Wall clock time and date at job start Sun Mar 29 2020 22:18:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 120.00233 * 2 1 4 4 H 1.48498 * 109.47319 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46700 * 300.00163 * 3 2 1 6 6 H 1.48495 * 109.47114 * 60.00130 * 3 2 1 7 7 C 1.37882 * 119.99806 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00107 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99761 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.46697 * 180.02562 * 9 7 2 11 11 O 1.45205 * 109.46929 * 179.97438 * 10 9 7 12 12 C 1.34687 * 117.00136 * 179.97438 * 11 10 9 13 13 O 1.21432 * 119.99790 * 0.02562 * 12 11 10 14 14 C 1.48045 * 119.99845 * 179.97438 * 12 11 10 15 15 C 1.39215 * 119.69103 * 180.02562 * 14 12 11 16 16 C 1.38745 * 119.18055 * 179.97438 * 15 14 12 17 17 C 1.38366 * 118.55898 * 359.74841 * 16 15 14 18 18 C 1.39267 * 119.31564 * 0.50273 * 17 16 15 19 19 O 1.35664 * 119.61430 * 179.76866 * 18 17 16 20 20 N 1.31908 * 120.77267 * 359.48272 * 18 17 16 21 21 H 0.97006 * 119.99470 * 359.97438 * 1 2 3 22 22 H 1.09000 * 109.47383 * 60.00040 * 9 7 2 23 23 H 1.09005 * 109.46973 * 300.00169 * 9 7 2 24 24 H 1.08999 * 109.47699 * 60.00167 * 10 9 7 25 25 H 1.08996 * 109.47286 * 299.99543 * 10 9 7 26 26 H 1.07992 * 120.40417 * 359.96076 * 15 14 12 27 27 H 1.07998 * 120.71765 * 179.97438 * 16 15 14 28 28 H 1.08003 * 120.33756 * 180.26352 * 17 16 15 29 29 H 0.96700 * 114.00053 * 269.72175 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 8 1.5191 -4.9196 0.0001 12 6 2.2525 -6.0492 -0.0004 13 8 3.4652 -5.9857 -0.0008 14 6 1.5803 -7.3682 0.0008 15 6 2.3447 -8.5317 0.0008 16 6 1.7037 -9.7622 0.0025 17 6 0.3203 -9.7874 0.0093 18 6 -0.3836 -8.5858 0.0037 19 8 -1.7401 -8.6034 0.0056 20 7 0.2532 -7.4306 0.0022 21 1 -0.4850 0.8401 0.0004 22 1 0.6239 -2.5567 -0.8903 23 1 0.6246 -2.5570 0.8897 24 1 2.8718 -3.6044 0.8894 25 1 2.8717 -3.6044 -0.8905 26 1 3.4233 -8.4771 -0.0006 27 1 2.2723 -10.6804 0.0021 28 1 -0.2081 -10.7293 0.0150 29 1 -2.1346 -8.6091 -0.8773 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787545166.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:18:59 Heat of formation + Delta-G solvation = -93.387506 kcal Electronic energy + Delta-G solvation = -15643.925409 eV Core-core repulsion = 12725.725766 eV Total energy + Delta-G solvation = -2918.199644 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 237.083 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.89682 -39.57131 -37.25628 -36.10091 -33.36778 -32.91776 -30.83152 -30.12681 -25.85239 -24.46099 -23.51603 -21.51071 -20.70475 -18.88205 -18.05423 -16.75003 -16.47134 -16.18288 -15.99685 -15.79595 -15.30967 -14.49350 -13.87784 -13.63345 -12.95773 -12.89805 -12.44160 -12.33751 -11.97583 -11.23349 -11.02258 -10.80602 -10.75641 -10.52979 -10.29063 -9.80643 -9.63994 -9.53317 -9.27215 -9.24778 -8.41590 -6.07090 -4.11562 0.29908 0.85092 2.46588 2.87259 3.29590 3.31511 3.36958 3.41884 3.61419 4.28945 4.41245 4.62032 4.69521 4.75901 5.17029 5.18476 5.29284 5.62779 5.73135 6.04694 6.10046 6.10252 6.65301 6.85888 7.20259 7.48854 7.61615 7.67301 7.89458 8.14522 8.27177 8.94331 9.52513 11.04430 Molecular weight = 237.08amu Principal moments of inertia in cm(-1) A = 0.044485 B = 0.004540 C = 0.004133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.278541 B = 6166.379161 C = 6772.685424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.060 3.940 3 Si 0.900 3.100 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.282 1.282 7 C -0.525 4.525 8 H 0.060 0.940 9 C 0.024 3.976 10 C 0.072 3.928 11 O -0.329 6.329 12 C 0.513 3.487 13 O -0.505 6.505 14 C 0.127 3.873 15 C -0.121 4.121 16 C -0.068 4.068 17 C -0.161 4.161 18 C 0.308 3.692 19 O -0.478 6.478 20 N -0.450 5.450 21 H 0.263 0.737 22 H 0.029 0.971 23 H 0.030 0.970 24 H 0.061 0.939 25 H 0.061 0.939 26 H 0.155 0.845 27 H 0.150 0.850 28 H 0.147 0.853 29 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.831 -20.888 -1.716 20.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.142 4.142 3 Si 0.727 3.273 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.208 1.208 7 C -0.564 4.564 8 H 0.078 0.922 9 C -0.013 4.013 10 C -0.001 4.001 11 O -0.243 6.243 12 C 0.355 3.645 13 O -0.394 6.394 14 C -0.010 4.010 15 C -0.141 4.141 16 C -0.094 4.094 17 C -0.183 4.183 18 C 0.127 3.873 19 O -0.285 6.285 20 N -0.172 5.172 21 H 0.072 0.928 22 H 0.048 0.952 23 H 0.048 0.952 24 H 0.079 0.921 25 H 0.079 0.921 26 H 0.173 0.827 27 H 0.168 0.832 28 H 0.165 0.835 29 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges 0.579 -19.909 -1.114 19.949 hybrid contribution 0.761 0.245 -0.457 0.921 sum 1.339 -19.665 -1.571 19.773 Atomic orbital electron populations 1.69997 1.06088 1.26837 1.49808 1.24996 0.94917 0.99391 0.94927 0.86413 0.80028 0.83176 0.77675 1.19597 1.20855 1.20845 1.21015 0.93190 0.90069 1.52094 0.92177 1.19177 0.94175 0.88826 0.99098 1.23770 0.96550 0.78650 1.01084 1.86724 1.41221 1.15107 1.81291 1.20711 0.85143 0.85125 0.73488 1.90818 1.14393 1.87967 1.46245 1.20043 0.88253 0.91991 1.00713 1.22162 1.02603 0.91387 0.97945 1.21515 0.93826 0.98232 0.95835 1.22401 0.95159 0.99289 1.01413 1.19163 0.84879 0.87362 0.95940 1.84811 1.13930 1.95548 1.34226 1.67190 1.09777 1.30127 1.10081 0.92772 0.95223 0.95202 0.92061 0.92056 0.82693 0.83200 0.83475 0.73863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.87 13.29 55.43 0.74 -26.13 15 2 C 0.06 1.73 5.46 -17.82 -0.10 1.63 15 3 Si 0.90 21.69 29.54 -169.99 -5.02 16.67 15 4 H -0.27 -6.39 7.11 56.52 0.40 -5.99 15 5 H -0.28 -6.71 7.11 56.52 0.40 -6.31 15 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 15 7 C -0.53 -15.06 9.11 -34.44 -0.31 -15.37 15 8 H 0.06 1.66 7.74 -52.49 -0.41 1.25 15 9 C 0.02 0.66 5.35 -27.88 -0.15 0.51 15 10 C 0.07 1.66 5.41 37.16 0.20 1.86 15 11 O -0.33 -7.21 10.04 -40.46 -0.41 -7.62 15 12 C 0.51 9.75 7.95 34.75 0.28 10.03 15 13 O -0.51 -10.01 16.10 -19.21 -0.31 -10.32 15 14 C 0.13 1.97 6.74 -83.04 -0.56 1.41 15 15 C -0.12 -1.36 9.63 -39.03 -0.38 -1.73 15 16 C -0.07 -0.55 10.16 -39.35 -0.40 -0.95 15 17 C -0.16 -1.37 10.05 -39.15 -0.39 -1.76 15 18 C 0.31 3.74 7.74 -17.14 -0.13 3.61 15 19 O -0.48 -5.08 13.56 -18.69 -0.25 -5.34 15 20 N -0.45 -7.20 10.15 -9.89 -0.10 -7.30 15 21 H 0.26 7.41 8.31 -40.82 -0.34 7.07 15 22 H 0.03 0.84 8.14 -51.93 -0.42 0.42 15 23 H 0.03 0.85 8.14 -51.93 -0.42 0.43 15 24 H 0.06 1.38 8.14 -51.93 -0.42 0.96 15 25 H 0.06 1.37 8.14 -51.93 -0.42 0.95 15 26 H 0.16 1.55 7.63 -52.49 -0.40 1.15 15 27 H 0.15 0.63 8.06 -52.49 -0.42 0.20 15 28 H 0.15 0.78 8.06 -52.48 -0.42 0.36 15 29 H 0.40 2.19 9.06 45.56 0.41 2.60 15 LS Contribution 273.01 15.07 4.11 4.11 Total: -1.00 -34.68 273.01 -5.25 -39.93 By element: Atomic # 1 Polarization: -1.17 SS G_CDS: -2.06 Total: -3.24 kcal Atomic # 6 Polarization: 1.18 SS G_CDS: -1.94 Total: -0.76 kcal Atomic # 7 Polarization: -34.07 SS G_CDS: 0.64 Total: -33.44 kcal Atomic # 8 Polarization: -22.30 SS G_CDS: -0.97 Total: -23.27 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -34.68 -5.25 -39.93 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787545166.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.462 kcal (2) G-P(sol) polarization free energy of solvation -34.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds