Wall clock time and date at job start Sun Mar 29 2020 22:08:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52989 * 115.56568 * 2 1 4 4 N 1.46905 * 109.47297 * 34.31226 * 3 2 1 5 5 C 1.46896 * 111.00128 * 180.02562 * 4 3 2 6 6 C 1.50702 * 109.47261 * 179.97438 * 5 4 3 7 7 H 1.08005 * 119.99379 * 359.97438 * 6 5 4 8 8 C 1.37874 * 120.00614 * 179.97438 * 6 5 4 9 9 N 1.31517 * 119.99436 * 359.97438 * 8 6 5 10 10 Si 1.86794 * 120.00384 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.46863 * 90.00083 * 10 8 6 12 12 H 1.48497 * 109.47316 * 209.99835 * 10 8 6 13 13 H 1.48496 * 109.47293 * 330.00198 * 10 8 6 14 14 C 1.53000 * 117.49463 * 145.69144 * 2 1 3 15 15 C 1.52997 * 60.00347 * 107.48750 * 14 2 1 16 16 Cl 1.80302 * 117.49615 * 252.51173 * 15 14 2 17 17 Cl 1.80299 * 117.50178 * 107.48433 * 15 14 2 18 18 H 1.09000 * 109.47691 * 205.68877 * 1 2 3 19 19 H 1.09000 * 109.46743 * 325.69107 * 1 2 3 20 20 H 1.08997 * 109.47164 * 85.68480 * 1 2 3 21 21 H 1.09003 * 109.47662 * 154.31268 * 3 2 1 22 22 H 1.09002 * 109.47378 * 274.30968 * 3 2 1 23 23 H 1.00893 * 110.99737 * 56.04262 * 4 3 2 24 24 H 1.09002 * 109.47077 * 299.99869 * 5 4 3 25 25 H 1.08998 * 109.47781 * 59.99873 * 5 4 3 26 26 H 0.96995 * 119.99834 * 180.02562 * 9 8 6 27 27 H 1.09002 * 117.49696 * 214.97963 * 14 2 1 28 28 H 1.09002 * 117.50343 * 359.97438 * 14 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1902 1.3801 0.0000 4 7 1.3695 2.3156 0.7807 5 6 1.9737 3.6543 0.8023 6 6 1.1055 4.5844 1.6100 7 1 0.1956 4.2176 2.0617 8 6 1.4727 5.9034 1.7723 9 7 2.5809 6.3498 1.2226 10 14 0.3961 7.0563 2.7728 11 1 0.8218 7.0215 4.1951 12 1 0.5317 8.4393 2.2493 13 1 -1.0210 6.6246 2.6697 14 6 2.2363 -1.1211 0.7650 15 6 2.2364 -1.1211 -0.7650 16 17 1.2021 -2.3409 -1.5974 17 17 3.7831 -0.7145 -1.5975 18 1 -0.3634 -0.9261 0.4455 19 1 -0.3633 0.8489 0.5793 20 1 -0.3633 0.0773 -1.0247 21 1 3.1825 1.3083 0.4454 22 1 2.2774 1.7412 -1.0248 23 1 1.2201 1.9708 1.7171 24 1 2.9646 3.5986 1.2531 25 1 2.0590 4.0311 -0.2169 26 1 2.8394 7.2776 1.3371 27 1 3.1714 -0.8753 1.2683 28 1 1.6111 -1.8583 1.2686 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000819346337.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:43 Heat of formation + Delta-G solvation = -12.562422 kcal Electronic energy + Delta-G solvation = -12715.951769 eV Core-core repulsion = 10239.533279 eV Total energy + Delta-G solvation = -2476.418490 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 237.038 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.88225 -37.22581 -37.01111 -36.08577 -34.24097 -29.90041 -28.85167 -26.15332 -23.63438 -23.10327 -20.27020 -18.56329 -17.35439 -16.77697 -16.15813 -16.01937 -15.18194 -14.63672 -14.28033 -14.02601 -13.80417 -13.55440 -13.06769 -12.75564 -12.68272 -12.62475 -12.41391 -12.30061 -12.18839 -11.96432 -11.82344 -11.32546 -11.02065 -10.64377 -10.59738 -9.13475 -8.20916 -6.31860 0.17680 1.20555 1.43521 1.45087 1.56711 2.18151 2.41951 3.05724 3.13182 3.32937 3.70523 3.90627 4.16829 4.58496 4.62880 4.67306 4.86942 5.00660 5.08049 5.12013 5.26498 5.52039 5.62862 6.02403 6.42079 6.71824 6.90786 7.39252 8.90809 Molecular weight = 237.04amu Principal moments of inertia in cm(-1) A = 0.047542 B = 0.005213 C = 0.004862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.812534 B = 5369.749853 C = 5757.103958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.084 4.084 3 C 0.096 3.904 4 N -0.675 5.675 5 C 0.208 3.792 6 C -0.532 4.532 7 H 0.069 0.931 8 C 0.000 4.000 9 N -0.936 5.936 10 Si 0.973 3.027 11 H -0.271 1.271 12 H -0.285 1.285 13 H -0.263 1.263 14 C -0.122 4.122 15 C 0.000 4.000 16 Cl -0.094 7.094 17 Cl -0.111 7.111 18 H 0.077 0.923 19 H 0.081 0.919 20 H 0.059 0.941 21 H 0.028 0.972 22 H 0.059 0.941 23 H 0.340 0.660 24 H -0.038 1.038 25 H -0.002 1.002 26 H 0.264 0.736 27 H 0.124 0.876 28 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.863 -17.022 -1.460 17.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.086 4.086 3 C -0.033 4.033 4 N -0.305 5.305 5 C 0.081 3.919 6 C -0.570 4.570 7 H 0.087 0.913 8 C -0.198 4.198 9 N -0.576 5.576 10 Si 0.797 3.203 11 H -0.197 1.197 12 H -0.211 1.211 13 H -0.187 1.187 14 C -0.160 4.160 15 C -0.052 4.052 16 Cl -0.067 7.067 17 Cl -0.084 7.084 18 H 0.096 0.904 19 H 0.099 0.901 20 H 0.078 0.922 21 H 0.046 0.954 22 H 0.077 0.923 23 H 0.158 0.842 24 H -0.020 1.020 25 H 0.016 0.984 26 H 0.073 0.927 27 H 0.142 0.858 28 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -2.136 -16.790 -2.158 17.062 hybrid contribution 0.864 0.659 0.456 1.179 sum -1.271 -16.131 -1.701 16.270 Atomic orbital electron populations 1.21339 0.88816 1.03567 1.02929 1.22367 0.97607 0.89854 0.98744 1.21372 0.93492 0.89783 0.98687 1.60514 1.48749 1.02184 1.19099 1.19197 0.91857 0.85923 0.94964 1.21544 1.08448 0.95062 1.31990 0.91276 1.25958 0.96630 1.00125 0.97104 1.70098 1.25015 1.16507 1.45976 0.85327 0.79150 0.77319 0.78474 1.19679 1.21070 1.18689 1.24374 1.04085 0.99730 0.87779 1.27146 0.87073 0.98535 0.92455 1.98726 1.68204 1.58222 1.81572 1.98744 1.34194 1.93666 1.81783 0.90428 0.90060 0.92195 0.95373 0.92266 0.84230 1.02011 0.98426 0.92700 0.85796 0.83740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.64 8.78 71.98 0.63 -2.01 15 2 C -0.08 -2.14 2.51 -52.18 -0.13 -2.27 15 3 C 0.10 3.27 4.87 86.30 0.42 3.69 15 4 N -0.67 -27.21 5.01 -517.94 -2.59 -29.81 15 5 C 0.21 10.91 5.44 85.56 0.47 11.38 15 6 C -0.53 -29.61 9.32 25.60 0.24 -29.37 15 7 H 0.07 3.68 7.81 -2.91 -0.02 3.66 15 8 C 0.00 -0.01 5.46 84.65 0.46 0.46 15 9 N -0.94 -56.26 13.29 21.45 0.28 -55.98 15 10 Si 0.97 43.59 29.54 68.60 2.03 45.62 15 11 H -0.27 -11.67 7.11 99.48 0.71 -10.97 15 12 H -0.28 -12.61 7.11 99.48 0.71 -11.90 15 13 H -0.26 -11.26 7.11 99.48 0.71 -10.56 15 14 C -0.12 -2.39 9.50 30.59 0.29 -2.10 15 15 C 0.00 -0.01 3.61 30.60 0.11 0.10 15 16 Cl -0.09 -2.07 28.32 -2.72 -0.08 -2.15 15 17 Cl -0.11 -2.90 28.32 -2.72 -0.08 -2.98 15 18 H 0.08 1.48 7.90 -2.39 -0.02 1.46 15 19 H 0.08 2.25 6.69 -2.39 -0.02 2.23 15 20 H 0.06 1.50 8.14 -2.39 -0.02 1.48 15 21 H 0.03 0.97 7.90 -2.39 -0.02 0.95 15 22 H 0.06 2.21 8.14 -2.39 -0.02 2.19 15 23 H 0.34 12.64 8.61 -89.70 -0.77 11.86 15 24 H -0.04 -2.13 8.14 -2.39 -0.02 -2.15 15 25 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 15 26 H 0.26 14.94 8.31 -92.71 -0.77 14.17 15 27 H 0.12 2.32 8.05 -2.39 -0.02 2.30 15 28 H 0.14 2.10 8.05 -2.39 -0.02 2.08 15 Total: -1.00 -61.21 271.16 2.44 -58.78 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: 0.39 Total: 6.64 kcal Atomic # 6 Polarization: -22.62 SS G_CDS: 2.49 Total: -20.13 kcal Atomic # 7 Polarization: -83.48 SS G_CDS: -2.31 Total: -85.79 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Atomic # 17 Polarization: -4.97 SS G_CDS: -0.15 Total: -5.12 kcal Total: -61.21 2.44 -58.78 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819346337.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.216 kcal (2) G-P(sol) polarization free energy of solvation -61.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds