Wall clock time and date at job start Sun Mar 29 2020 22:09:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36933 * 119.99641 * 2 1 4 4 H 1.08006 * 119.99588 * 202.34520 * 3 2 1 5 5 C 1.38813 * 120.00555 * 22.34561 * 3 2 1 6 6 N 1.31616 * 119.99455 * 11.35488 * 5 3 2 7 7 Si 1.86791 * 120.00104 * 191.35253 * 5 3 2 8 8 H 1.48500 * 109.47471 * 0.02562 * 7 5 3 9 9 H 1.48504 * 109.46856 * 120.00251 * 7 5 3 10 10 H 1.48496 * 109.47323 * 239.99792 * 7 5 3 11 11 C 1.46500 * 119.99822 * 180.02562 * 2 1 3 12 12 C 1.53000 * 109.46955 * 269.99411 * 11 2 1 13 13 C 1.53001 * 109.47284 * 180.02562 * 12 11 2 14 14 H 1.08995 * 115.54466 * 29.32959 * 13 12 11 15 15 C 1.52999 * 117.49930 * 175.00200 * 13 12 11 16 16 C 1.52997 * 117.49812 * 243.62494 * 13 12 11 17 17 Cl 1.80303 * 117.50129 * 359.97438 * 16 13 12 18 18 Cl 1.80302 * 117.49696 * 145.01873 * 16 13 12 19 19 H 1.09001 * 109.46629 * 274.20584 * 1 2 3 20 20 H 1.08999 * 109.47445 * 34.20748 * 1 2 3 21 21 H 1.09001 * 109.47112 * 154.20810 * 1 2 3 22 22 H 0.97003 * 119.99918 * 180.02562 * 6 5 3 23 23 H 1.08996 * 109.47033 * 149.99967 * 11 2 1 24 24 H 1.09000 * 109.47366 * 29.99460 * 11 2 1 25 25 H 1.09005 * 109.46810 * 60.00362 * 12 11 2 26 26 H 1.08997 * 109.47368 * 300.00670 * 12 11 2 27 27 H 1.08995 * 117.49596 * 214.97875 * 15 13 12 28 28 H 1.08993 * 117.50023 * 359.97438 * 15 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1689 1.2210 -0.3556 5 6 1.5338 2.3430 0.4570 6 7 0.3843 2.2690 1.0937 7 14 2.3365 4.0047 0.1685 8 1 3.6136 3.8168 -0.5657 9 1 1.4265 4.8614 -0.6335 10 1 2.6073 4.6572 1.4747 11 6 2.1975 -1.2688 -0.0006 12 6 2.4526 -1.7110 1.4417 13 6 3.2181 -3.0357 1.4412 14 1 3.8704 -3.2013 0.5839 15 6 3.6739 -3.5888 2.7930 16 6 2.5188 -4.2559 2.0436 17 17 0.8559 -4.0227 2.7003 18 17 2.8366 -5.8584 1.2807 19 1 -0.3632 0.0754 1.0249 20 1 -0.3634 0.8499 -0.5777 21 1 -0.3633 -0.9253 -0.4471 22 1 -0.0463 3.0776 1.4128 23 1 3.1499 -1.1382 -0.5143 24 1 1.6084 -2.0282 -0.5146 25 1 1.5001 -1.8415 1.9556 26 1 3.0416 -0.9515 1.9559 27 1 4.6259 -4.1186 2.8248 28 1 3.4287 -3.0087 3.6826 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000822602501.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:21 Heat of formation + Delta-G solvation = 28.303419 kcal Electronic energy + Delta-G solvation = -12904.306486 eV Core-core repulsion = 10429.660072 eV Total energy + Delta-G solvation = -2474.646414 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 237.038 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.15747 -36.00313 -35.82560 -35.04574 -31.62465 -29.04092 -25.82294 -23.90742 -22.23716 -20.74409 -20.10080 -16.73962 -16.26294 -15.17588 -14.64094 -13.95971 -13.44564 -13.08598 -12.96008 -12.41549 -12.05702 -11.81520 -11.35214 -11.21117 -11.10169 -10.91873 -10.81989 -10.65240 -10.45498 -10.16571 -9.98566 -9.80761 -9.75002 -9.49343 -8.52268 -6.72513 -5.69237 -3.14899 1.26752 2.31197 3.33905 3.38842 3.46011 3.47893 4.29639 4.46611 4.54973 5.18673 5.40377 5.47621 5.54295 5.74678 5.99817 6.10854 6.40156 6.50145 6.81893 6.84999 7.07407 7.44245 7.78118 7.84818 8.43536 9.27577 9.91331 10.40589 11.35861 Molecular weight = 237.04amu Principal moments of inertia in cm(-1) A = 0.044058 B = 0.005905 C = 0.005677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.373128 B = 4740.890791 C = 4930.658062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.164 3.836 2 N -0.603 5.603 3 C -0.252 4.252 4 H 0.069 0.931 5 C 0.000 4.000 6 N -0.908 5.908 7 Si 0.903 3.097 8 H -0.278 1.278 9 H -0.290 1.290 10 H -0.291 1.291 11 C 0.157 3.843 12 C -0.124 4.124 13 C -0.099 4.099 14 H 0.124 0.876 15 C -0.149 4.149 16 C -0.003 4.003 17 Cl -0.090 7.090 18 Cl -0.112 7.112 19 H 0.027 0.973 20 H 0.043 0.957 21 H -0.004 1.004 22 H 0.251 0.749 23 H 0.043 0.957 24 H 0.037 0.963 25 H 0.075 0.925 26 H 0.078 0.922 27 H 0.114 0.886 28 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.932 -13.049 2.381 14.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.325 5.325 3 C -0.382 4.382 4 H 0.086 0.914 5 C -0.198 4.198 6 N -0.554 5.554 7 Si 0.734 3.266 8 H -0.204 1.204 9 H -0.217 1.217 10 H -0.218 1.218 11 C 0.029 3.971 12 C -0.165 4.165 13 C -0.119 4.119 14 H 0.142 0.858 15 C -0.187 4.187 16 C -0.054 4.054 17 Cl -0.063 7.063 18 Cl -0.085 7.085 19 H 0.046 0.954 20 H 0.062 0.938 21 H 0.015 0.985 22 H 0.061 0.939 23 H 0.061 0.939 24 H 0.056 0.944 25 H 0.094 0.906 26 H 0.096 0.904 27 H 0.132 0.868 28 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 4.690 -13.010 2.409 14.037 hybrid contribution 0.218 0.713 0.084 0.751 sum 4.908 -12.296 2.494 13.472 Atomic orbital electron populations 1.20788 0.82519 0.95504 0.99220 1.43977 1.01964 1.00683 1.85894 1.19266 0.97934 0.85461 1.35548 0.91350 1.25026 0.97714 0.98478 0.98561 1.70084 1.17874 1.26848 1.40562 0.86199 0.78644 0.84416 0.77375 1.20356 1.21692 1.21794 1.20782 0.95726 0.88136 0.92432 1.22244 0.99844 0.91240 1.03125 1.23517 0.98601 0.92860 0.96906 0.85813 1.23999 0.95844 1.00659 0.98167 1.26987 0.85594 0.86407 1.06407 1.98742 1.25194 1.95999 1.86384 1.98723 1.94876 1.31870 1.83057 0.95445 0.93781 0.98527 0.93872 0.93896 0.94442 0.90637 0.90361 0.86777 0.86394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.13 9.01 59.85 0.54 4.67 15 2 N -0.60 -15.19 2.93 -181.11 -0.53 -15.72 15 3 C -0.25 -6.90 9.67 -15.06 -0.15 -7.04 15 4 H 0.07 1.82 7.84 -52.48 -0.41 1.41 15 5 C 0.00 0.01 5.13 -17.43 -0.09 -0.08 15 6 N -0.91 -26.54 10.59 55.49 0.59 -25.95 15 7 Si 0.90 21.80 29.57 -169.99 -5.03 16.78 15 8 H -0.28 -6.53 7.11 56.52 0.40 -6.13 15 9 H -0.29 -7.06 7.11 56.52 0.40 -6.66 15 10 H -0.29 -7.07 7.11 56.52 0.40 -6.67 15 11 C 0.16 3.16 5.67 -4.04 -0.02 3.13 15 12 C -0.12 -2.20 5.74 -26.73 -0.15 -2.36 15 13 C -0.10 -1.34 5.58 -90.62 -0.51 -1.85 15 14 H 0.12 1.53 8.07 -51.93 -0.42 1.11 15 15 C -0.15 -1.70 9.93 -26.73 -0.27 -1.96 15 16 C 0.00 -0.04 3.62 -26.73 -0.10 -0.13 15 17 Cl -0.09 -1.33 27.27 -51.86 -1.41 -2.75 15 18 Cl -0.11 -1.40 29.29 -51.86 -1.52 -2.92 15 19 H 0.03 0.74 7.42 -51.93 -0.39 0.35 15 20 H 0.04 1.19 7.19 -51.93 -0.37 0.81 15 21 H 0.00 -0.09 7.84 -51.93 -0.41 -0.49 15 22 H 0.25 7.11 8.31 -40.82 -0.34 6.77 15 23 H 0.04 0.83 8.03 -51.93 -0.42 0.41 15 24 H 0.04 0.71 7.86 -51.93 -0.41 0.30 15 25 H 0.08 1.45 6.06 -51.93 -0.31 1.13 15 26 H 0.08 1.51 8.14 -51.93 -0.42 1.09 15 27 H 0.11 1.06 8.14 -51.93 -0.42 0.64 15 28 H 0.12 1.33 8.14 -51.93 -0.42 0.91 15 LS Contribution 268.35 15.07 4.04 4.04 Total: -1.00 -29.00 268.35 -8.14 -37.14 By element: Atomic # 1 Polarization: -1.46 SS G_CDS: -3.54 Total: -5.00 kcal Atomic # 6 Polarization: -4.88 SS G_CDS: -0.74 Total: -5.62 kcal Atomic # 7 Polarization: -41.73 SS G_CDS: 0.06 Total: -41.67 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.03 Total: 16.78 kcal Atomic # 17 Polarization: -2.73 SS G_CDS: -2.93 Total: -5.67 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -29.00 -8.14 -37.14 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822602501.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.440 kcal (2) G-P(sol) polarization free energy of solvation -28.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.136 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds