Wall clock time and date at job start Sun Mar 29 2020 21:36:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.29722 * 119.99762 * 2 1 4 4 N 1.40099 * 120.00335 * 0.02562 * 3 2 1 5 5 C 1.46491 * 120.00474 * 180.02562 * 4 3 2 6 6 H 1.09002 * 109.47256 * 29.99198 * 5 4 3 7 7 C 1.53000 * 109.46960 * 269.99594 * 5 4 3 8 8 C 1.50696 * 109.47628 * 149.99821 * 5 4 3 9 9 H 1.08001 * 119.99740 * 359.97438 * 8 5 4 10 10 C 1.37881 * 120.00357 * 179.97438 * 8 5 4 11 11 N 1.31513 * 119.99850 * 0.02562 * 10 8 5 12 12 Si 1.86790 * 120.00034 * 179.97438 * 10 8 5 13 13 H 1.48500 * 109.47397 * 60.00041 * 12 10 8 14 14 H 1.48506 * 109.47133 * 180.02562 * 12 10 8 15 15 H 1.48504 * 109.47276 * 300.00071 * 12 10 8 16 16 C 1.47533 * 120.00518 * 179.97438 * 2 1 3 17 17 C 1.36217 * 126.19935 * 180.02562 * 16 2 1 18 18 N 1.36707 * 106.64162 * 179.97438 * 17 16 2 19 19 C 1.46506 * 126.25907 * 179.97438 * 18 17 16 20 20 C 1.35126 * 107.47602 * 0.26220 * 18 17 16 21 21 N 1.30318 * 109.08582 * 359.55762 * 20 18 17 22 22 H 1.08998 * 109.47400 * 270.00041 * 1 2 3 23 23 H 1.09000 * 109.47442 * 30.00021 * 1 2 3 24 24 H 1.09006 * 109.46765 * 150.00108 * 1 2 3 25 25 H 0.97006 * 119.99779 * 359.97438 * 4 3 2 26 26 H 1.08999 * 109.47424 * 300.00278 * 7 5 4 27 27 H 1.09007 * 109.47165 * 59.99770 * 7 5 4 28 28 H 1.09004 * 109.47494 * 179.97438 * 7 5 4 29 29 H 0.97001 * 120.00558 * 179.97438 * 11 10 8 30 30 H 1.08002 * 126.67477 * 0.02562 * 17 16 2 31 31 H 1.09001 * 109.47060 * 90.00446 * 19 18 17 32 32 H 1.09004 * 109.47073 * 209.99934 * 19 18 17 33 33 H 1.09000 * 109.47212 * 330.00017 * 19 18 17 34 34 H 1.08002 * 125.45443 * 179.70220 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1555 1.1235 0.0000 4 7 1.4550 2.3368 0.0005 5 6 2.1874 3.6055 0.0000 6 1 3.1395 3.4752 -0.5145 7 6 2.4434 4.0472 1.4423 8 6 1.3725 4.6557 -0.7098 9 1 0.4058 4.4032 -1.1199 10 6 1.8609 5.9389 -0.8357 11 7 3.0383 6.2462 -0.3367 12 14 0.8510 7.2405 -1.7161 13 1 -0.4466 7.4177 -1.0161 14 1 1.5935 8.5267 -1.7165 15 1 0.6036 6.8119 -3.1162 16 6 2.2447 -1.2776 0.0006 17 6 3.5989 -1.4246 0.0011 18 7 3.8468 -2.7690 0.0021 19 6 5.1657 -3.4069 0.0025 20 6 2.6529 -3.4018 -0.0038 21 7 1.6997 -2.5132 0.0013 22 1 -0.3634 0.0000 1.0276 23 1 -0.3634 0.8900 -0.5138 24 1 -0.3633 -0.8901 -0.5139 25 1 0.4850 2.3367 0.0005 26 1 1.4913 4.1774 1.9568 27 1 3.0329 3.2875 1.9558 28 1 2.9887 4.9910 1.4420 29 1 3.3822 7.1489 -0.4256 30 1 4.3337 -0.6330 0.0016 31 1 5.4929 -3.5644 1.0302 32 1 5.1052 -4.3667 -0.5107 33 1 5.8803 -2.7643 -0.5119 34 1 2.5114 -4.4725 -0.0092 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000872357328.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:15 Heat of formation + Delta-G solvation = 101.658170 kcal Electronic energy + Delta-G solvation = -16019.308701 eV Core-core repulsion = 13375.411380 eV Total energy + Delta-G solvation = -2643.897321 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.133 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.75534 -36.83485 -34.52241 -33.63489 -31.54629 -29.31412 -28.62140 -26.88625 -26.31460 -25.12611 -22.11093 -20.91039 -20.14381 -18.68473 -17.32100 -16.21126 -15.62726 -15.23183 -14.95902 -14.08959 -13.87608 -13.63097 -13.52579 -12.93423 -12.80074 -12.72820 -12.43095 -11.93428 -11.45178 -11.23432 -10.99193 -10.77638 -10.35849 -10.17878 -10.14087 -9.94259 -9.46960 -9.25191 -8.93606 -8.51903 -8.34505 -6.57167 -6.08703 -4.16622 2.02687 2.68179 2.85249 3.29112 3.33313 3.35508 3.87877 3.94107 4.40304 4.58207 4.80193 4.94525 5.09697 5.19171 5.23426 5.34683 5.76643 5.89838 6.10540 6.22273 6.28649 6.50242 6.79734 6.93442 7.07164 7.17486 7.23129 7.31257 7.63827 7.84716 7.93859 8.18972 8.28813 8.40859 8.92375 9.48532 9.51304 10.96946 Molecular weight = 236.13amu Principal moments of inertia in cm(-1) A = 0.042562 B = 0.004715 C = 0.004467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.707131 B = 5937.573558 C = 6266.593435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.066 3.934 3 N -0.206 5.206 4 N -0.626 5.626 5 C 0.299 3.701 6 H 0.040 0.960 7 C -0.149 4.149 8 C -0.529 4.529 9 H 0.059 0.941 10 C 0.067 3.933 11 N -0.887 5.887 12 Si 0.902 3.098 13 H -0.276 1.276 14 H -0.286 1.286 15 H -0.276 1.276 16 C 0.078 3.922 17 C -0.030 4.030 18 N -0.469 5.469 19 C 0.075 3.925 20 C 0.175 3.825 21 N -0.482 5.482 22 H 0.062 0.938 23 H 0.058 0.942 24 H 0.072 0.928 25 H 0.370 0.630 26 H 0.025 0.975 27 H 0.012 0.988 28 H 0.088 0.912 29 H 0.264 0.736 30 H 0.181 0.819 31 H 0.074 0.926 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.793 -16.869 1.112 17.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.124 4.124 3 N -0.020 5.020 4 N -0.364 5.364 5 C 0.196 3.804 6 H 0.058 0.942 7 C -0.209 4.209 8 C -0.568 4.568 9 H 0.077 0.923 10 C -0.136 4.136 11 N -0.525 5.525 12 Si 0.730 3.270 13 H -0.202 1.202 14 H -0.211 1.211 15 H -0.202 1.202 16 C -0.051 4.051 17 C -0.165 4.165 18 N -0.153 5.153 19 C -0.068 4.068 20 C -0.108 4.108 21 N -0.202 5.202 22 H 0.081 0.919 23 H 0.077 0.923 24 H 0.091 0.909 25 H 0.207 0.793 26 H 0.044 0.956 27 H 0.031 0.969 28 H 0.107 0.893 29 H 0.074 0.926 30 H 0.198 0.802 31 H 0.093 0.907 32 H 0.103 0.897 33 H 0.104 0.896 34 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 3.233 -16.325 1.135 16.680 hybrid contribution -0.752 0.628 -0.413 1.063 sum 2.481 -15.697 0.721 15.908 Atomic orbital electron populations 1.20812 0.93009 1.02443 1.01859 1.21136 0.92353 0.88758 1.10196 1.73924 1.28349 0.93030 1.06729 1.48918 1.06117 0.99968 1.81357 1.18474 0.92680 0.76432 0.92796 0.94235 1.22201 0.99159 1.01638 0.97876 1.21225 1.04503 0.94427 1.36648 0.92296 1.24847 0.95125 0.98192 0.95445 1.69883 1.17418 1.20328 1.44889 0.86499 0.80016 0.80424 0.80109 1.20175 1.21132 1.20203 1.18337 0.89198 0.90169 1.07351 1.22870 0.98439 0.84546 1.10674 1.45303 1.07878 1.06779 1.55348 1.22002 0.82310 0.99036 1.03407 1.24832 0.79404 0.99496 1.07078 1.70258 1.31354 0.98936 1.19668 0.91942 0.92295 0.90868 0.79262 0.95584 0.96928 0.89299 0.92599 0.80218 0.90701 0.89667 0.89642 0.78088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.09 9.43 36.00 0.34 -1.75 16 2 C 0.07 1.27 7.13 -79.70 -0.57 0.70 16 3 N -0.21 -4.50 11.22 35.12 0.39 -4.11 16 4 N -0.63 -14.55 5.95 -5.89 -0.04 -14.58 16 5 C 0.30 7.82 3.23 -69.09 -0.22 7.59 16 6 H 0.04 1.14 8.14 -51.93 -0.42 0.72 16 7 C -0.15 -3.77 9.29 37.16 0.35 -3.42 16 8 C -0.53 -14.51 8.74 -34.44 -0.30 -14.81 16 9 H 0.06 1.58 7.79 -52.49 -0.41 1.18 16 10 C 0.07 1.82 5.30 -17.82 -0.09 1.73 16 11 N -0.89 -24.99 11.32 55.43 0.63 -24.37 16 12 Si 0.90 21.07 29.54 -169.99 -5.02 16.05 16 13 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 14 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 15 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 16 C 0.08 1.37 6.89 -83.39 -0.57 0.80 16 17 C -0.03 -0.45 11.29 -16.11 -0.18 -0.63 16 18 N -0.47 -5.36 3.15 -125.62 -0.40 -5.75 16 19 C 0.08 0.47 11.17 59.85 0.67 1.14 16 20 C 0.17 2.09 12.53 -90.45 -1.13 0.96 16 21 N -0.48 -7.77 10.97 -11.31 -0.12 -7.89 16 22 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 23 H 0.06 1.01 6.35 -51.93 -0.33 0.68 16 24 H 0.07 1.19 7.94 -51.93 -0.41 0.77 16 25 H 0.37 8.11 6.36 -182.59 -1.16 6.95 16 26 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.09 2.39 6.07 -51.93 -0.32 2.08 16 29 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 30 H 0.18 2.61 8.06 -52.49 -0.42 2.19 16 31 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.20 1.48 8.06 -52.49 -0.42 1.06 16 LS Contribution 294.39 15.07 4.44 4.44 Total: -1.00 -31.75 294.39 -7.41 -39.16 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: -5.57 Total: 4.75 kcal Atomic # 6 Polarization: -5.97 SS G_CDS: -1.72 Total: -7.69 kcal Atomic # 7 Polarization: -57.17 SS G_CDS: 0.47 Total: -56.70 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -31.75 -7.41 -39.16 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872357328.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.815 kcal (2) G-P(sol) polarization free energy of solvation -31.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.157 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds