Wall clock time and date at job start Sun Mar 29 2020 22:18:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31448 * 1 3 3 Si 1.86799 * 119.99886 * 2 1 4 4 H 1.48495 * 109.47227 * 239.99581 * 3 2 1 5 5 H 1.48502 * 109.47499 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47213 * 119.99698 * 3 2 1 7 7 C 1.38745 * 120.00045 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00060 * 180.02562 * 7 2 1 9 9 O 1.34920 * 120.00017 * 0.02562 * 7 2 1 10 10 C 1.34320 * 116.99950 * 180.02562 * 9 7 2 11 11 O 1.21207 * 119.99795 * 0.02562 * 10 9 7 12 12 C 1.50704 * 119.99868 * 180.02562 * 10 9 7 13 13 O 1.42895 * 109.47012 * 179.97438 * 12 10 9 14 14 C 1.42900 * 113.99877 * 179.97438 * 13 12 10 15 15 C 1.50703 * 109.46665 * 179.97438 * 14 13 12 16 16 C 1.38223 * 119.62264 * 0.02656 * 15 14 13 17 17 C 1.38628 * 119.16031 * 179.97438 * 16 15 14 18 18 C 1.38672 * 118.42475 * 359.97438 * 17 16 15 19 19 C 1.38186 * 119.15778 * 0.02562 * 18 17 16 20 20 N 1.31856 * 119.61279 * 180.02562 * 15 14 13 21 21 H 0.96998 * 119.99776 * 0.02562 * 1 2 3 22 22 H 1.09002 * 109.46796 * 59.99695 * 12 10 9 23 23 H 1.09002 * 109.46864 * 299.99870 * 12 10 9 24 24 H 1.09000 * 109.46932 * 60.00268 * 14 13 12 25 25 H 1.08993 * 109.47528 * 300.00136 * 14 13 12 26 26 H 1.07995 * 120.41821 * 359.95030 * 16 15 14 27 27 H 1.08006 * 120.78822 * 180.02562 * 17 16 15 28 28 H 1.07993 * 120.42192 * 179.97438 * 18 17 16 29 29 H 1.08001 * 119.60956 * 180.27218 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3145 0.0000 0.0000 3 14 2.2484 1.6177 0.0000 4 1 3.1022 1.6964 -1.2124 5 1 1.2835 2.7465 0.0006 6 1 3.1021 1.6965 1.2125 7 6 2.0082 -1.2016 0.0005 8 1 3.0882 -1.2016 0.0010 9 8 1.3336 -2.3700 0.0005 10 6 2.0652 -3.4965 0.0016 11 8 3.2756 -3.4330 0.0030 12 6 1.3810 -4.8393 0.0011 13 8 2.3652 -5.8753 0.0018 14 6 1.8190 -7.1958 0.0020 15 6 2.9400 -8.2030 0.0022 16 6 4.2513 -7.7658 0.0027 17 6 5.2750 -8.7006 0.0034 18 6 4.9401 -10.0462 0.0040 19 6 3.6064 -10.4081 0.0035 20 7 2.6585 -9.4911 0.0018 21 1 -0.4850 0.8401 -0.0004 22 1 0.7592 -4.9298 -0.8896 23 1 0.7572 -4.9295 0.8904 24 1 1.2057 -7.3354 -0.8882 25 1 1.2049 -7.3349 0.8917 26 1 4.4754 -6.7093 0.0022 27 1 6.3089 -8.3882 0.0042 28 1 5.7117 -10.8018 0.0042 29 1 3.3373 -11.4541 0.0085 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805692626.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:18:55 Heat of formation + Delta-G solvation = -83.949254 kcal Electronic energy + Delta-G solvation = -15622.672291 eV Core-core repulsion = 12704.881920 eV Total energy + Delta-G solvation = -2917.790371 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 237.083 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.25820 -39.06183 -37.49891 -35.02106 -32.69806 -32.16690 -31.91391 -28.45270 -26.38737 -24.89520 -23.48640 -22.03486 -20.32343 -17.78096 -17.32301 -16.67414 -16.43198 -16.17862 -15.39639 -15.28682 -14.70638 -14.64072 -14.29553 -13.68914 -13.65302 -13.16042 -12.41339 -12.25268 -11.75089 -11.58792 -11.44819 -11.15457 -10.46849 -10.41074 -9.97695 -9.83978 -9.66836 -9.53674 -8.98196 -8.95041 -8.58587 -6.42082 -4.10434 1.02353 1.22276 3.06216 3.12854 3.20585 3.28792 3.50058 3.70526 4.01577 4.39048 4.71859 4.78044 4.87768 5.02782 5.09939 5.26646 5.27509 5.39243 5.52642 5.58103 5.70690 5.80190 6.04192 6.19520 6.55438 6.64365 7.23937 7.38830 7.86707 7.93860 8.69964 9.06504 9.82126 10.75823 Molecular weight = 237.08amu Principal moments of inertia in cm(-1) A = 0.066624 B = 0.004159 C = 0.003926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 420.169741 B = 6731.272096 C = 7130.996302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.866 5.866 2 C 0.042 3.958 3 Si 0.946 3.054 4 H -0.270 1.270 5 H -0.279 1.279 6 H -0.270 1.270 7 C -0.382 4.382 8 H 0.096 0.904 9 O -0.213 6.213 10 C 0.399 3.601 11 O -0.538 6.538 12 C 0.084 3.916 13 O -0.365 6.365 14 C 0.112 3.888 15 C 0.127 3.873 16 C -0.142 4.142 17 C -0.078 4.078 18 C -0.179 4.179 19 C 0.096 3.904 20 N -0.485 5.485 21 H 0.270 0.730 22 H 0.083 0.917 23 H 0.083 0.917 24 H 0.075 0.925 25 H 0.075 0.925 26 H 0.153 0.847 27 H 0.135 0.865 28 H 0.133 0.867 29 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.671 -16.217 0.006 16.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.162 4.162 3 Si 0.771 3.229 4 H -0.195 1.195 5 H -0.204 1.204 6 H -0.195 1.195 7 C -0.458 4.458 8 H 0.114 0.886 9 O -0.121 6.121 10 C 0.244 3.756 11 O -0.434 6.434 12 C 0.007 3.993 13 O -0.283 6.283 14 C 0.035 3.965 15 C -0.010 4.010 16 C -0.162 4.162 17 C -0.104 4.104 18 C -0.199 4.199 19 C -0.061 4.061 20 N -0.195 5.195 21 H 0.080 0.920 22 H 0.101 0.899 23 H 0.101 0.899 24 H 0.093 0.907 25 H 0.093 0.907 26 H 0.170 0.830 27 H 0.153 0.847 28 H 0.151 0.849 29 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 4.118 -16.229 0.006 16.744 hybrid contribution 1.060 0.896 0.000 1.388 sum 5.178 -15.333 0.006 16.184 Atomic orbital electron populations 1.69985 1.05980 1.27841 1.46511 1.25339 0.95860 0.98828 0.96175 0.85705 0.78584 0.79279 0.79362 1.19467 1.20364 1.19472 1.21176 0.92416 0.79526 1.52671 0.88630 1.83843 1.39144 1.13073 1.76038 1.22634 0.86776 0.86716 0.79470 1.90571 1.15508 1.87801 1.49485 1.21510 0.90017 0.84716 1.03058 1.87862 1.32066 1.12708 1.95667 1.20912 0.92526 0.80876 1.02175 1.20828 0.93656 0.90720 0.95781 1.22158 0.92857 1.02528 0.98639 1.21678 1.00139 0.92923 0.95642 1.22132 0.98033 0.97015 1.02725 1.22621 0.88754 0.98711 0.96044 1.67205 1.38322 1.01194 1.12808 0.91989 0.89930 0.89923 0.90694 0.90684 0.82963 0.84720 0.84936 0.82719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.28 13.67 55.48 0.76 -24.52 15 2 C 0.04 1.18 5.49 -17.53 -0.10 1.08 15 3 Si 0.95 21.31 29.55 -169.99 -5.02 16.28 15 4 H -0.27 -5.94 7.11 56.52 0.40 -5.54 15 5 H -0.28 -6.00 7.11 56.52 0.40 -5.60 15 6 H -0.27 -5.94 7.11 56.52 0.40 -5.54 15 7 C -0.38 -11.32 9.64 30.92 0.30 -11.03 15 8 H 0.10 2.85 6.86 -52.48 -0.36 2.49 15 9 O -0.21 -6.09 9.75 -20.73 -0.20 -6.29 15 10 C 0.40 9.96 7.98 36.01 0.29 10.25 15 11 O -0.54 -14.90 15.74 -25.78 -0.41 -15.31 15 12 C 0.08 1.54 6.53 36.01 0.24 1.77 15 13 O -0.36 -6.42 8.33 -55.15 -0.46 -6.88 15 14 C 0.11 1.56 6.48 36.01 0.23 1.79 15 15 C 0.13 1.81 6.78 -82.59 -0.56 1.25 15 16 C -0.14 -1.99 9.41 -39.44 -0.37 -2.36 15 17 C -0.08 -0.87 10.18 -39.28 -0.40 -1.27 15 18 C -0.18 -1.73 10.11 -39.44 -0.40 -2.12 15 19 C 0.10 1.02 11.18 -17.55 -0.20 0.82 15 20 N -0.48 -6.51 10.27 -9.47 -0.10 -6.60 15 21 H 0.27 7.23 8.31 -40.82 -0.34 6.89 15 22 H 0.08 1.30 8.14 -51.93 -0.42 0.88 15 23 H 0.08 1.30 8.14 -51.93 -0.42 0.88 15 24 H 0.08 0.92 8.14 -51.93 -0.42 0.50 15 25 H 0.08 0.93 8.14 -51.93 -0.42 0.50 15 26 H 0.15 2.38 7.00 -52.49 -0.37 2.01 15 27 H 0.13 1.18 8.06 -52.48 -0.42 0.76 15 28 H 0.13 0.86 8.06 -52.49 -0.42 0.44 15 29 H 0.16 1.14 8.06 -52.49 -0.42 0.72 15 LS Contribution 271.32 15.07 4.09 4.09 Total: -1.00 -34.51 271.32 -5.13 -39.64 By element: Atomic # 1 Polarization: 2.22 SS G_CDS: -2.82 Total: -0.60 kcal Atomic # 6 Polarization: 1.17 SS G_CDS: -0.97 Total: 0.20 kcal Atomic # 7 Polarization: -31.78 SS G_CDS: 0.66 Total: -31.12 kcal Atomic # 8 Polarization: -27.41 SS G_CDS: -1.07 Total: -28.48 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -34.51 -5.13 -39.64 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805692626.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.312 kcal (2) G-P(sol) polarization free energy of solvation -34.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds