Wall clock time and date at job start Sun Mar 29 2020 21:36:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.29722 * 119.99762 * 2 1 4 4 N 1.40099 * 120.00335 * 0.02562 * 3 2 1 5 5 C 1.46491 * 120.00474 * 180.02562 * 4 3 2 6 6 H 1.09002 * 109.47256 * 29.99198 * 5 4 3 7 7 C 1.53000 * 109.46960 * 269.99594 * 5 4 3 8 8 C 1.50696 * 109.47628 * 149.99821 * 5 4 3 9 9 H 1.08001 * 119.99740 * 359.97438 * 8 5 4 10 10 C 1.37881 * 120.00357 * 179.97438 * 8 5 4 11 11 N 1.31513 * 119.99850 * 0.02562 * 10 8 5 12 12 Si 1.86790 * 120.00034 * 179.97438 * 10 8 5 13 13 H 1.48500 * 109.47397 * 60.00041 * 12 10 8 14 14 H 1.48506 * 109.47133 * 180.02562 * 12 10 8 15 15 H 1.48504 * 109.47276 * 300.00071 * 12 10 8 16 16 C 1.47533 * 120.00518 * 179.97438 * 2 1 3 17 17 C 1.36217 * 126.19935 * 180.02562 * 16 2 1 18 18 N 1.36707 * 106.64162 * 179.97438 * 17 16 2 19 19 C 1.46506 * 126.25907 * 179.97438 * 18 17 16 20 20 C 1.35126 * 107.47602 * 0.26220 * 18 17 16 21 21 N 1.30318 * 109.08582 * 359.55762 * 20 18 17 22 22 H 1.08998 * 109.47400 * 270.00041 * 1 2 3 23 23 H 1.09000 * 109.47442 * 30.00021 * 1 2 3 24 24 H 1.09006 * 109.46765 * 150.00108 * 1 2 3 25 25 H 0.97006 * 119.99779 * 359.97438 * 4 3 2 26 26 H 1.08999 * 109.47424 * 300.00278 * 7 5 4 27 27 H 1.09007 * 109.47165 * 59.99770 * 7 5 4 28 28 H 1.09004 * 109.47494 * 179.97438 * 7 5 4 29 29 H 0.97001 * 120.00558 * 179.97438 * 11 10 8 30 30 H 1.08002 * 126.67477 * 0.02562 * 17 16 2 31 31 H 1.09001 * 109.47060 * 90.00446 * 19 18 17 32 32 H 1.09004 * 109.47073 * 209.99934 * 19 18 17 33 33 H 1.09000 * 109.47212 * 330.00017 * 19 18 17 34 34 H 1.08002 * 125.45443 * 179.70220 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1555 1.1235 0.0000 4 7 1.4550 2.3368 0.0005 5 6 2.1874 3.6055 0.0000 6 1 3.1395 3.4752 -0.5145 7 6 2.4434 4.0472 1.4423 8 6 1.3725 4.6557 -0.7098 9 1 0.4058 4.4032 -1.1199 10 6 1.8609 5.9389 -0.8357 11 7 3.0383 6.2462 -0.3367 12 14 0.8510 7.2405 -1.7161 13 1 -0.4466 7.4177 -1.0161 14 1 1.5935 8.5267 -1.7165 15 1 0.6036 6.8119 -3.1162 16 6 2.2447 -1.2776 0.0006 17 6 3.5989 -1.4246 0.0011 18 7 3.8468 -2.7690 0.0021 19 6 5.1657 -3.4069 0.0025 20 6 2.6529 -3.4018 -0.0038 21 7 1.6997 -2.5132 0.0013 22 1 -0.3634 0.0000 1.0276 23 1 -0.3634 0.8900 -0.5138 24 1 -0.3633 -0.8901 -0.5139 25 1 0.4850 2.3367 0.0005 26 1 1.4913 4.1774 1.9568 27 1 3.0329 3.2875 1.9558 28 1 2.9887 4.9910 1.4420 29 1 3.3822 7.1489 -0.4256 30 1 4.3337 -0.6330 0.0016 31 1 5.4929 -3.5644 1.0302 32 1 5.1052 -4.3667 -0.5107 33 1 5.8803 -2.7643 -0.5119 34 1 2.5114 -4.4725 -0.0092 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000872357328.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:15 Heat of formation + Delta-G solvation = 81.927053 kcal Electronic energy + Delta-G solvation = -16020.164307 eV Core-core repulsion = 13375.411380 eV Total energy + Delta-G solvation = -2644.752926 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.133 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.80919 -38.47215 -36.26270 -34.80916 -33.38133 -30.76086 -29.98570 -28.14478 -27.55500 -27.19646 -23.52337 -22.08805 -21.79045 -20.13627 -18.80378 -17.74964 -16.92113 -16.65355 -16.52435 -15.71465 -15.01422 -14.88862 -14.76279 -14.52142 -14.26864 -13.82917 -13.56601 -13.36127 -13.14654 -12.88564 -12.83600 -12.68793 -12.27782 -12.10497 -11.93411 -11.21245 -11.04075 -10.64882 -10.57113 -10.46411 -9.68387 -8.26614 -8.12017 -6.32476 0.75642 1.43793 1.45880 1.53001 1.53881 1.98880 2.23011 2.49717 2.61372 3.12858 3.71162 3.93917 4.14729 4.23143 4.39355 4.52591 4.55701 4.71464 4.78122 4.79519 4.92288 5.00289 5.15194 5.17431 5.24620 5.39573 5.57157 5.75751 5.84251 5.90456 6.21408 6.40880 6.46862 6.88441 7.13820 7.39028 7.85647 8.89194 Molecular weight = 236.13amu Principal moments of inertia in cm(-1) A = 0.042562 B = 0.004715 C = 0.004467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.707131 B = 5937.573558 C = 6266.593435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.090 3.910 3 N -0.248 5.248 4 N -0.641 5.641 5 C 0.308 3.692 6 H 0.001 0.999 7 C -0.134 4.134 8 C -0.549 4.549 9 H 0.059 0.941 10 C 0.020 3.980 11 N -0.914 5.914 12 Si 0.970 3.030 13 H -0.268 1.268 14 H -0.280 1.280 15 H -0.274 1.274 16 C 0.033 3.967 17 C -0.027 4.027 18 N -0.462 5.462 19 C 0.067 3.933 20 C 0.194 3.806 21 N -0.517 5.517 22 H 0.073 0.927 23 H 0.055 0.945 24 H 0.084 0.916 25 H 0.373 0.627 26 H 0.028 0.972 27 H 0.017 0.983 28 H 0.069 0.931 29 H 0.267 0.733 30 H 0.178 0.822 31 H 0.090 0.910 32 H 0.118 0.882 33 H 0.090 0.910 34 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.672 -18.961 0.873 19.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.101 4.101 3 N -0.060 5.060 4 N -0.380 5.380 5 C 0.204 3.796 6 H 0.019 0.981 7 C -0.194 4.194 8 C -0.588 4.588 9 H 0.077 0.923 10 C -0.180 4.180 11 N -0.552 5.552 12 Si 0.794 3.206 13 H -0.193 1.193 14 H -0.205 1.205 15 H -0.199 1.199 16 C -0.096 4.096 17 C -0.165 4.165 18 N -0.144 5.144 19 C -0.074 4.074 20 C -0.090 4.090 21 N -0.237 5.237 22 H 0.091 0.909 23 H 0.074 0.926 24 H 0.102 0.898 25 H 0.211 0.789 26 H 0.047 0.953 27 H 0.036 0.964 28 H 0.088 0.912 29 H 0.076 0.924 30 H 0.195 0.805 31 H 0.108 0.892 32 H 0.136 0.864 33 H 0.108 0.892 34 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges 3.132 -18.446 0.900 18.732 hybrid contribution -0.628 0.956 -0.329 1.190 sum 2.504 -17.490 0.571 17.678 Atomic orbital electron populations 1.20836 0.91728 1.02725 1.02594 1.21785 0.93741 0.89097 1.05452 1.73958 1.28571 0.93044 1.10428 1.48457 1.05825 0.99857 1.83814 1.18095 0.91165 0.77824 0.92468 0.98097 1.22012 0.98951 1.00675 0.97746 1.21501 1.04740 0.95283 1.37275 0.92309 1.25686 0.96156 1.00164 0.95983 1.70006 1.18732 1.20882 1.45583 0.85441 0.78642 0.77655 0.78838 1.19321 1.20486 1.19887 1.18356 0.90267 0.90155 1.10779 1.22886 0.97624 0.86474 1.09553 1.45585 1.09834 1.05374 1.53606 1.22412 0.79747 1.00167 1.05062 1.25769 0.78670 1.00895 1.03662 1.70192 1.33242 0.98739 1.21483 0.90883 0.92641 0.89758 0.78904 0.95301 0.96399 0.91202 0.92396 0.80514 0.89152 0.86362 0.89166 0.73272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.07 9.43 71.23 0.67 -3.40 16 2 C 0.09 3.53 7.13 45.32 0.32 3.86 16 3 N -0.25 -11.18 11.22 -42.81 -0.48 -11.66 16 4 N -0.64 -30.87 5.95 -172.54 -1.03 -31.90 16 5 C 0.31 16.80 3.23 44.25 0.14 16.94 16 6 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 7 C -0.13 -7.00 9.29 71.98 0.67 -6.33 16 8 C -0.55 -30.84 8.74 25.60 0.22 -30.61 16 9 H 0.06 3.22 7.79 -2.91 -0.02 3.20 16 10 C 0.02 1.13 5.30 84.66 0.45 1.58 16 11 N -0.91 -52.48 11.32 21.45 0.24 -52.24 16 12 Si 0.97 43.36 29.54 68.60 2.03 45.39 16 13 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 14 H -0.28 -12.13 7.11 99.48 0.71 -11.43 16 15 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 16 C 0.03 1.13 6.89 40.63 0.28 1.41 16 17 C -0.03 -0.79 11.29 83.46 0.94 0.15 16 18 N -0.46 -9.20 3.15 -551.34 -1.73 -10.94 16 19 C 0.07 0.58 11.17 127.77 1.43 2.00 16 20 C 0.19 3.97 12.53 180.29 2.26 6.23 16 21 N -0.52 -15.67 10.97 -189.70 -2.08 -17.75 16 22 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 23 H 0.05 1.92 6.35 -2.39 -0.02 1.91 16 24 H 0.08 2.67 7.94 -2.38 -0.02 2.65 16 25 H 0.37 16.86 6.36 -213.31 -1.36 15.51 16 26 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 27 H 0.02 0.85 8.14 -2.38 -0.02 0.83 16 28 H 0.07 3.88 6.07 -2.39 -0.01 3.87 16 29 H 0.27 14.45 8.31 -92.71 -0.77 13.68 16 30 H 0.18 5.18 8.06 -2.91 -0.02 5.16 16 31 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.12 0.31 8.14 -2.38 -0.02 0.29 16 33 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.25 2.33 8.06 -2.91 -0.02 2.30 16 Total: -1.00 -70.55 294.39 4.07 -66.48 By element: Atomic # 1 Polarization: 21.08 SS G_CDS: -0.26 Total: 20.82 kcal Atomic # 6 Polarization: -15.58 SS G_CDS: 7.39 Total: -8.19 kcal Atomic # 7 Polarization: -119.41 SS G_CDS: -5.08 Total: -124.49 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Total: -70.55 4.07 -66.48 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872357328.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.403 kcal (2) G-P(sol) polarization free energy of solvation -70.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.476 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds