Wall clock time and date at job start Sun Mar 29 2020 22:10:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31390 * 1 3 3 Si 1.86803 * 119.99729 * 2 1 4 4 H 1.48494 * 109.47388 * 270.00178 * 3 2 1 5 5 H 1.48499 * 109.47095 * 30.00886 * 3 2 1 6 6 H 1.48501 * 109.47101 * 150.00434 * 3 2 1 7 7 C 1.38853 * 120.00385 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99798 * 359.97438 * 7 2 1 9 9 O 1.34797 * 120.00208 * 179.97438 * 7 2 1 10 10 C 1.34893 * 116.99933 * 179.97438 * 9 7 2 11 11 O 1.21673 * 120.00021 * 0.02562 * 10 9 7 12 12 C 1.46140 * 120.00036 * 180.27888 * 10 9 7 13 13 C 1.35003 * 120.00247 * 179.73015 * 12 10 9 14 14 C 1.47138 * 120.00133 * 179.97438 * 13 12 10 15 15 C 1.39881 * 120.57891 * 0.02562 * 14 13 12 16 16 N 1.31612 * 120.57881 * 180.02562 * 15 14 13 17 17 C 1.31961 * 121.93482 * 359.96651 * 16 15 14 18 18 C 1.38590 * 121.10834 * 0.02562 * 17 16 15 19 19 F 1.35102 * 120.35329 * 180.02562 * 18 17 16 20 20 C 1.38530 * 119.29008 * 359.74176 * 18 17 16 21 21 H 0.97002 * 120.00114 * 359.97438 * 1 2 3 22 22 H 1.08001 * 119.99644 * 359.72258 * 12 10 9 23 23 H 1.08002 * 119.99579 * 359.97438 * 13 12 10 24 24 H 1.08000 * 119.70873 * 359.97438 * 15 14 13 25 25 H 1.07998 * 119.44304 * 180.02562 * 17 16 15 26 26 H 1.08003 * 120.87916 * 180.27899 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3139 0.0000 0.0000 3 14 2.2478 1.6178 0.0000 4 1 2.4953 2.0466 -1.4000 5 1 1.4453 2.6526 0.7002 6 1 3.5455 1.4403 0.6999 7 6 2.0082 -1.2025 -0.0005 8 1 1.4683 -2.1378 -0.0005 9 8 3.3562 -1.2024 -0.0011 10 6 3.9686 -2.4043 -0.0010 11 8 3.3060 -3.4248 -0.0010 12 6 5.4280 -2.4808 0.0046 13 6 6.0410 -3.6836 0.0101 14 6 7.5103 -3.7606 0.0152 15 6 8.2840 -2.5952 0.0149 16 7 9.5983 -2.6640 0.0189 17 6 10.2368 -3.8189 0.0240 18 6 9.5447 -5.0197 0.0249 19 9 10.2139 -6.1933 0.0306 20 6 8.1595 -5.0036 0.0257 21 1 -0.4850 0.8401 0.0004 22 1 6.0162 -1.5750 0.0042 23 1 5.4527 -4.5894 0.0108 24 1 7.7985 -1.6305 0.0105 25 1 11.3167 -3.8284 0.0277 26 1 7.5945 -5.9240 0.0308 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000785848131.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:03 Heat of formation + Delta-G solvation = -70.889915 kcal Electronic energy + Delta-G solvation = -15121.424464 eV Core-core repulsion = 12080.740084 eV Total energy + Delta-G solvation = -3040.684380 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 237.059 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -49.23778 -40.26813 -39.18212 -35.82250 -34.36571 -32.47944 -32.12252 -29.97455 -26.26968 -24.46105 -23.99490 -21.72622 -19.26596 -18.12383 -17.98430 -17.35389 -16.86092 -16.56967 -16.05602 -15.13567 -14.75006 -14.23451 -14.17108 -13.94629 -13.74818 -13.35490 -12.80382 -12.49478 -12.17347 -11.77373 -11.52041 -10.97418 -10.57921 -10.46867 -9.88161 -9.84114 -9.61207 -9.34168 -8.81746 -8.53574 -6.53029 -4.21142 0.18501 0.76002 1.87132 3.13361 3.17688 3.29830 3.41509 3.65162 3.85824 4.00875 4.13770 4.16021 4.46361 4.54963 4.59424 4.95490 5.01077 5.24301 5.51764 5.54455 5.65415 5.98986 6.27257 6.41819 6.61835 7.53766 7.59925 7.88658 8.51199 8.84495 9.54236 10.54090 Molecular weight = 237.06amu Principal moments of inertia in cm(-1) A = 0.051238 B = 0.004600 C = 0.004228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 546.338548 B = 6085.204401 C = 6621.687931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.064 3.936 3 Si 0.908 3.092 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.258 1.258 7 C -0.370 4.370 8 H 0.112 0.888 9 O -0.239 6.239 10 C 0.423 3.577 11 O -0.541 6.541 12 C -0.119 4.119 13 C -0.076 4.076 14 C -0.068 4.068 15 C 0.096 3.904 16 N -0.454 5.454 17 C 0.066 3.934 18 C 0.050 3.950 19 F -0.131 7.131 20 C -0.101 4.101 21 H 0.283 0.717 22 H 0.133 0.867 23 H 0.142 0.858 24 H 0.171 0.829 25 H 0.166 0.834 26 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.969 -5.089 0.064 18.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C -0.142 4.142 3 Si 0.733 3.267 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.181 1.181 7 C -0.445 4.445 8 H 0.130 0.870 9 O -0.147 6.147 10 C 0.272 3.728 11 O -0.439 6.439 12 C -0.138 4.138 13 C -0.096 4.096 14 C -0.070 4.070 15 C -0.062 4.062 16 N -0.160 5.160 17 C -0.092 4.092 18 C 0.029 3.971 19 F -0.110 7.110 20 C -0.127 4.127 21 H 0.093 0.907 22 H 0.150 0.850 23 H 0.159 0.841 24 H 0.188 0.812 25 H 0.183 0.817 26 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 18.094 -4.454 0.067 18.634 hybrid contribution -0.239 -0.314 -0.014 0.395 sum 17.855 -4.768 0.053 18.481 Atomic orbital electron populations 1.69580 1.05887 1.28899 1.45527 1.24648 0.95091 0.99022 0.95391 0.86165 0.80378 0.81032 0.79152 1.19622 1.20547 1.18150 1.20777 0.76262 0.97140 1.50329 0.86997 1.83577 1.23985 1.31358 1.75751 1.20448 0.88542 0.82692 0.81076 1.90729 1.66851 1.35821 1.50534 1.22412 0.92414 0.98456 1.00503 1.21967 0.90350 0.99066 0.98193 1.19921 0.94594 0.93039 0.99422 1.23323 0.88873 0.98774 0.95210 1.67691 1.10491 1.27177 1.10683 1.22965 1.01266 0.86247 0.98689 1.18686 0.90837 0.82706 1.04898 1.91529 1.80242 1.45270 1.93927 1.21867 0.92587 0.99481 0.98732 0.90659 0.84968 0.84070 0.81210 0.81652 0.82993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.68 13.95 55.49 0.77 -23.90 15 2 C 0.06 1.78 5.50 -17.51 -0.10 1.68 15 3 Si 0.91 20.62 28.62 -169.99 -4.86 15.76 15 4 H -0.27 -6.00 7.11 56.52 0.40 -5.60 15 5 H -0.28 -6.13 7.11 56.52 0.40 -5.73 15 6 H -0.26 -5.70 7.11 56.52 0.40 -5.30 15 7 C -0.37 -10.71 10.11 30.96 0.31 -10.40 15 8 H 0.11 3.57 7.09 -52.48 -0.37 3.20 15 9 O -0.24 -6.13 8.58 -21.92 -0.19 -6.32 15 10 C 0.42 9.71 7.82 33.90 0.27 9.98 15 11 O -0.54 -14.05 15.48 -19.40 -0.30 -14.35 15 12 C -0.12 -1.94 9.54 -37.56 -0.36 -2.30 15 13 C -0.08 -1.06 9.48 -37.12 -0.35 -1.42 15 14 C -0.07 -0.80 5.88 -104.92 -0.62 -1.42 15 15 C 0.10 1.11 10.59 -17.03 -0.18 0.93 15 16 N -0.45 -5.33 10.34 -12.77 -0.13 -5.46 15 17 C 0.07 0.67 11.16 -17.37 -0.19 0.47 15 18 C 0.05 0.52 7.33 -39.34 -0.29 0.23 15 19 F -0.13 -1.35 17.28 2.25 0.04 -1.31 15 20 C -0.10 -1.06 9.93 -38.72 -0.38 -1.44 15 21 H 0.28 7.36 8.31 -40.82 -0.34 7.02 15 22 H 0.13 1.75 6.10 -52.49 -0.32 1.43 15 23 H 0.14 2.03 7.52 -52.49 -0.39 1.64 15 24 H 0.17 1.70 6.19 -52.49 -0.32 1.38 15 25 H 0.17 1.21 8.06 -52.49 -0.42 0.79 15 26 H 0.15 1.33 8.06 -52.48 -0.42 0.90 15 LS Contribution 254.25 15.07 3.83 3.83 Total: -1.00 -31.59 254.25 -4.13 -35.71 By element: Atomic # 1 Polarization: 1.13 SS G_CDS: -1.39 Total: -0.26 kcal Atomic # 6 Polarization: -1.79 SS G_CDS: -1.89 Total: -3.69 kcal Atomic # 7 Polarization: -30.01 SS G_CDS: 0.64 Total: -29.37 kcal Atomic # 8 Polarization: -20.18 SS G_CDS: -0.49 Total: -20.67 kcal Atomic # 9 Polarization: -1.35 SS G_CDS: 0.04 Total: -1.31 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -4.86 Total: 15.76 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -31.59 -4.13 -35.71 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000785848131.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.178 kcal (2) G-P(sol) polarization free energy of solvation -31.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds