Wall clock time and date at job start Sun Mar 29 2020 22:19:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 119.99669 * 2 1 4 4 H 1.48508 * 109.47141 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47162 * 299.99685 * 3 2 1 6 6 H 1.48501 * 109.47494 * 59.99663 * 3 2 1 7 7 C 1.37874 * 119.99835 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99766 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.46866 * 179.97438 * 9 7 2 11 11 O 1.45200 * 109.47003 * 179.97438 * 10 9 7 12 12 C 1.34867 * 117.00274 * 180.02562 * 11 10 9 13 13 O 1.21601 * 119.99560 * 359.97438 * 12 11 10 14 14 C 1.46662 * 119.99948 * 180.02562 * 12 11 10 15 15 C 1.36343 * 125.80856 * 179.71855 * 14 12 11 16 16 C 1.41521 * 106.97357 * 179.84769 * 15 14 12 17 17 C 1.46625 * 126.50523 * 180.15389 * 16 15 14 18 18 O 1.21327 * 119.99842 * 180.27748 * 17 16 15 19 19 C 1.38651 * 106.98469 * 0.40859 * 16 15 14 20 20 N 1.34084 * 108.36317 * 359.74432 * 19 16 15 21 21 H 0.96999 * 125.34852 * 180.02562 * 20 19 16 22 22 H 0.96992 * 120.00038 * 0.02562 * 1 2 3 23 23 H 1.09000 * 109.47247 * 59.99949 * 9 7 2 24 24 H 1.09001 * 109.47358 * 299.99375 * 9 7 2 25 25 H 1.08993 * 109.46955 * 300.00219 * 10 9 7 26 26 H 1.09000 * 109.47050 * 60.00048 * 10 9 7 27 27 H 1.07995 * 126.50884 * 359.97438 * 15 14 12 28 28 H 1.08000 * 120.00271 * 0.27560 * 17 16 15 29 29 H 1.07997 * 125.81736 * 179.76798 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3465 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 8 1.5195 -4.9196 0.0011 12 6 2.2540 -6.0507 0.0018 13 8 3.4684 -5.9869 0.0013 14 6 1.5882 -7.3574 0.0018 15 6 2.2112 -8.5702 -0.0030 16 6 1.1960 -9.5562 0.0027 17 6 1.3914 -11.0093 0.0035 18 8 0.4309 -11.7506 0.0036 19 6 -0.0184 -8.8872 0.0014 20 7 0.2256 -7.5687 0.0010 21 1 -0.4502 -6.8729 0.0005 22 1 -0.4850 0.8400 -0.0004 23 1 0.6248 -2.5571 -0.8897 24 1 0.6241 -2.5568 0.8903 25 1 2.8721 -3.6042 -0.8894 26 1 2.8721 -3.6043 0.8905 27 1 3.2769 -8.7450 -0.0079 28 1 2.3904 -11.4199 0.0041 29 1 -0.9945 -9.3493 0.0012 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815254691.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:19:02 Heat of formation + Delta-G solvation = -90.613492 kcal Electronic energy + Delta-G solvation = -15426.685847 eV Core-core repulsion = 12508.606493 eV Total energy + Delta-G solvation = -2918.079354 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 237.083 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.68194 -39.63226 -38.55600 -36.21142 -33.44048 -31.81958 -30.63774 -29.66571 -25.47028 -24.54938 -23.28075 -21.02575 -20.51044 -19.76082 -18.79163 -16.93333 -16.17178 -16.08807 -15.93043 -15.36018 -14.84225 -14.82076 -14.52502 -13.81433 -13.70290 -13.15904 -12.94058 -12.56412 -12.41580 -11.35944 -11.15705 -10.86382 -10.82264 -10.50390 -9.99449 -9.78597 -9.73877 -9.42439 -9.37817 -8.66382 -8.52330 -6.18418 -4.22990 1.14599 1.25073 2.73171 2.91792 3.03170 3.22332 3.22811 3.30663 3.35626 4.24509 4.33343 4.72569 4.86828 4.98430 5.18664 5.23066 5.48439 5.74578 5.96249 5.98165 6.22708 6.43260 6.51905 6.76377 6.99574 7.38084 7.44612 7.50463 7.77467 8.01559 8.14840 8.82640 9.42113 10.93118 Molecular weight = 237.08amu Principal moments of inertia in cm(-1) A = 0.074816 B = 0.003837 C = 0.003659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 374.161333 B = 7296.187627 C = 7649.902260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.060 3.940 3 Si 0.901 3.099 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.527 4.527 8 H 0.061 0.939 9 C 0.024 3.976 10 C 0.077 3.923 11 O -0.362 6.362 12 C 0.526 3.474 13 O -0.503 6.503 14 C -0.037 4.037 15 C -0.057 4.057 16 C -0.297 4.297 17 C 0.416 3.584 18 O -0.484 6.484 19 C 0.109 3.891 20 N -0.511 5.511 21 H 0.433 0.567 22 H 0.263 0.737 23 H 0.028 0.972 24 H 0.028 0.972 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.161 0.839 28 H 0.104 0.896 29 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.722 -16.661 -0.006 16.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.142 4.142 3 Si 0.728 3.272 4 H -0.195 1.195 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.565 4.565 8 H 0.079 0.921 9 C -0.013 4.013 10 C 0.005 3.995 11 O -0.279 6.279 12 C 0.371 3.629 13 O -0.392 6.392 14 C -0.146 4.146 15 C -0.081 4.081 16 C -0.304 4.304 17 C 0.277 3.723 18 O -0.359 6.359 19 C -0.036 4.036 20 N -0.105 5.105 21 H 0.273 0.727 22 H 0.073 0.927 23 H 0.046 0.954 24 H 0.046 0.954 25 H 0.080 0.920 26 H 0.080 0.920 27 H 0.179 0.821 28 H 0.120 0.880 29 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 0.381 -16.659 -0.007 16.664 hybrid contribution 0.262 1.530 0.000 1.552 sum 0.643 -15.130 -0.007 15.143 Atomic orbital electron populations 1.69976 1.06124 1.26988 1.49776 1.24992 0.94943 0.99492 0.94761 0.86393 0.80068 0.82991 0.77742 1.19525 1.20792 1.20796 1.21004 0.93280 0.89992 1.52232 0.92086 1.19189 0.94196 0.89072 0.98811 1.23717 0.96428 0.78031 1.01306 1.86574 1.42316 1.15914 1.83063 1.19817 0.85564 0.83929 0.73635 1.90878 1.14082 1.87643 1.46620 1.19309 0.82724 0.92859 1.19659 1.21271 0.99730 0.89001 0.98125 1.20752 0.92770 0.96555 1.20333 1.23096 0.93937 0.86008 0.69299 1.90528 1.46175 1.62013 1.37182 1.22734 1.00279 0.82267 0.98315 1.41957 1.07641 1.08153 1.52713 0.72744 0.92713 0.95390 0.95383 0.91976 0.91988 0.82106 0.87970 0.79605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.81 13.29 55.43 0.74 -25.07 15 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 15 3 Si 0.90 21.01 29.54 -169.99 -5.02 15.99 15 4 H -0.27 -6.19 7.11 56.52 0.40 -5.79 15 5 H -0.28 -6.50 7.11 56.52 0.40 -6.10 15 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 15 7 C -0.53 -14.47 9.11 -34.44 -0.31 -14.78 15 8 H 0.06 1.62 7.74 -52.48 -0.41 1.22 15 9 C 0.02 0.62 5.35 -27.88 -0.15 0.47 15 10 C 0.08 1.65 5.42 37.16 0.20 1.85 15 11 O -0.36 -6.80 10.23 -40.95 -0.42 -7.22 15 12 C 0.53 8.95 7.93 34.13 0.27 9.22 15 13 O -0.50 -9.67 16.65 -19.34 -0.32 -9.99 15 14 C -0.04 -0.48 7.02 -82.43 -0.58 -1.06 15 15 C -0.06 -0.63 10.56 -39.01 -0.41 -1.04 15 16 C -0.30 -2.93 6.13 -105.11 -0.64 -3.57 15 17 C 0.42 3.70 11.70 34.11 0.40 4.10 15 18 O -0.48 -5.95 17.72 5.52 0.10 -5.85 15 19 C 0.11 0.99 11.73 -16.42 -0.19 0.79 15 20 N -0.51 -5.26 6.00 -9.26 -0.06 -5.32 15 21 H 0.43 3.77 8.96 -40.82 -0.37 3.40 15 22 H 0.26 7.15 8.31 -40.82 -0.34 6.81 15 23 H 0.03 0.74 8.14 -51.93 -0.42 0.31 15 24 H 0.03 0.74 8.14 -51.93 -0.42 0.32 15 25 H 0.06 1.31 8.14 -51.93 -0.42 0.89 15 26 H 0.06 1.31 8.14 -51.93 -0.42 0.89 15 27 H 0.16 1.53 8.06 -52.49 -0.42 1.11 15 28 H 0.10 0.55 8.06 -52.49 -0.42 0.13 15 29 H 0.19 1.19 8.06 -52.49 -0.42 0.77 15 LS Contribution 276.90 15.07 4.17 4.17 Total: -1.00 -32.69 276.90 -5.19 -37.88 By element: Atomic # 1 Polarization: 0.72 SS G_CDS: -2.87 Total: -2.14 kcal Atomic # 6 Polarization: -0.93 SS G_CDS: -1.52 Total: -2.44 kcal Atomic # 7 Polarization: -31.07 SS G_CDS: 0.68 Total: -30.39 kcal Atomic # 8 Polarization: -22.42 SS G_CDS: -0.64 Total: -23.06 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -32.69 -5.19 -37.88 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815254691.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.734 kcal (2) G-P(sol) polarization free energy of solvation -32.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds