Wall clock time and date at job start Sun Mar 29 2020 22:17:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86795 * 119.99959 * 2 1 4 4 H 1.48498 * 109.47517 * 239.99948 * 3 2 1 5 5 H 1.48505 * 109.47332 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46989 * 120.00101 * 3 2 1 7 7 C 1.38663 * 120.00220 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99731 * 179.97438 * 7 2 1 9 9 O 1.34828 * 119.99751 * 359.97438 * 7 2 1 10 10 C 1.35750 * 117.00075 * 174.94575 * 9 7 2 11 11 C 1.38874 * 120.06878 * 185.26035 * 10 9 7 12 12 C 1.38106 * 119.92542 * 179.72264 * 11 10 9 13 13 C 1.38304 * 120.07204 * 0.53100 * 12 11 10 14 14 C 1.50695 * 119.93307 * 179.74764 * 13 12 11 15 15 C 1.50705 * 109.46992 * 270.02253 * 14 13 12 16 16 O 1.21287 * 119.99956 * 359.97438 * 15 14 13 17 17 N 1.34775 * 120.00246 * 180.02562 * 15 14 13 18 18 O 1.41593 * 120.00091 * 180.02562 * 17 15 14 19 19 C 1.38299 * 120.13445 * 359.76820 * 13 12 11 20 20 C 1.38101 * 120.07425 * 359.95492 * 19 13 12 21 21 H 0.96996 * 120.00178 * 359.97438 * 1 2 3 22 22 H 1.07996 * 120.03745 * 0.02562 * 11 10 9 23 23 H 1.07997 * 119.96326 * 180.27708 * 12 11 10 24 24 H 1.08998 * 109.47086 * 30.01537 * 14 13 12 25 25 H 1.08996 * 109.47192 * 150.02113 * 14 13 12 26 26 H 0.97005 * 119.99604 * 359.97438 * 17 15 14 27 27 H 0.96706 * 114.00070 * 180.02562 * 18 17 15 28 28 H 1.07999 * 119.96503 * 179.97438 * 19 13 12 29 29 H 1.07992 * 120.03608 * 180.02562 * 20 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 3.1033 1.6965 -1.2124 5 1 1.2845 2.7465 0.0006 6 1 3.1033 1.6963 1.2125 7 6 2.0089 -1.2008 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3348 -2.3685 -0.0005 10 6 2.0700 -3.5046 -0.1076 11 6 1.4365 -4.7349 -0.2242 12 6 2.1874 -5.8884 -0.3387 13 6 3.5687 -5.8202 -0.3264 14 6 4.3849 -7.0813 -0.4459 15 6 4.6507 -7.6397 0.9284 16 8 4.2201 -7.0694 1.9084 17 7 5.3677 -8.7723 1.0686 18 8 5.6170 -9.2972 2.3598 19 6 4.2024 -4.5970 -0.2043 20 6 3.4573 -3.4394 -0.0951 21 1 -0.4850 0.8400 0.0004 22 1 0.3579 -4.7892 -0.2301 23 1 1.6954 -6.8451 -0.4339 24 1 3.8358 -7.8149 -1.0361 25 1 5.3320 -6.8560 -0.9360 26 1 5.7124 -9.2282 0.2848 27 1 6.1395 -10.1109 2.3595 28 1 5.2812 -4.5470 -0.1945 29 1 3.9527 -2.4846 -0.0001 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000782172139.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:28 Heat of formation + Delta-G solvation = -66.332317 kcal Electronic energy + Delta-G solvation = -15819.150742 eV Core-core repulsion = 12902.124299 eV Total energy + Delta-G solvation = -2917.026443 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 237.083 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.00930 -40.24033 -38.25800 -37.18947 -34.40465 -33.47401 -31.99215 -31.74220 -28.08456 -26.89243 -23.63096 -22.79237 -21.47595 -19.97102 -19.78421 -18.79841 -17.83788 -16.66692 -16.44745 -16.08684 -15.94559 -15.63800 -15.40344 -15.02925 -14.42994 -14.26180 -14.17260 -13.73466 -13.53954 -12.95660 -12.76246 -12.45798 -12.30161 -12.27289 -12.12956 -11.17356 -11.07847 -10.76626 -9.97843 -9.75009 -8.91099 -8.46700 -6.15053 0.59820 0.63128 1.29973 1.34538 1.47009 1.51354 1.68787 2.18573 2.82924 3.16794 3.52475 3.77822 4.05898 4.07199 4.21259 4.48601 4.49863 4.61249 4.71360 4.81770 5.09717 5.15279 5.31525 5.57013 5.72610 5.77274 6.03402 6.14020 6.26739 6.62604 6.97524 7.50225 7.78894 8.76496 Molecular weight = 237.08amu Principal moments of inertia in cm(-1) A = 0.051365 B = 0.004772 C = 0.004601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.985100 B = 5866.070897 C = 6083.758314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.025 4.025 3 Si 1.021 2.979 4 H -0.255 1.255 5 H -0.270 1.270 6 H -0.260 1.260 7 C -0.416 4.416 8 H 0.101 0.899 9 O -0.233 6.233 10 C 0.113 3.887 11 C -0.209 4.209 12 C -0.056 4.056 13 C -0.153 4.153 14 C -0.058 4.058 15 C 0.515 3.485 16 O -0.579 6.579 17 N -0.582 5.582 18 O -0.352 6.352 19 C -0.058 4.058 20 C -0.247 4.247 21 H 0.273 0.727 22 H 0.112 0.888 23 H 0.150 0.850 24 H 0.144 0.856 25 H 0.141 0.859 26 H 0.433 0.567 27 H 0.410 0.590 28 H 0.142 0.858 29 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.047 -17.691 -4.417 23.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.222 4.222 3 Si 0.839 3.161 4 H -0.179 1.179 5 H -0.195 1.195 6 H -0.184 1.184 7 C -0.492 4.492 8 H 0.118 0.882 9 O -0.140 6.140 10 C 0.063 3.937 11 C -0.229 4.229 12 C -0.073 4.073 13 C -0.154 4.154 14 C -0.098 4.098 15 C 0.304 3.696 16 O -0.456 6.456 17 N -0.282 5.282 18 O -0.251 6.251 19 C -0.076 4.076 20 C -0.266 4.266 21 H 0.082 0.918 22 H 0.130 0.870 23 H 0.168 0.832 24 H 0.162 0.838 25 H 0.159 0.841 26 H 0.276 0.724 27 H 0.259 0.741 28 H 0.160 0.840 29 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 12.993 -16.609 -3.538 21.382 hybrid contribution 0.405 0.189 0.097 0.457 sum 13.398 -16.419 -3.441 21.470 Atomic orbital electron populations 1.70183 1.08043 1.28870 1.48855 1.26636 0.96906 1.02810 0.95834 0.84628 0.77378 0.74131 0.79925 1.17866 1.19480 1.18426 1.21800 0.92527 0.81503 1.53341 0.88189 1.83936 1.35992 1.12631 1.81454 1.19973 0.91703 0.87984 0.94027 1.20460 0.99963 0.90774 1.11661 1.20931 0.93548 0.96920 0.95940 1.19238 0.93388 0.94286 1.08482 1.20452 1.03512 0.94896 0.90919 1.21703 0.76575 0.78483 0.92865 1.90780 1.52020 1.60226 1.42552 1.46859 1.56629 1.25847 0.98875 1.89278 1.78997 1.48032 1.08822 1.20986 0.99904 0.91174 0.95521 1.21248 0.93123 1.00180 1.12073 0.91824 0.86964 0.83213 0.83841 0.84082 0.72352 0.74109 0.84038 0.86421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -58.17 13.67 21.62 0.30 -57.88 15 2 C -0.02 -1.44 5.49 84.84 0.47 -0.98 15 3 Si 1.02 44.12 29.55 68.60 2.03 46.15 15 4 H -0.25 -10.22 7.11 99.48 0.71 -9.51 15 5 H -0.27 -11.17 7.11 99.48 0.71 -10.46 15 6 H -0.26 -10.65 7.11 99.48 0.71 -9.95 15 7 C -0.42 -25.19 9.49 67.92 0.64 -24.55 15 8 H 0.10 5.57 5.20 -2.91 -0.02 5.55 15 9 O -0.23 -14.73 9.76 -22.72 -0.22 -14.95 15 10 C 0.11 5.99 6.65 22.58 0.15 6.14 15 11 C -0.21 -9.48 9.99 22.39 0.22 -9.26 15 12 C -0.06 -1.94 9.69 22.25 0.22 -1.73 15 13 C -0.15 -4.78 4.38 -19.84 -0.09 -4.87 15 14 C -0.06 -1.04 5.83 29.10 0.17 -0.87 15 15 C 0.52 12.86 7.97 87.66 0.70 13.56 15 16 O -0.58 -23.07 16.44 14.35 0.24 -22.83 15 17 N -0.58 -9.04 6.95 -173.52 -1.21 -10.25 15 18 O -0.35 -6.41 14.69 -21.37 -0.31 -6.72 15 19 C -0.06 -2.08 9.69 22.25 0.22 -1.86 15 20 C -0.25 -11.41 9.17 22.39 0.21 -11.21 15 21 H 0.27 15.76 8.31 -92.71 -0.77 14.99 15 22 H 0.11 5.02 8.06 -2.91 -0.02 5.00 15 23 H 0.15 3.99 8.06 -2.91 -0.02 3.97 15 24 H 0.14 1.39 8.08 -2.39 -0.02 1.37 15 25 H 0.14 1.43 8.08 -2.39 -0.02 1.41 15 26 H 0.43 1.68 8.83 -92.70 -0.82 0.86 15 27 H 0.41 1.45 9.28 -74.05 -0.69 0.76 15 28 H 0.14 4.01 8.06 -2.91 -0.02 3.98 15 29 H 0.12 5.50 5.64 -2.91 -0.02 5.49 15 Total: -1.00 -92.07 268.34 3.42 -88.65 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: -0.30 Total: 13.46 kcal Atomic # 6 Polarization: -38.52 SS G_CDS: 2.90 Total: -35.62 kcal Atomic # 7 Polarization: -67.22 SS G_CDS: -0.91 Total: -68.13 kcal Atomic # 8 Polarization: -44.21 SS G_CDS: -0.30 Total: -44.51 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Total: -92.07 3.42 -88.65 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782172139.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.316 kcal (2) G-P(sol) polarization free energy of solvation -92.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds