 -51.93 -0.42 0.44 15 25 H 0.10 0.88 8.08 -51.93 -0.42 0.46 15 26 H 0.40 2.03 8.83 -40.82 -0.36 1.67 15 27 H 0.38 1.44 9.28 45.56 0.42 1.87 15 28 H 0.11 1.70 8.06 -52.49 -0.42 1.27 15 29 H 0.13 2.85 5.64 -52.49 -0.30 2.56 15 LS Contribution 268.34 15.07 4.04 4.04 Total: -1.00 -38.10 268.34 -4.70 -42.80 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: -1.75 Total: 4.40 kcal Atomic # 6 Polarization: -13.99 SS G_CDS: -2.30 Total: -16.29 kcal Atomic # 7 Polarization: -31.89 SS G_CDS: 0.98 Total: -30.92 kcal Atomic # 8 Polarization: -19.22 SS G_CDS: -0.64 Total: -19.87 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -38.10 -4.70 -42.80 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782172139.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.291 kcal (2) G-P(sol) polarization free energy of solvation -38.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds