Wall clock time and date at job start Sun Mar 29 2020 22:18:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 120.00233 * 2 1 4 4 H 1.48498 * 109.47319 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46700 * 300.00163 * 3 2 1 6 6 H 1.48495 * 109.47114 * 60.00130 * 3 2 1 7 7 C 1.37882 * 119.99806 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00107 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99761 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.46697 * 180.02562 * 9 7 2 11 11 O 1.45205 * 109.46929 * 179.97438 * 10 9 7 12 12 C 1.34687 * 117.00136 * 179.97438 * 11 10 9 13 13 O 1.21432 * 119.99790 * 0.02562 * 12 11 10 14 14 C 1.48045 * 119.99845 * 179.97438 * 12 11 10 15 15 C 1.39215 * 119.69103 * 180.02562 * 14 12 11 16 16 C 1.38745 * 119.18055 * 179.97438 * 15 14 12 17 17 C 1.38366 * 118.55898 * 359.74841 * 16 15 14 18 18 C 1.39267 * 119.31564 * 0.50273 * 17 16 15 19 19 O 1.35664 * 119.61430 * 179.76866 * 18 17 16 20 20 N 1.31908 * 120.77267 * 359.48272 * 18 17 16 21 21 H 0.97006 * 119.99470 * 359.97438 * 1 2 3 22 22 H 1.09000 * 109.47383 * 60.00040 * 9 7 2 23 23 H 1.09005 * 109.46973 * 300.00169 * 9 7 2 24 24 H 1.08999 * 109.47699 * 60.00167 * 10 9 7 25 25 H 1.08996 * 109.47286 * 299.99543 * 10 9 7 26 26 H 1.07992 * 120.40417 * 359.96076 * 15 14 12 27 27 H 1.07998 * 120.71765 * 179.97438 * 16 15 14 28 28 H 1.08003 * 120.33756 * 180.26352 * 17 16 15 29 29 H 0.96700 * 114.00053 * 269.72175 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 8 1.5191 -4.9196 0.0001 12 6 2.2525 -6.0492 -0.0004 13 8 3.4652 -5.9857 -0.0008 14 6 1.5803 -7.3682 0.0008 15 6 2.3447 -8.5317 0.0008 16 6 1.7037 -9.7622 0.0025 17 6 0.3203 -9.7874 0.0093 18 6 -0.3836 -8.5858 0.0037 19 8 -1.7401 -8.6034 0.0056 20 7 0.2532 -7.4306 0.0022 21 1 -0.4850 0.8401 0.0004 22 1 0.6239 -2.5567 -0.8903 23 1 0.6246 -2.5570 0.8897 24 1 2.8718 -3.6044 0.8894 25 1 2.8717 -3.6044 -0.8905 26 1 3.4233 -8.4771 -0.0006 27 1 2.2723 -10.6804 0.0021 28 1 -0.2081 -10.7293 0.0150 29 1 -2.1346 -8.6091 -0.8773 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787545166.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:18:58 Heat of formation + Delta-G solvation = -120.850851 kcal Electronic energy + Delta-G solvation = -15645.116310 eV Core-core repulsion = 12725.725766 eV Total energy + Delta-G solvation = -2919.390544 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 237.083 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.98808 -40.90315 -38.20654 -37.63952 -35.48500 -33.83730 -32.39958 -31.57507 -27.51116 -25.98167 -24.38065 -23.17963 -22.35622 -19.86070 -19.38153 -18.44005 -17.79834 -17.63094 -17.27343 -16.98722 -16.54784 -16.25640 -15.27548 -14.70279 -14.45386 -14.34139 -14.08791 -13.27374 -13.17961 -13.04591 -12.80827 -12.64582 -12.61276 -12.16198 -11.68946 -11.53802 -11.43951 -11.09894 -10.64382 -10.61333 -10.15906 -8.28496 -6.42770 -0.65859 0.06252 1.23341 1.39057 1.41518 1.50803 1.57682 2.36748 2.43212 2.63983 3.05571 3.36011 3.77324 3.81075 3.97516 4.16924 4.17472 4.31085 4.46864 4.63992 4.91123 4.95505 5.17145 5.38590 5.41567 5.42199 5.69750 6.02692 6.35561 6.58925 6.71176 6.82465 7.27206 8.84770 Molecular weight = 237.08amu Principal moments of inertia in cm(-1) A = 0.044485 B = 0.004540 C = 0.004133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.278541 B = 6166.379161 C = 6772.685424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.003 3.997 3 Si 0.979 3.021 4 H -0.260 1.260 5 H -0.274 1.274 6 H -0.275 1.275 7 C -0.549 4.549 8 H 0.069 0.931 9 C 0.031 3.969 10 C 0.087 3.913 11 O -0.351 6.351 12 C 0.509 3.491 13 O -0.521 6.521 14 C 0.088 3.912 15 C -0.110 4.110 16 C -0.049 4.049 17 C -0.133 4.133 18 C 0.293 3.707 19 O -0.491 6.491 20 N -0.504 5.504 21 H 0.268 0.732 22 H 0.004 0.996 23 H 0.002 0.998 24 H 0.065 0.935 25 H 0.067 0.933 26 H 0.166 0.834 27 H 0.203 0.797 28 H 0.191 0.809 29 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.894 -23.062 -1.811 23.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.196 4.196 3 Si 0.802 3.198 4 H -0.184 1.184 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.586 4.586 8 H 0.087 0.913 9 C -0.006 4.006 10 C 0.014 3.986 11 O -0.266 6.266 12 C 0.354 3.646 13 O -0.411 6.411 14 C -0.047 4.047 15 C -0.130 4.130 16 C -0.074 4.074 17 C -0.154 4.154 18 C 0.111 3.889 19 O -0.301 6.301 20 N -0.227 5.227 21 H 0.077 0.923 22 H 0.022 0.978 23 H 0.020 0.980 24 H 0.083 0.917 25 H 0.085 0.915 26 H 0.184 0.816 27 H 0.220 0.780 28 H 0.208 0.792 29 H 0.283 0.717 Dipole moment (debyes) X Y Z Total from point charges 1.645 -22.109 -1.223 22.204 hybrid contribution 0.322 0.725 -0.438 0.906 sum 1.967 -21.384 -1.661 21.538 Atomic orbital electron populations 1.70131 1.08003 1.28277 1.50393 1.26053 0.95878 1.03687 0.93992 0.85194 0.78901 0.77664 0.78026 1.18354 1.19971 1.20038 1.21399 0.93793 0.90950 1.52503 0.91311 1.18978 0.94349 0.90841 0.96444 1.23302 0.95157 0.78706 1.01453 1.86704 1.41978 1.15625 1.82259 1.21487 0.85267 0.85501 0.72384 1.90778 1.14884 1.88230 1.47188 1.19742 0.88764 0.90906 1.05293 1.22404 1.02990 0.91160 0.96464 1.22104 0.93804 0.98480 0.93050 1.22851 0.95452 0.99304 0.97791 1.19575 0.85349 0.87659 0.96358 1.84771 1.13658 1.95483 1.36171 1.66935 1.10454 1.33072 1.12203 0.92310 0.97800 0.97980 0.91686 0.91500 0.81627 0.77980 0.79167 0.71671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.58 13.29 21.45 0.28 -57.30 15 2 C 0.00 0.15 5.46 84.66 0.46 0.62 15 3 Si 0.98 44.66 29.54 68.60 2.03 46.68 15 4 H -0.26 -11.27 7.11 99.48 0.71 -10.56 15 5 H -0.27 -12.09 7.11 99.48 0.71 -11.38 15 6 H -0.27 -12.15 7.11 99.48 0.71 -11.44 15 7 C -0.55 -32.23 9.11 25.60 0.23 -31.99 15 8 H 0.07 3.83 7.74 -2.91 -0.02 3.80 15 9 C 0.03 1.78 5.35 29.85 0.16 1.94 15 10 C 0.09 4.20 5.41 71.98 0.39 4.59 15 11 O -0.35 -16.25 10.04 -55.96 -0.56 -16.81 15 12 C 0.51 20.12 7.95 70.42 0.56 20.68 15 13 O -0.52 -21.10 16.10 20.06 0.32 -20.78 15 14 C 0.09 2.75 6.74 41.83 0.28 3.03 15 15 C -0.11 -2.23 9.63 22.63 0.22 -2.01 15 16 C -0.05 -0.55 10.16 22.42 0.23 -0.33 15 17 C -0.13 -1.70 10.05 22.55 0.23 -1.47 15 18 C 0.29 6.68 7.74 84.93 0.66 7.34 15 19 O -0.49 -9.88 13.56 -89.80 -1.22 -11.10 15 20 N -0.50 -16.39 10.15 -298.24 -3.03 -19.41 15 21 H 0.27 15.39 8.31 -92.70 -0.77 14.62 15 22 H 0.00 0.22 8.14 -2.39 -0.02 0.20 15 23 H 0.00 0.11 8.14 -2.38 -0.02 0.09 15 24 H 0.06 3.04 8.14 -2.39 -0.02 3.02 15 25 H 0.07 3.11 8.14 -2.39 -0.02 3.09 15 26 H 0.17 2.93 7.63 -2.91 -0.02 2.91 15 27 H 0.20 0.24 8.06 -2.91 -0.02 0.21 15 28 H 0.19 0.82 8.06 -2.91 -0.02 0.79 15 29 H 0.42 4.15 9.06 -74.06 -0.67 3.48 15 Total: -1.00 -79.23 273.01 1.76 -77.48 By element: Atomic # 1 Polarization: -1.66 SS G_CDS: 0.51 Total: -1.15 kcal Atomic # 6 Polarization: -1.02 SS G_CDS: 3.42 Total: 2.39 kcal Atomic # 7 Polarization: -73.97 SS G_CDS: -2.74 Total: -76.71 kcal Atomic # 8 Polarization: -47.23 SS G_CDS: -1.46 Total: -48.69 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.68 kcal Total: -79.23 1.76 -77.48 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787545166.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.371 kcal (2) G-P(sol) polarization free energy of solvation -79.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds