Wall clock time and date at job start Sun Mar 29 2020 22:10:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.36554 * 125.98478 * 144.11918 * 3 2 1 5 5 C 1.40475 * 106.70393 * 179.97438 * 4 3 2 6 6 C 1.35046 * 107.11194 * 359.97438 * 5 4 3 7 7 C 1.50701 * 125.61823 * 180.02562 * 6 5 4 8 8 S 1.81398 * 109.46845 * 89.99945 * 7 6 5 9 9 C 1.81404 * 103.00133 * 180.02562 * 8 7 6 10 10 C 1.52993 * 109.47273 * 180.02562 * 9 8 7 11 11 C 1.50706 * 109.46953 * 180.02562 * 10 9 8 12 12 H 1.07994 * 120.00296 * 359.97438 * 11 10 9 13 13 C 1.37880 * 119.99826 * 179.97438 * 11 10 9 14 14 N 1.31512 * 119.99757 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 119.99898 * 179.97438 * 13 11 10 16 16 H 1.48493 * 109.47179 * 59.99716 * 15 13 11 17 17 H 1.48497 * 109.47039 * 179.97438 * 15 13 11 18 18 H 1.48502 * 109.47089 * 299.99839 * 15 13 11 19 19 O 1.34056 * 108.76743 * 359.97438 * 6 5 4 20 20 H 1.07995 * 126.64402 * 0.23699 * 4 3 2 21 21 H 1.08001 * 126.44036 * 179.97438 * 5 4 3 22 22 H 1.08993 * 109.47244 * 209.99873 * 7 6 5 23 23 H 1.08997 * 109.46920 * 330.00427 * 7 6 5 24 24 H 1.09002 * 109.46797 * 300.00372 * 9 8 7 25 25 H 1.09002 * 109.47196 * 59.99575 * 9 8 7 26 26 H 1.09005 * 109.46532 * 299.99402 * 10 9 8 27 27 H 1.09002 * 109.47689 * 59.99470 * 10 9 8 28 28 H 0.97004 * 119.99359 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3700 0.8963 -0.6476 5 6 4.6961 0.5214 -0.3753 6 6 4.6455 -0.5715 0.4164 7 6 5.8368 -1.3183 0.9588 8 16 6.3132 -0.6145 2.5614 9 6 7.7387 -1.6271 3.0442 10 6 8.2662 -1.1520 4.3995 11 6 9.4509 -1.9928 4.8003 12 1 9.7931 -2.7869 4.1533 13 6 10.0979 -1.7482 5.9931 14 7 9.6815 -0.7809 6.7807 15 14 11.5659 -2.7909 6.4902 16 1 12.6353 -2.6593 5.4684 17 1 12.0787 -2.3289 7.8050 18 1 11.1510 -4.2132 6.5922 19 8 3.3609 -0.8820 0.6413 20 1 3.0472 1.7333 -1.2488 21 1 5.5883 1.0145 -0.7320 22 1 5.5795 -2.3698 1.0858 23 1 6.6695 -1.2297 0.2611 24 1 7.4342 -2.6710 3.1189 25 1 8.5238 -1.5305 2.2942 26 1 8.5706 -0.1079 4.3251 27 1 7.4810 -1.2489 5.1493 28 1 10.1365 -0.6091 7.6200 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871709142.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:14 Heat of formation + Delta-G solvation = 18.050324 kcal Electronic energy + Delta-G solvation = -12990.123259 eV Core-core repulsion = 10519.508793 eV Total energy + Delta-G solvation = -2470.614466 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 237.056 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -43.80440 -37.85870 -35.74404 -34.43898 -33.19883 -32.87289 -28.70008 -27.24422 -23.61254 -23.14285 -22.37082 -20.39135 -18.63996 -17.78233 -17.20803 -16.49329 -16.37746 -15.68150 -15.30607 -15.01183 -14.82439 -14.53053 -14.35010 -13.97403 -13.91901 -13.62585 -13.45598 -13.18255 -12.85621 -12.45693 -12.11309 -11.67241 -11.42742 -11.02558 -10.85597 -10.57347 -9.54584 -8.65446 -8.20473 -6.33883 -0.29525 0.63272 0.86723 1.43245 1.46901 1.50752 1.55386 1.77941 1.84816 2.16208 2.43069 2.88775 3.13233 3.61851 3.87436 4.12823 4.32787 4.38297 4.42032 4.55784 4.72923 4.91418 4.92839 5.36625 5.42134 5.53308 5.76813 5.85620 6.11953 6.13389 6.81111 7.35832 8.90853 Molecular weight = 237.06amu Principal moments of inertia in cm(-1) A = 0.068287 B = 0.003687 C = 0.003631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 409.937351 B = 7592.143731 C = 7710.444733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C 0.313 3.687 3 C 0.012 3.988 4 C -0.092 4.092 5 C -0.182 4.182 6 C 0.036 3.964 7 C -0.007 4.007 8 S -0.304 6.304 9 C -0.049 4.049 10 C 0.041 3.959 11 C -0.541 4.541 12 H 0.071 0.929 13 C 0.000 4.000 14 N -0.932 5.932 15 Si 0.971 3.029 16 H -0.263 1.263 17 H -0.286 1.286 18 H -0.266 1.266 19 O -0.171 6.171 20 H 0.198 0.802 21 H 0.191 0.809 22 H 0.110 0.890 23 H 0.147 0.853 24 H 0.079 0.921 25 H 0.088 0.912 26 H -0.002 1.002 27 H -0.007 1.007 28 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.328 1.012 -17.211 18.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.098 5.098 2 C -0.001 4.001 3 C -0.041 4.041 4 C -0.115 4.115 5 C -0.204 4.204 6 C -0.017 4.017 7 C -0.154 4.154 8 S -0.075 6.075 9 C -0.196 4.196 10 C 0.003 3.997 11 C -0.581 4.581 12 H 0.089 0.911 13 C -0.198 4.198 14 N -0.572 5.572 15 Si 0.795 3.205 16 H -0.188 1.188 17 H -0.212 1.212 18 H -0.191 1.191 19 O -0.067 6.067 20 H 0.215 0.785 21 H 0.208 0.792 22 H 0.129 0.871 23 H 0.164 0.836 24 H 0.098 0.902 25 H 0.107 0.893 26 H 0.017 0.983 27 H 0.011 0.989 28 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -9.582 1.652 -16.297 18.977 hybrid contribution 1.498 -1.265 0.252 1.977 sum -8.084 0.387 -16.045 17.971 Atomic orbital electron populations 1.81347 1.11483 1.07767 1.09193 1.23626 0.89720 0.93606 0.93193 1.16589 0.83993 0.96992 1.06547 1.22354 0.91135 0.99098 0.98864 1.21996 0.99561 0.96788 1.02056 1.22020 0.81384 0.98621 0.99682 1.21849 0.95143 1.01812 0.96562 1.87458 1.42671 1.51524 1.25858 1.23384 0.95063 0.99727 1.01463 1.18691 0.94856 0.95756 0.90387 1.21541 1.14007 1.17379 1.05132 0.91126 1.26024 1.00765 0.96571 0.96445 1.70113 1.42544 1.32211 1.12329 0.85410 0.78797 0.78842 0.77451 1.18778 1.21173 1.19080 1.84034 1.16791 1.47275 1.58612 0.78457 0.79197 0.87127 0.83552 0.90210 0.89340 0.98332 0.98856 0.92680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -10.60 18.54 19.00 0.35 -10.24 15 2 C 0.31 6.78 15.89 88.33 1.40 8.19 15 3 C 0.01 0.23 7.08 23.12 0.16 0.40 15 4 C -0.09 -1.26 10.84 22.42 0.24 -1.02 15 5 C -0.18 -2.73 10.77 22.08 0.24 -2.49 15 6 C 0.04 0.74 6.57 24.95 0.16 0.90 15 7 C -0.01 -0.15 6.47 71.24 0.46 0.31 15 8 S -0.30 -10.06 21.72 -56.49 -1.23 -11.28 15 9 C -0.05 -1.84 5.88 71.98 0.42 -1.42 15 10 C 0.04 2.13 4.98 29.85 0.15 2.28 15 11 C -0.54 -29.42 9.11 25.60 0.23 -29.18 15 12 H 0.07 3.56 7.74 -2.91 -0.02 3.54 15 13 C 0.00 0.02 5.46 84.66 0.46 0.48 15 14 N -0.93 -56.01 13.29 21.45 0.28 -55.72 15 15 Si 0.97 42.64 29.54 68.60 2.03 44.67 15 16 H -0.26 -10.94 7.11 99.48 0.71 -10.24 15 17 H -0.29 -12.46 7.11 99.48 0.71 -11.76 15 18 H -0.27 -11.17 7.11 99.48 0.71 -10.47 15 19 O -0.17 -3.99 10.67 -5.79 -0.06 -4.05 15 20 H 0.20 1.29 8.06 -2.91 -0.02 1.26 15 21 H 0.19 1.86 8.06 -2.91 -0.02 1.83 15 22 H 0.11 2.10 8.14 -2.39 -0.02 2.08 15 23 H 0.15 2.15 8.14 -2.39 -0.02 2.13 15 24 H 0.08 2.85 8.14 -2.39 -0.02 2.83 15 25 H 0.09 3.03 8.14 -2.39 -0.02 3.01 15 26 H 0.00 -0.10 8.14 -2.38 -0.02 -0.12 15 27 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 15 28 H 0.26 14.97 8.31 -92.71 -0.77 14.20 15 Total: -1.00 -66.78 279.13 6.48 -60.30 By element: Atomic # 1 Polarization: -3.28 SS G_CDS: 1.16 Total: -2.12 kcal Atomic # 6 Polarization: -25.49 SS G_CDS: 3.94 Total: -21.55 kcal Atomic # 7 Polarization: -66.60 SS G_CDS: 0.64 Total: -65.97 kcal Atomic # 8 Polarization: -3.99 SS G_CDS: -0.06 Total: -4.05 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.67 kcal Atomic # 16 Polarization: -10.06 SS G_CDS: -1.23 Total: -11.28 kcal Total: -66.78 6.48 -60.30 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871709142.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.347 kcal (2) G-P(sol) polarization free energy of solvation -66.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.297 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds