Wall clock time and date at job start Sun Mar 29 2020 22:19:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 119.99669 * 2 1 4 4 H 1.48508 * 109.47141 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47162 * 299.99685 * 3 2 1 6 6 H 1.48501 * 109.47494 * 59.99663 * 3 2 1 7 7 C 1.37874 * 119.99835 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99766 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.46866 * 179.97438 * 9 7 2 11 11 O 1.45200 * 109.47003 * 179.97438 * 10 9 7 12 12 C 1.34867 * 117.00274 * 180.02562 * 11 10 9 13 13 O 1.21601 * 119.99560 * 359.97438 * 12 11 10 14 14 C 1.46662 * 119.99948 * 180.02562 * 12 11 10 15 15 C 1.36343 * 125.80856 * 179.71855 * 14 12 11 16 16 C 1.41521 * 106.97357 * 179.84769 * 15 14 12 17 17 C 1.46625 * 126.50523 * 180.15389 * 16 15 14 18 18 O 1.21327 * 119.99842 * 180.27748 * 17 16 15 19 19 C 1.38651 * 106.98469 * 0.40859 * 16 15 14 20 20 N 1.34084 * 108.36317 * 359.74432 * 19 16 15 21 21 H 0.96999 * 125.34852 * 180.02562 * 20 19 16 22 22 H 0.96992 * 120.00038 * 0.02562 * 1 2 3 23 23 H 1.09000 * 109.47247 * 59.99949 * 9 7 2 24 24 H 1.09001 * 109.47358 * 299.99375 * 9 7 2 25 25 H 1.08993 * 109.46955 * 300.00219 * 10 9 7 26 26 H 1.09000 * 109.47050 * 60.00048 * 10 9 7 27 27 H 1.07995 * 126.50884 * 359.97438 * 15 14 12 28 28 H 1.08000 * 120.00271 * 0.27560 * 17 16 15 29 29 H 1.07997 * 125.81736 * 179.76798 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3465 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 8 1.5195 -4.9196 0.0011 12 6 2.2540 -6.0507 0.0018 13 8 3.4684 -5.9869 0.0013 14 6 1.5882 -7.3574 0.0018 15 6 2.2112 -8.5702 -0.0030 16 6 1.1960 -9.5562 0.0027 17 6 1.3914 -11.0093 0.0035 18 8 0.4309 -11.7506 0.0036 19 6 -0.0184 -8.8872 0.0014 20 7 0.2256 -7.5687 0.0010 21 1 -0.4502 -6.8729 0.0005 22 1 -0.4850 0.8400 -0.0004 23 1 0.6248 -2.5571 -0.8897 24 1 0.6241 -2.5568 0.8903 25 1 2.8721 -3.6042 -0.8894 26 1 2.8721 -3.6043 0.8905 27 1 3.2769 -8.7450 -0.0079 28 1 2.3904 -11.4199 0.0041 29 1 -0.9945 -9.3493 0.0012 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815254691.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:19:02 Heat of formation + Delta-G solvation = -111.908355 kcal Electronic energy + Delta-G solvation = -15427.609261 eV Core-core repulsion = 12508.606493 eV Total energy + Delta-G solvation = -2919.002768 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 237.083 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.59472 -40.99262 -39.37009 -37.71856 -35.48038 -32.71866 -32.39806 -30.79004 -27.26331 -25.43566 -24.56687 -22.86954 -21.44961 -20.77937 -19.78434 -18.66154 -17.84011 -17.63647 -16.93536 -16.50236 -16.20579 -15.81672 -15.64163 -15.00890 -14.60655 -14.50690 -14.42910 -14.35748 -13.32953 -13.19285 -13.08603 -12.65506 -12.61903 -12.04828 -11.63240 -11.54418 -11.42323 -10.73386 -10.64333 -10.27199 -9.55259 -8.30070 -6.42893 0.14320 0.46129 1.40027 1.40586 1.52340 1.59394 1.85286 2.01818 2.36233 2.38553 3.04931 3.54989 3.72818 4.00605 4.13309 4.19268 4.21305 4.46987 4.64701 4.68288 4.96912 5.17900 5.38108 5.42660 5.44379 5.58545 5.70199 6.03500 6.21645 6.60832 6.69583 6.71071 7.27215 8.82572 Molecular weight = 237.08amu Principal moments of inertia in cm(-1) A = 0.074816 B = 0.003837 C = 0.003659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 374.161333 B = 7296.187627 C = 7649.902260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.006 3.994 3 Si 0.973 3.027 4 H -0.262 1.262 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.550 4.550 8 H 0.066 0.934 9 C 0.031 3.969 10 C 0.093 3.907 11 O -0.367 6.367 12 C 0.527 3.473 13 O -0.532 6.532 14 C -0.075 4.075 15 C -0.037 4.037 16 C -0.308 4.308 17 C 0.427 3.573 18 O -0.519 6.519 19 C 0.129 3.871 20 N -0.509 5.509 21 H 0.438 0.562 22 H 0.268 0.732 23 H 0.008 0.992 24 H 0.008 0.992 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.176 0.824 28 H 0.146 0.854 29 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.287 -17.620 -0.008 17.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.193 4.193 3 Si 0.797 3.203 4 H -0.186 1.186 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.588 4.588 8 H 0.084 0.916 9 C -0.006 4.006 10 C 0.020 3.980 11 O -0.284 6.284 12 C 0.374 3.626 13 O -0.423 6.423 14 C -0.182 4.182 15 C -0.061 4.061 16 C -0.315 4.315 17 C 0.289 3.711 18 O -0.396 6.396 19 C -0.017 4.017 20 N -0.103 5.103 21 H 0.279 0.721 22 H 0.077 0.923 23 H 0.026 0.974 24 H 0.026 0.974 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.193 0.807 28 H 0.163 0.837 29 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 0.952 -17.624 -0.008 17.649 hybrid contribution 0.025 1.684 0.000 1.685 sum 0.978 -15.939 -0.009 15.969 Atomic orbital electron populations 1.70089 1.07765 1.28228 1.50461 1.25953 0.95856 1.03405 0.94077 0.85272 0.78944 0.78086 0.77985 1.18590 1.20103 1.20114 1.21406 0.93777 0.91196 1.52381 0.91623 1.18989 0.94338 0.90520 0.96756 1.23215 0.95087 0.78383 1.01318 1.86548 1.42324 1.15823 1.83681 1.20343 0.85449 0.84264 0.72565 1.90852 1.15162 1.87933 1.48329 1.18997 0.84164 0.91313 1.23766 1.21543 1.00761 0.88324 0.95514 1.21019 0.92556 0.97249 1.20705 1.23611 0.95039 0.85026 0.67382 1.90534 1.47611 1.62454 1.39035 1.23340 1.01530 0.81521 0.95290 1.41971 1.06768 1.08950 1.52563 0.72104 0.92343 0.97407 0.97401 0.91919 0.91934 0.80693 0.83749 0.76724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.39 13.29 21.45 0.28 -54.11 15 2 C 0.01 0.34 5.46 84.65 0.46 0.80 15 3 Si 0.97 42.92 29.54 68.60 2.03 44.95 15 4 H -0.26 -11.08 7.11 99.48 0.71 -10.37 15 5 H -0.28 -11.80 7.11 99.48 0.71 -11.09 15 6 H -0.28 -11.81 7.11 99.48 0.71 -11.10 15 7 C -0.55 -30.56 9.11 25.60 0.23 -30.33 15 8 H 0.07 3.50 7.74 -2.91 -0.02 3.48 15 9 C 0.03 1.62 5.35 29.85 0.16 1.78 15 10 C 0.09 4.05 5.42 71.98 0.39 4.44 15 11 O -0.37 -14.04 10.23 -57.81 -0.59 -14.63 15 12 C 0.53 17.97 7.93 70.02 0.56 18.52 15 13 O -0.53 -20.52 16.65 19.50 0.32 -20.19 15 14 C -0.07 -1.89 7.02 39.95 0.28 -1.61 15 15 C -0.04 -0.74 10.56 22.64 0.24 -0.50 15 16 C -0.31 -5.24 6.13 -20.18 -0.12 -5.36 15 17 C 0.43 6.25 11.70 70.01 0.82 7.07 15 18 O -0.52 -11.50 17.72 -3.17 -0.06 -11.55 15 19 C 0.13 2.01 11.73 84.45 0.99 3.00 15 20 N -0.51 -9.76 6.00 -183.20 -1.10 -10.86 15 21 H 0.44 7.26 8.96 -92.71 -0.83 6.43 15 22 H 0.27 14.64 8.31 -92.71 -0.77 13.87 15 23 H 0.01 0.42 8.14 -2.39 -0.02 0.40 15 24 H 0.01 0.42 8.14 -2.39 -0.02 0.40 15 25 H 0.06 2.70 8.14 -2.39 -0.02 2.68 15 26 H 0.06 2.69 8.14 -2.39 -0.02 2.67 15 27 H 0.18 2.92 8.06 -2.91 -0.02 2.89 15 28 H 0.15 0.94 8.06 -2.91 -0.02 0.91 15 29 H 0.22 2.04 8.06 -2.91 -0.02 2.02 15 Total: -1.00 -70.64 276.90 5.24 -65.40 By element: Atomic # 1 Polarization: 2.84 SS G_CDS: 0.35 Total: 3.19 kcal Atomic # 6 Polarization: -6.20 SS G_CDS: 4.01 Total: -2.19 kcal Atomic # 7 Polarization: -64.15 SS G_CDS: -0.81 Total: -64.96 kcal Atomic # 8 Polarization: -46.05 SS G_CDS: -0.32 Total: -46.38 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.95 kcal Total: -70.64 5.24 -65.40 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815254691.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.513 kcal (2) G-P(sol) polarization free energy of solvation -70.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds