Wall clock time and date at job start Sun Mar 29 2020 22:10:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31390 * 1 3 3 Si 1.86803 * 119.99729 * 2 1 4 4 H 1.48494 * 109.47388 * 270.00178 * 3 2 1 5 5 H 1.48499 * 109.47095 * 30.00886 * 3 2 1 6 6 H 1.48501 * 109.47101 * 150.00434 * 3 2 1 7 7 C 1.38853 * 120.00385 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99798 * 359.97438 * 7 2 1 9 9 O 1.34797 * 120.00208 * 179.97438 * 7 2 1 10 10 C 1.34893 * 116.99933 * 179.97438 * 9 7 2 11 11 O 1.21673 * 120.00021 * 0.02562 * 10 9 7 12 12 C 1.46140 * 120.00036 * 180.27888 * 10 9 7 13 13 C 1.35003 * 120.00247 * 179.73015 * 12 10 9 14 14 C 1.47138 * 120.00133 * 179.97438 * 13 12 10 15 15 C 1.39881 * 120.57891 * 0.02562 * 14 13 12 16 16 N 1.31612 * 120.57881 * 180.02562 * 15 14 13 17 17 C 1.31961 * 121.93482 * 359.96651 * 16 15 14 18 18 C 1.38590 * 121.10834 * 0.02562 * 17 16 15 19 19 F 1.35102 * 120.35329 * 180.02562 * 18 17 16 20 20 C 1.38530 * 119.29008 * 359.74176 * 18 17 16 21 21 H 0.97002 * 120.00114 * 359.97438 * 1 2 3 22 22 H 1.08001 * 119.99644 * 359.72258 * 12 10 9 23 23 H 1.08002 * 119.99579 * 359.97438 * 13 12 10 24 24 H 1.08000 * 119.70873 * 359.97438 * 15 14 13 25 25 H 1.07998 * 119.44304 * 180.02562 * 17 16 15 26 26 H 1.08003 * 120.87916 * 180.27899 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3139 0.0000 0.0000 3 14 2.2478 1.6178 0.0000 4 1 2.4953 2.0466 -1.4000 5 1 1.4453 2.6526 0.7002 6 1 3.5455 1.4403 0.6999 7 6 2.0082 -1.2025 -0.0005 8 1 1.4683 -2.1378 -0.0005 9 8 3.3562 -1.2024 -0.0011 10 6 3.9686 -2.4043 -0.0010 11 8 3.3060 -3.4248 -0.0010 12 6 5.4280 -2.4808 0.0046 13 6 6.0410 -3.6836 0.0101 14 6 7.5103 -3.7606 0.0152 15 6 8.2840 -2.5952 0.0149 16 7 9.5983 -2.6640 0.0189 17 6 10.2368 -3.8189 0.0240 18 6 9.5447 -5.0197 0.0249 19 9 10.2139 -6.1933 0.0306 20 6 8.1595 -5.0036 0.0257 21 1 -0.4850 0.8401 0.0004 22 1 6.0162 -1.5750 0.0042 23 1 5.4527 -4.5894 0.0108 24 1 7.7985 -1.6305 0.0105 25 1 11.3167 -3.8284 0.0277 26 1 7.5945 -5.9240 0.0308 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000785848131.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:03 Heat of formation + Delta-G solvation = -91.527145 kcal Electronic energy + Delta-G solvation = -15122.319361 eV Core-core repulsion = 12080.740084 eV Total energy + Delta-G solvation = -3041.579278 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 237.059 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -50.04399 -41.30957 -40.94147 -37.65127 -35.65061 -34.53556 -33.07200 -31.07033 -28.06758 -25.81766 -24.87994 -23.10085 -20.71903 -20.15493 -19.22383 -18.25010 -18.14345 -17.65667 -16.87631 -16.83728 -16.67694 -15.90493 -15.36798 -14.90584 -14.63614 -14.50736 -14.28648 -14.17115 -13.48545 -13.38489 -12.96144 -12.45497 -12.28140 -12.00466 -11.86881 -11.28599 -10.85613 -10.74967 -10.52527 -9.61615 -8.57700 -6.41736 -0.84574 -0.09198 0.66755 1.35902 1.40988 1.57049 2.06037 2.26150 2.35734 2.61591 2.92039 2.93902 3.30162 3.53698 3.65684 3.70030 3.99371 4.16807 4.35831 4.53012 4.70784 4.79553 5.16646 5.23733 5.46887 5.50082 5.86685 6.49351 6.67935 6.78167 7.53743 8.54705 Molecular weight = 237.06amu Principal moments of inertia in cm(-1) A = 0.051238 B = 0.004600 C = 0.004228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 546.338548 B = 6085.204401 C = 6621.687931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.015 3.985 3 Si 0.985 3.015 4 H -0.259 1.259 5 H -0.266 1.266 6 H -0.246 1.246 7 C -0.407 4.407 8 H 0.058 0.942 9 O -0.248 6.248 10 C 0.433 3.567 11 O -0.580 6.580 12 C -0.155 4.155 13 C -0.019 4.019 14 C -0.091 4.091 15 C 0.106 3.894 16 N -0.473 5.473 17 C 0.084 3.916 18 C 0.044 3.956 19 F -0.130 7.130 20 C -0.087 4.087 21 H 0.291 0.709 22 H 0.169 0.831 23 H 0.136 0.864 24 H 0.185 0.815 25 H 0.195 0.805 26 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.777 -4.584 0.077 22.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.186 4.186 3 Si 0.804 3.196 4 H -0.183 1.183 5 H -0.190 1.190 6 H -0.169 1.169 7 C -0.483 4.483 8 H 0.076 0.924 9 O -0.157 6.157 10 C 0.284 3.716 11 O -0.478 6.478 12 C -0.173 4.173 13 C -0.038 4.038 14 C -0.093 4.093 15 C -0.052 4.052 16 N -0.180 5.180 17 C -0.074 4.074 18 C 0.022 3.978 19 F -0.108 7.108 20 C -0.113 4.113 21 H 0.101 0.899 22 H 0.186 0.814 23 H 0.154 0.846 24 H 0.202 0.798 25 H 0.212 0.788 26 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 21.913 -3.982 0.081 22.272 hybrid contribution -1.068 -0.869 -0.019 1.378 sum 20.844 -4.851 0.061 21.402 Atomic orbital electron populations 1.69677 1.07715 1.30471 1.47234 1.25658 0.96021 1.02927 0.93996 0.85046 0.79171 0.75395 0.79951 1.18301 1.19034 1.16928 1.20369 0.77762 0.95890 1.54246 0.92365 1.83582 1.22043 1.32380 1.77718 1.21784 0.91032 0.81437 0.77336 1.90704 1.68627 1.37003 1.51515 1.22260 0.88214 1.00987 1.05863 1.22115 0.91733 0.97981 0.92002 1.19699 0.92903 0.94005 1.02677 1.23602 0.89018 0.99244 0.93300 1.67814 1.10455 1.27849 1.11864 1.23499 1.02691 0.85647 0.95579 1.18687 0.90698 0.82955 1.05426 1.91545 1.80134 1.45186 1.93953 1.22104 0.93078 0.99714 0.96398 0.89889 0.81385 0.84618 0.79788 0.78816 0.81306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.60 13.95 21.64 0.30 -54.30 15 2 C 0.01 0.84 5.50 84.91 0.47 1.31 15 3 Si 0.99 42.62 28.62 68.60 1.96 44.58 15 4 H -0.26 -10.57 7.11 99.48 0.71 -9.87 15 5 H -0.27 -10.74 7.11 99.48 0.71 -10.03 15 6 H -0.25 -10.06 7.11 99.48 0.71 -9.36 15 7 C -0.41 -24.92 10.11 67.97 0.69 -24.23 15 8 H 0.06 4.06 7.09 -2.91 -0.02 4.04 15 9 O -0.25 -13.10 8.58 10.26 0.09 -13.01 15 10 C 0.43 20.29 7.82 69.87 0.55 20.83 15 11 O -0.58 -31.38 15.48 19.27 0.30 -31.08 15 12 C -0.15 -4.82 9.54 23.58 0.23 -4.59 15 13 C -0.02 -0.48 9.48 23.86 0.23 -0.26 15 14 C -0.09 -1.83 5.88 -20.06 -0.12 -1.95 15 15 C 0.11 2.04 10.59 85.12 0.90 2.95 15 16 N -0.47 -9.25 10.34 -194.31 -2.01 -11.26 15 17 C 0.08 1.33 11.16 84.76 0.95 2.28 15 18 C 0.04 0.73 7.33 22.42 0.16 0.90 15 19 F -0.13 -2.21 17.28 44.97 0.78 -1.43 15 20 C -0.09 -1.52 9.93 22.82 0.23 -1.29 15 21 H 0.29 15.64 8.31 -92.71 -0.77 14.86 15 22 H 0.17 3.96 6.10 -2.91 -0.02 3.94 15 23 H 0.14 3.68 7.52 -2.91 -0.02 3.66 15 24 H 0.19 2.95 6.19 -2.91 -0.02 2.93 15 25 H 0.20 1.91 8.06 -2.91 -0.02 1.89 15 26 H 0.17 2.33 8.06 -2.91 -0.02 2.31 15 Total: -1.00 -73.10 254.25 6.92 -66.18 By element: Atomic # 1 Polarization: 3.16 SS G_CDS: 1.23 Total: 4.38 kcal Atomic # 6 Polarization: -8.33 SS G_CDS: 4.27 Total: -4.06 kcal Atomic # 7 Polarization: -63.85 SS G_CDS: -1.71 Total: -65.56 kcal Atomic # 8 Polarization: -44.48 SS G_CDS: 0.39 Total: -44.09 kcal Atomic # 9 Polarization: -2.21 SS G_CDS: 0.78 Total: -1.43 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 1.96 Total: 44.58 kcal Total: -73.10 6.92 -66.18 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000785848131.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.348 kcal (2) G-P(sol) polarization free energy of solvation -73.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds