Wall clock time and date at job start Sun Mar 29 2020 22:02:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.53006 * 109.47127 * 240.00501 * 2 1 3 5 5 C 1.50695 * 109.47196 * 64.99596 * 4 2 1 6 6 H 1.07999 * 120.00313 * 0.02562 * 5 4 2 7 7 C 1.37882 * 119.99880 * 179.97438 * 5 4 2 8 8 N 1.31508 * 120.00054 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99981 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47066 * 90.00098 * 9 7 5 11 11 H 1.48493 * 109.47265 * 210.00378 * 9 7 5 12 12 H 1.48503 * 109.47173 * 330.00700 * 9 7 5 13 13 C 1.52992 * 109.47482 * 120.00154 * 2 1 3 14 14 N 1.46898 * 109.47092 * 295.00148 * 13 2 1 15 15 C 1.46910 * 111.00101 * 179.97438 * 14 13 2 16 16 H 1.09003 * 109.47088 * 34.99378 * 15 14 13 17 17 C 1.53007 * 109.46843 * 275.00235 * 15 14 13 18 18 C 1.50691 * 109.47003 * 155.00027 * 15 14 13 19 19 C 1.34852 * 125.89571 * 34.69201 * 18 15 14 20 20 C 1.40887 * 107.41595 * 179.88327 * 19 18 15 21 21 C 1.34848 * 107.42375 * 0.37798 * 20 19 18 22 22 N 1.36346 * 108.21400 * 359.76845 * 21 20 19 23 23 H 0.97000 * 125.63803 * 179.97438 * 22 21 20 24 24 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 25 25 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 27 27 H 1.09007 * 109.47135 * 184.99942 * 4 2 1 28 28 H 1.08996 * 109.46945 * 304.99450 * 4 2 1 29 29 H 0.97003 * 120.00316 * 180.02562 * 8 7 5 30 30 H 1.09002 * 109.46906 * 55.00224 * 13 2 1 31 31 H 1.09006 * 109.47717 * 174.99599 * 13 2 1 32 32 H 1.00902 * 111.00133 * 56.04865 * 14 13 2 33 33 H 1.09003 * 109.46579 * 299.99455 * 17 15 14 34 34 H 1.08991 * 109.47181 * 59.99735 * 17 15 14 35 35 H 1.08998 * 109.46529 * 179.97438 * 17 15 14 36 36 H 1.08000 * 126.28706 * 0.02636 * 19 18 15 37 37 H 1.08005 * 126.28530 * 180.12503 * 20 19 18 38 38 H 1.07994 * 125.89514 * 179.72951 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 1.6413 0.0571 -2.4766 6 1 1.0806 0.9746 -2.3757 7 6 1.9932 -0.4015 -3.7284 8 7 2.6764 -1.5185 -3.8513 9 14 1.4996 0.5636 -5.2496 10 1 2.5651 1.5432 -5.5816 11 1 1.3129 -0.3700 -6.3892 12 1 0.2283 1.2850 -4.9873 13 6 2.0400 -0.7212 1.2491 14 7 1.6514 0.0374 2.4455 15 6 2.1249 -0.6272 3.6672 16 1 3.0884 -1.0989 3.4741 17 6 1.1122 -1.6920 4.0936 18 6 2.2757 0.3917 4.7671 19 6 1.4911 1.4718 4.9573 20 6 1.9763 2.1509 6.0924 21 6 3.0441 1.4646 6.5476 22 7 3.2328 0.3838 5.7382 23 1 3.9324 -0.2808 5.8367 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 -0.8900 27 1 3.1264 -0.7994 -1.2057 28 1 1.6055 -1.7197 -1.2953 29 1 2.9243 -1.8410 -4.7319 30 1 1.6055 -1.7198 1.2950 31 1 3.1264 -0.7995 1.2055 32 1 0.6529 0.1792 2.4753 33 1 0.1487 -1.2203 4.2867 34 1 1.0031 -2.4289 3.2980 35 1 1.4638 -2.1854 4.9997 36 1 0.6447 1.7616 4.3522 37 1 1.5703 3.0571 6.5171 38 1 3.6463 1.7263 7.4050 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877125218.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:20 Heat of formation + Delta-G solvation = 24.172302 kcal Electronic energy + Delta-G solvation = -16389.455905 eV Core-core repulsion = 13845.738888 eV Total energy + Delta-G solvation = -2543.717017 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.03319 -37.34997 -34.64009 -32.26638 -30.85932 -29.75697 -27.85431 -26.77840 -25.23912 -23.03077 -22.00953 -20.55780 -19.68499 -19.08460 -17.47390 -16.34527 -15.17744 -14.89455 -14.36955 -14.25389 -13.98794 -13.47663 -13.36604 -12.84791 -12.60487 -12.50602 -12.23841 -12.00994 -11.75815 -11.72577 -11.35183 -11.04272 -10.86316 -10.72111 -10.30898 -10.18561 -9.70171 -9.14097 -8.95285 -8.75367 -8.31012 -8.14304 -7.89555 -5.95872 -3.96772 2.33886 3.14556 3.30886 3.34932 3.41086 3.44519 4.46521 4.56756 4.86993 5.10196 5.19445 5.20153 5.40112 5.59461 5.60983 5.64810 5.78688 5.82257 5.88771 6.02689 6.10160 6.27239 6.35887 6.45456 6.49631 6.58549 6.94067 7.11364 7.13896 7.19373 7.22089 7.41753 7.64780 7.67454 7.72131 7.88215 8.04568 8.48704 9.09646 9.66610 11.15706 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.045952 B = 0.004190 C = 0.004102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.184169 B = 6681.677193 C = 6824.472169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.084 4.084 3 H 0.066 0.934 4 C 0.028 3.972 5 C -0.512 4.512 6 H 0.056 0.944 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.890 3.110 10 H -0.281 1.281 11 H -0.288 1.288 12 H -0.274 1.274 13 C 0.066 3.934 14 N -0.676 5.676 15 C 0.151 3.849 16 H 0.078 0.922 17 C -0.176 4.176 18 C 0.035 3.965 19 C -0.180 4.180 20 C -0.203 4.203 21 C -0.025 4.025 22 N -0.560 5.560 23 H 0.409 0.591 24 H 0.032 0.968 25 H 0.040 0.960 26 H 0.062 0.938 27 H 0.014 0.986 28 H 0.014 0.986 29 H 0.259 0.741 30 H 0.025 0.975 31 H 0.066 0.934 32 H 0.342 0.658 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.055 0.945 36 H 0.132 0.868 37 H 0.130 0.870 38 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.003 1.469 19.139 19.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.103 4.103 3 H 0.084 0.916 4 C -0.010 4.010 5 C -0.550 4.550 6 H 0.075 0.925 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.718 3.282 10 H -0.207 1.207 11 H -0.214 1.214 12 H -0.199 1.199 13 C -0.063 4.063 14 N -0.308 5.308 15 C 0.039 3.961 16 H 0.096 0.904 17 C -0.235 4.235 18 C -0.078 4.078 19 C -0.204 4.204 20 C -0.228 4.228 21 C -0.156 4.156 22 N -0.155 5.155 23 H 0.245 0.755 24 H 0.051 0.949 25 H 0.060 0.940 26 H 0.081 0.919 27 H 0.033 0.967 28 H 0.032 0.968 29 H 0.069 0.931 30 H 0.043 0.957 31 H 0.084 0.916 32 H 0.162 0.838 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.074 0.926 36 H 0.150 0.850 37 H 0.148 0.852 38 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -0.288 1.683 18.976 19.052 hybrid contribution -0.423 -0.542 -0.766 1.029 sum -0.711 1.141 18.210 18.260 Atomic orbital electron populations 1.21742 0.96636 1.00417 1.00346 1.21219 0.94908 1.00164 0.94005 0.91563 1.19111 0.96093 0.95360 0.90389 1.21247 1.34576 1.08241 0.90981 0.92530 1.25018 0.95357 0.95077 0.99098 1.69964 1.39179 1.21263 1.23353 0.86629 0.78952 0.79810 0.82826 1.20728 1.21354 1.19884 1.22182 1.00185 0.94555 0.89358 1.60474 1.20003 1.49954 1.00364 1.19790 0.98612 0.89781 0.87884 0.90376 1.22481 1.00061 0.99313 1.01624 1.20246 0.93372 1.00535 0.93645 1.20579 1.03141 0.96745 0.99945 1.20902 0.99638 1.02308 0.99978 1.21703 1.02634 0.91475 0.99759 1.41898 1.26197 1.23079 1.24334 0.75523 0.94882 0.94040 0.91858 0.96723 0.96757 0.93130 0.95663 0.91580 0.83769 0.91946 0.91926 0.92555 0.84965 0.85159 0.82394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.49 8.77 37.16 0.33 -2.17 16 2 C -0.08 -1.72 2.54 -90.62 -0.23 -1.95 16 3 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 4 C 0.03 0.72 4.45 -27.88 -0.12 0.59 16 5 C -0.51 -14.40 8.41 -34.44 -0.29 -14.69 16 6 H 0.06 1.55 7.06 -52.49 -0.37 1.18 16 7 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 8 N -0.90 -27.08 13.29 55.43 0.74 -26.35 16 9 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 10 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 12 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 13 C 0.07 1.12 4.94 -3.83 -0.02 1.11 16 14 N -0.68 -10.01 5.88 -107.95 -0.63 -10.64 16 15 C 0.15 1.90 3.10 -68.86 -0.21 1.69 16 16 H 0.08 0.98 7.80 -51.93 -0.41 0.57 16 17 C -0.18 -1.93 9.14 37.16 0.34 -1.59 16 18 C 0.04 0.45 6.22 -81.79 -0.51 -0.06 16 19 C -0.18 -2.41 10.34 -39.78 -0.41 -2.82 16 20 C -0.20 -2.45 10.86 -39.78 -0.43 -2.88 16 21 C -0.03 -0.26 11.94 -16.75 -0.20 -0.46 16 22 N -0.56 -5.91 6.08 -9.12 -0.06 -5.96 16 23 H 0.41 3.17 8.96 -40.82 -0.37 2.80 16 24 H 0.03 0.52 6.68 -51.93 -0.35 0.17 16 25 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.06 1.28 6.95 -51.93 -0.36 0.92 16 27 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 28 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 30 H 0.03 0.42 7.44 -51.93 -0.39 0.04 16 31 H 0.07 1.18 8.06 -51.93 -0.42 0.76 16 32 H 0.34 4.84 6.72 -39.29 -0.26 4.57 16 33 H 0.06 0.68 8.13 -51.93 -0.42 0.26 16 34 H 0.06 0.71 7.45 -51.93 -0.39 0.32 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.13 1.75 8.06 -52.49 -0.42 1.33 16 37 H 0.13 1.35 8.06 -52.48 -0.42 0.93 16 38 H 0.16 1.15 8.06 -52.49 -0.42 0.72 16 LS Contribution 310.71 15.07 4.68 4.68 Total: -1.00 -30.99 310.71 -8.40 -39.38 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: -6.24 Total: 3.85 kcal Atomic # 6 Polarization: -19.89 SS G_CDS: -1.86 Total: -21.75 kcal Atomic # 7 Polarization: -43.00 SS G_CDS: 0.05 Total: -42.95 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -30.99 -8.40 -39.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877125218.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.557 kcal (2) G-P(sol) polarization free energy of solvation -30.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.384 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds