Wall clock time and date at job start Sun Mar 29 2020 22:08:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52989 * 115.56568 * 2 1 4 4 N 1.46905 * 109.47297 * 34.31226 * 3 2 1 5 5 C 1.46896 * 111.00128 * 180.02562 * 4 3 2 6 6 C 1.50702 * 109.47261 * 179.97438 * 5 4 3 7 7 H 1.08005 * 119.99379 * 359.97438 * 6 5 4 8 8 C 1.37874 * 120.00614 * 179.97438 * 6 5 4 9 9 N 1.31517 * 119.99436 * 359.97438 * 8 6 5 10 10 Si 1.86794 * 120.00384 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.46863 * 90.00083 * 10 8 6 12 12 H 1.48497 * 109.47316 * 209.99835 * 10 8 6 13 13 H 1.48496 * 109.47293 * 330.00198 * 10 8 6 14 14 C 1.53000 * 117.49463 * 145.69144 * 2 1 3 15 15 C 1.52997 * 60.00347 * 107.48750 * 14 2 1 16 16 Cl 1.80302 * 117.49615 * 252.51173 * 15 14 2 17 17 Cl 1.80299 * 117.50178 * 107.48433 * 15 14 2 18 18 H 1.09000 * 109.47691 * 205.68877 * 1 2 3 19 19 H 1.09000 * 109.46743 * 325.69107 * 1 2 3 20 20 H 1.08997 * 109.47164 * 85.68480 * 1 2 3 21 21 H 1.09003 * 109.47662 * 154.31268 * 3 2 1 22 22 H 1.09002 * 109.47378 * 274.30968 * 3 2 1 23 23 H 1.00893 * 110.99737 * 56.04262 * 4 3 2 24 24 H 1.09002 * 109.47077 * 299.99869 * 5 4 3 25 25 H 1.08998 * 109.47781 * 59.99873 * 5 4 3 26 26 H 0.96995 * 119.99834 * 180.02562 * 9 8 6 27 27 H 1.09002 * 117.49696 * 214.97963 * 14 2 1 28 28 H 1.09002 * 117.50343 * 359.97438 * 14 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1902 1.3801 0.0000 4 7 1.3695 2.3156 0.7807 5 6 1.9737 3.6543 0.8023 6 6 1.1055 4.5844 1.6100 7 1 0.1956 4.2176 2.0617 8 6 1.4727 5.9034 1.7723 9 7 2.5809 6.3498 1.2226 10 14 0.3961 7.0563 2.7728 11 1 0.8218 7.0215 4.1951 12 1 0.5317 8.4393 2.2493 13 1 -1.0210 6.6246 2.6697 14 6 2.2363 -1.1211 0.7650 15 6 2.2364 -1.1211 -0.7650 16 17 1.2021 -2.3409 -1.5974 17 17 3.7831 -0.7145 -1.5975 18 1 -0.3634 -0.9261 0.4455 19 1 -0.3633 0.8489 0.5793 20 1 -0.3633 0.0773 -1.0247 21 1 3.1825 1.3083 0.4454 22 1 2.2774 1.7412 -1.0248 23 1 1.2201 1.9708 1.7171 24 1 2.9646 3.5986 1.2531 25 1 2.0590 4.0311 -0.2169 26 1 2.8394 7.2776 1.3371 27 1 3.1714 -0.8753 1.2683 28 1 1.6111 -1.8583 1.2686 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000819346337.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:44 Heat of formation + Delta-G solvation = 4.394974 kcal Electronic energy + Delta-G solvation = -12715.216442 eV Core-core repulsion = 10239.533279 eV Total energy + Delta-G solvation = -2475.683162 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 237.038 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.76657 -36.05128 -35.96519 -34.47209 -32.25555 -28.55614 -27.26450 -24.44414 -22.38656 -21.42009 -19.07963 -16.73114 -15.97923 -15.20512 -14.69370 -14.36157 -13.83185 -13.30678 -12.87823 -12.61356 -12.38528 -12.01770 -11.63808 -11.46972 -11.30406 -11.19788 -11.09190 -10.82743 -10.74042 -10.64495 -10.07942 -9.88792 -9.58972 -9.19887 -8.51258 -7.39338 -6.05980 -4.08342 1.18156 2.22428 3.20503 3.30114 3.36567 3.40727 4.14263 4.32775 4.42022 4.98896 5.11644 5.30219 5.45675 5.47967 5.72967 5.88783 6.07474 6.16091 6.28026 6.58781 7.18648 7.36252 7.73344 8.07758 8.30643 8.52966 9.00466 9.56742 11.05132 Molecular weight = 237.04amu Principal moments of inertia in cm(-1) A = 0.047542 B = 0.005213 C = 0.004862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.812534 B = 5369.749853 C = 5757.103958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.071 4.071 3 C 0.091 3.909 4 N -0.682 5.682 5 C 0.194 3.806 6 C -0.515 4.515 7 H 0.063 0.937 8 C 0.056 3.944 9 N -0.897 5.897 10 Si 0.899 3.101 11 H -0.281 1.281 12 H -0.287 1.287 13 H -0.273 1.273 14 C -0.146 4.146 15 C 0.002 3.998 16 Cl -0.104 7.104 17 Cl -0.099 7.099 18 H 0.052 0.948 19 H 0.097 0.903 20 H 0.065 0.935 21 H 0.030 0.970 22 H 0.078 0.922 23 H 0.330 0.670 24 H -0.013 1.013 25 H 0.029 0.971 26 H 0.262 0.738 27 H 0.117 0.883 28 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.765 -15.913 -2.515 16.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.073 4.073 3 C -0.039 4.039 4 N -0.313 5.313 5 C 0.068 3.932 6 C -0.554 4.554 7 H 0.081 0.919 8 C -0.146 4.146 9 N -0.536 5.536 10 Si 0.727 3.273 11 H -0.207 1.207 12 H -0.212 1.212 13 H -0.197 1.197 14 C -0.183 4.183 15 C -0.050 4.050 16 Cl -0.077 7.077 17 Cl -0.072 7.072 18 H 0.071 0.929 19 H 0.116 0.884 20 H 0.084 0.916 21 H 0.048 0.952 22 H 0.096 0.904 23 H 0.146 0.854 24 H 0.005 0.995 25 H 0.047 0.953 26 H 0.071 0.929 27 H 0.135 0.865 28 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -1.029 -15.647 -3.214 16.007 hybrid contribution 0.507 0.374 0.838 1.048 sum -0.522 -15.273 -2.376 15.466 Atomic orbital electron populations 1.21398 0.89425 1.03050 1.03348 1.22594 0.97286 0.91315 0.96114 1.21475 0.93550 0.88420 1.00438 1.60690 1.48770 1.03636 1.18178 1.19566 0.92961 0.83237 0.97464 1.21157 1.08073 0.94298 1.31824 0.91881 1.24991 0.95311 0.98248 0.96023 1.69962 1.23173 1.15967 1.44546 0.86476 0.80835 0.79956 0.80008 1.20738 1.21247 1.19742 1.24216 1.03994 1.01292 0.88839 1.27116 0.87623 0.98861 0.91397 1.98721 1.68517 1.58873 1.81562 1.98741 1.33504 1.93517 1.81444 0.92856 0.88407 0.91603 0.95218 0.90409 0.85355 0.99473 0.95270 0.92868 0.86500 0.86457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.49 8.78 37.16 0.33 -1.17 15 2 C -0.07 -0.96 2.51 -154.51 -0.39 -1.35 15 3 C 0.09 1.54 4.87 -3.83 -0.02 1.52 15 4 N -0.68 -13.68 5.01 -115.06 -0.58 -14.26 15 5 C 0.19 4.94 5.44 -4.98 -0.03 4.91 15 6 C -0.51 -14.23 9.32 -34.44 -0.32 -14.56 15 7 H 0.06 1.70 7.81 -52.48 -0.41 1.29 15 8 C 0.06 1.57 5.46 -17.82 -0.10 1.48 15 9 N -0.90 -26.55 13.29 55.43 0.74 -25.82 15 10 Si 0.90 21.38 29.54 -169.99 -5.02 16.36 15 11 H -0.28 -6.57 7.11 56.52 0.40 -6.17 15 12 H -0.29 -6.78 7.11 56.52 0.40 -6.38 15 13 H -0.27 -6.36 7.11 56.52 0.40 -5.96 15 14 C -0.15 -1.63 9.50 -26.73 -0.25 -1.89 15 15 C 0.00 0.02 3.61 -26.73 -0.10 -0.07 15 16 Cl -0.10 -1.25 28.32 -51.86 -1.47 -2.72 15 17 Cl -0.10 -1.34 28.32 -51.86 -1.47 -2.80 15 18 H 0.05 0.59 7.90 -51.93 -0.41 0.18 15 19 H 0.10 1.42 6.69 -51.93 -0.35 1.07 15 20 H 0.07 0.87 8.14 -51.93 -0.42 0.45 15 21 H 0.03 0.51 7.90 -51.93 -0.41 0.10 15 22 H 0.08 1.41 8.14 -51.93 -0.42 0.99 15 23 H 0.33 6.23 8.61 -39.30 -0.34 5.89 15 24 H -0.01 -0.34 8.14 -51.93 -0.42 -0.76 15 25 H 0.03 0.81 8.14 -51.93 -0.42 0.39 15 26 H 0.26 7.31 8.31 -40.82 -0.34 6.98 15 27 H 0.12 1.26 8.05 -51.93 -0.42 0.84 15 28 H 0.12 1.11 8.05 -51.93 -0.42 0.69 15 LS Contribution 271.16 15.07 4.09 4.09 Total: -1.00 -28.54 271.16 -8.17 -36.70 By element: Atomic # 1 Polarization: 3.16 SS G_CDS: -3.58 Total: -0.42 kcal Atomic # 6 Polarization: -10.25 SS G_CDS: -0.88 Total: -11.12 kcal Atomic # 7 Polarization: -40.23 SS G_CDS: 0.16 Total: -40.07 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 17 Polarization: -2.59 SS G_CDS: -2.94 Total: -5.53 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -28.54 -8.17 -36.70 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819346337.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.095 kcal (2) G-P(sol) polarization free energy of solvation -28.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.700 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds