Wall clock time and date at job start Sun Mar 29 2020 22:09:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36933 * 119.99641 * 2 1 4 4 H 1.08006 * 119.99588 * 202.34520 * 3 2 1 5 5 C 1.38813 * 120.00555 * 22.34561 * 3 2 1 6 6 N 1.31616 * 119.99455 * 11.35488 * 5 3 2 7 7 Si 1.86791 * 120.00104 * 191.35253 * 5 3 2 8 8 H 1.48500 * 109.47471 * 0.02562 * 7 5 3 9 9 H 1.48504 * 109.46856 * 120.00251 * 7 5 3 10 10 H 1.48496 * 109.47323 * 239.99792 * 7 5 3 11 11 C 1.46500 * 119.99822 * 180.02562 * 2 1 3 12 12 C 1.53000 * 109.46955 * 269.99411 * 11 2 1 13 13 C 1.53001 * 109.47284 * 180.02562 * 12 11 2 14 14 H 1.08995 * 115.54466 * 29.32959 * 13 12 11 15 15 C 1.52999 * 117.49930 * 175.00200 * 13 12 11 16 16 C 1.52997 * 117.49812 * 243.62494 * 13 12 11 17 17 Cl 1.80303 * 117.50129 * 359.97438 * 16 13 12 18 18 Cl 1.80302 * 117.49696 * 145.01873 * 16 13 12 19 19 H 1.09001 * 109.46629 * 274.20584 * 1 2 3 20 20 H 1.08999 * 109.47445 * 34.20748 * 1 2 3 21 21 H 1.09001 * 109.47112 * 154.20810 * 1 2 3 22 22 H 0.97003 * 119.99918 * 180.02562 * 6 5 3 23 23 H 1.08996 * 109.47033 * 149.99967 * 11 2 1 24 24 H 1.09000 * 109.47366 * 29.99460 * 11 2 1 25 25 H 1.09005 * 109.46810 * 60.00362 * 12 11 2 26 26 H 1.08997 * 109.47368 * 300.00670 * 12 11 2 27 27 H 1.08995 * 117.49596 * 214.97875 * 15 13 12 28 28 H 1.08993 * 117.50023 * 359.97438 * 15 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1689 1.2210 -0.3556 5 6 1.5338 2.3430 0.4570 6 7 0.3843 2.2690 1.0937 7 14 2.3365 4.0047 0.1685 8 1 3.6136 3.8168 -0.5657 9 1 1.4265 4.8614 -0.6335 10 1 2.6073 4.6572 1.4747 11 6 2.1975 -1.2688 -0.0006 12 6 2.4526 -1.7110 1.4417 13 6 3.2181 -3.0357 1.4412 14 1 3.8704 -3.2013 0.5839 15 6 3.6739 -3.5888 2.7930 16 6 2.5188 -4.2559 2.0436 17 17 0.8559 -4.0227 2.7003 18 17 2.8366 -5.8584 1.2807 19 1 -0.3632 0.0754 1.0249 20 1 -0.3634 0.8499 -0.5777 21 1 -0.3633 -0.9253 -0.4471 22 1 -0.0463 3.0776 1.4128 23 1 3.1499 -1.1382 -0.5143 24 1 1.6084 -2.0282 -0.5146 25 1 1.5001 -1.8415 1.9556 26 1 3.0416 -0.9515 1.9559 27 1 4.6259 -4.1186 2.8248 28 1 3.4287 -3.0087 3.6826 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000822602501.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:21 Heat of formation + Delta-G solvation = 13.018630 kcal Electronic energy + Delta-G solvation = -12904.969284 eV Core-core repulsion = 10429.660072 eV Total energy + Delta-G solvation = -2475.309212 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 237.038 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.29613 -37.52610 -36.96890 -36.37209 -33.53322 -30.73529 -27.89766 -25.62966 -23.21843 -22.45439 -21.41106 -18.72742 -17.41018 -16.82005 -16.18415 -15.57105 -15.24154 -14.63127 -14.45665 -13.67228 -13.50674 -13.25272 -12.84680 -12.79304 -12.62494 -12.46614 -12.38091 -12.12698 -11.99736 -11.93753 -11.75115 -11.37352 -11.14258 -10.64473 -10.60775 -8.76305 -7.79446 -5.27200 0.23573 1.26408 1.47852 1.49455 1.59527 2.31417 2.53750 3.23254 3.33364 3.46346 3.76779 4.23514 4.37797 4.50004 4.65975 4.78424 4.84210 4.93424 5.06265 5.29627 5.34828 5.53114 5.68291 5.75142 6.36713 7.18596 7.91194 8.35642 9.24761 Molecular weight = 237.04amu Principal moments of inertia in cm(-1) A = 0.044058 B = 0.005905 C = 0.005677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.373128 B = 4740.890791 C = 4930.658062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.179 3.821 2 N -0.621 5.621 3 C -0.258 4.258 4 H 0.075 0.925 5 C -0.056 4.056 6 N -0.941 5.941 7 Si 0.967 3.033 8 H -0.264 1.264 9 H -0.294 1.294 10 H -0.293 1.293 11 C 0.153 3.847 12 C -0.110 4.110 13 C -0.105 4.105 14 H 0.142 0.858 15 C -0.126 4.126 16 C -0.008 4.008 17 Cl -0.110 7.110 18 Cl -0.102 7.102 19 H 0.001 0.999 20 H 0.016 0.984 21 H 0.025 0.975 22 H 0.246 0.754 23 H 0.053 0.947 24 H 0.050 0.950 25 H 0.058 0.942 26 H 0.058 0.942 27 H 0.144 0.856 28 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.645 -14.049 2.144 15.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.344 5.344 3 C -0.388 4.388 4 H 0.092 0.908 5 C -0.250 4.250 6 N -0.588 5.588 7 Si 0.796 3.204 8 H -0.188 1.188 9 H -0.221 1.221 10 H -0.220 1.220 11 C 0.027 3.973 12 C -0.150 4.150 13 C -0.124 4.124 14 H 0.160 0.840 15 C -0.163 4.163 16 C -0.059 4.059 17 Cl -0.083 7.083 18 Cl -0.075 7.075 19 H 0.019 0.981 20 H 0.035 0.965 21 H 0.043 0.957 22 H 0.055 0.945 23 H 0.072 0.928 24 H 0.068 0.932 25 H 0.077 0.923 26 H 0.076 0.924 27 H 0.162 0.838 28 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 6.433 -14.047 2.164 15.601 hybrid contribution -0.290 0.926 0.115 0.977 sum 6.144 -13.121 2.279 14.666 Atomic orbital electron populations 1.20503 0.83076 0.95642 0.97352 1.44224 1.02053 1.01975 1.86116 1.19613 0.98137 0.86512 1.34513 0.90767 1.25783 0.98457 1.01826 0.98962 1.70254 1.19361 1.27217 1.42018 0.85191 0.78121 0.80126 0.76948 1.18837 1.22134 1.22042 1.20961 0.95801 0.86367 0.94146 1.21860 0.99380 0.93117 1.00649 1.23314 0.99035 0.90819 0.99256 0.84040 1.24141 0.96235 0.99197 0.96737 1.27061 0.85200 0.86668 1.07009 1.98744 1.26862 1.96104 1.86613 1.98728 1.94688 1.31101 1.82989 0.98082 0.96478 0.95700 0.94476 0.92826 0.93191 0.92315 0.92356 0.83762 0.86232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.13 9.01 127.77 1.15 10.28 15 2 N -0.62 -31.12 2.93 -726.92 -2.13 -33.25 15 3 C -0.26 -14.00 9.67 84.03 0.81 -13.19 15 4 H 0.07 3.87 7.84 -2.91 -0.02 3.85 15 5 C -0.06 -3.12 5.13 84.86 0.44 -2.68 15 6 N -0.94 -56.13 10.59 21.65 0.23 -55.90 15 7 Si 0.97 44.95 29.57 68.60 2.03 46.98 15 8 H -0.26 -11.51 7.11 99.48 0.71 -10.81 15 9 H -0.29 -13.77 7.11 99.48 0.71 -13.06 15 10 H -0.29 -13.64 7.11 99.48 0.71 -12.93 15 11 C 0.15 5.95 5.67 86.38 0.49 6.44 15 12 C -0.11 -3.78 5.74 30.59 0.18 -3.61 15 13 C -0.10 -2.58 5.58 -10.79 -0.06 -2.64 15 14 H 0.14 3.02 8.07 -2.39 -0.02 3.00 15 15 C -0.13 -2.48 9.93 30.59 0.30 -2.18 15 16 C -0.01 -0.20 3.62 30.59 0.11 -0.09 15 17 Cl -0.11 -3.15 27.27 -2.72 -0.07 -3.22 15 18 Cl -0.10 -2.28 29.29 -2.72 -0.08 -2.36 15 19 H 0.00 0.05 7.42 -2.39 -0.02 0.03 15 20 H 0.02 0.92 7.19 -2.39 -0.02 0.90 15 21 H 0.02 1.09 7.84 -2.39 -0.02 1.07 15 22 H 0.25 14.28 8.31 -92.71 -0.77 13.50 15 23 H 0.05 1.96 8.03 -2.39 -0.02 1.94 15 24 H 0.05 1.81 7.86 -2.39 -0.02 1.79 15 25 H 0.06 2.23 6.06 -2.38 -0.01 2.21 15 26 H 0.06 2.22 8.14 -2.39 -0.02 2.20 15 27 H 0.14 2.04 8.14 -2.39 -0.02 2.02 15 28 H 0.12 2.39 8.14 -2.39 -0.02 2.37 15 Total: -1.00 -61.85 268.35 4.54 -57.31 By element: Atomic # 1 Polarization: -3.04 SS G_CDS: 1.14 Total: -1.90 kcal Atomic # 6 Polarization: -11.08 SS G_CDS: 3.42 Total: -7.66 kcal Atomic # 7 Polarization: -87.26 SS G_CDS: -1.90 Total: -89.15 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Atomic # 17 Polarization: -5.43 SS G_CDS: -0.15 Total: -5.58 kcal Total: -61.85 4.54 -57.31 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822602501.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.331 kcal (2) G-P(sol) polarization free energy of solvation -61.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.312 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds