Wall clock time and date at job start Sun Mar 29 2020 22:02:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.53006 * 109.47127 * 240.00501 * 2 1 3 5 5 C 1.50695 * 109.47196 * 64.99596 * 4 2 1 6 6 H 1.07999 * 120.00313 * 0.02562 * 5 4 2 7 7 C 1.37882 * 119.99880 * 179.97438 * 5 4 2 8 8 N 1.31508 * 120.00054 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99981 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47066 * 90.00098 * 9 7 5 11 11 H 1.48493 * 109.47265 * 210.00378 * 9 7 5 12 12 H 1.48503 * 109.47173 * 330.00700 * 9 7 5 13 13 C 1.52992 * 109.47482 * 120.00154 * 2 1 3 14 14 N 1.46898 * 109.47092 * 295.00148 * 13 2 1 15 15 C 1.46910 * 111.00101 * 179.97438 * 14 13 2 16 16 H 1.09003 * 109.47088 * 34.99378 * 15 14 13 17 17 C 1.53007 * 109.46843 * 275.00235 * 15 14 13 18 18 C 1.50691 * 109.47003 * 155.00027 * 15 14 13 19 19 C 1.34852 * 125.89571 * 34.69201 * 18 15 14 20 20 C 1.40887 * 107.41595 * 179.88327 * 19 18 15 21 21 C 1.34848 * 107.42375 * 0.37798 * 20 19 18 22 22 N 1.36346 * 108.21400 * 359.76845 * 21 20 19 23 23 H 0.97000 * 125.63803 * 179.97438 * 22 21 20 24 24 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 25 25 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 27 27 H 1.09007 * 109.47135 * 184.99942 * 4 2 1 28 28 H 1.08996 * 109.46945 * 304.99450 * 4 2 1 29 29 H 0.97003 * 120.00316 * 180.02562 * 8 7 5 30 30 H 1.09002 * 109.46906 * 55.00224 * 13 2 1 31 31 H 1.09006 * 109.47717 * 174.99599 * 13 2 1 32 32 H 1.00902 * 111.00133 * 56.04865 * 14 13 2 33 33 H 1.09003 * 109.46579 * 299.99455 * 17 15 14 34 34 H 1.08991 * 109.47181 * 59.99735 * 17 15 14 35 35 H 1.08998 * 109.46529 * 179.97438 * 17 15 14 36 36 H 1.08000 * 126.28706 * 0.02636 * 19 18 15 37 37 H 1.08005 * 126.28530 * 180.12503 * 20 19 18 38 38 H 1.07994 * 125.89514 * 179.72951 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 1.6413 0.0571 -2.4766 6 1 1.0806 0.9746 -2.3757 7 6 1.9932 -0.4015 -3.7284 8 7 2.6764 -1.5185 -3.8513 9 14 1.4996 0.5636 -5.2496 10 1 2.5651 1.5432 -5.5816 11 1 1.3129 -0.3700 -6.3892 12 1 0.2283 1.2850 -4.9873 13 6 2.0400 -0.7212 1.2491 14 7 1.6514 0.0374 2.4455 15 6 2.1249 -0.6272 3.6672 16 1 3.0884 -1.0989 3.4741 17 6 1.1122 -1.6920 4.0936 18 6 2.2757 0.3917 4.7671 19 6 1.4911 1.4718 4.9573 20 6 1.9763 2.1509 6.0924 21 6 3.0441 1.4646 6.5476 22 7 3.2328 0.3838 5.7382 23 1 3.9324 -0.2808 5.8367 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 -0.8900 27 1 3.1264 -0.7994 -1.2057 28 1 1.6055 -1.7197 -1.2953 29 1 2.9243 -1.8410 -4.7319 30 1 1.6055 -1.7198 1.2950 31 1 3.1264 -0.7995 1.2055 32 1 0.6529 0.1792 2.4753 33 1 0.1487 -1.2203 4.2867 34 1 1.0031 -2.4289 3.2980 35 1 1.4638 -2.1854 4.9997 36 1 0.6447 1.7616 4.3522 37 1 1.5703 3.0571 6.5171 38 1 3.6463 1.7263 7.4050 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000877125218.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:20 Heat of formation + Delta-G solvation = 4.776325 kcal Electronic energy + Delta-G solvation = -16390.296978 eV Core-core repulsion = 13845.738888 eV Total energy + Delta-G solvation = -2544.558090 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.91087 -38.69275 -36.21964 -34.24113 -31.74678 -31.09413 -28.79795 -28.60846 -26.77757 -24.59277 -23.33796 -21.44034 -20.71025 -20.61774 -18.66316 -18.26818 -16.64974 -16.42409 -15.84437 -15.44886 -15.02574 -14.71379 -14.44369 -14.38060 -14.03769 -13.67585 -13.49640 -13.26932 -13.15538 -12.93178 -12.83043 -12.68747 -12.55125 -12.24550 -11.98933 -11.87635 -11.48650 -11.05471 -10.93746 -10.52122 -9.64228 -9.33013 -8.80511 -8.16476 -6.25237 1.41113 1.41999 1.45900 1.52978 2.21874 2.42499 2.48218 3.17111 3.40775 3.93095 4.11295 4.19603 4.27732 4.35598 4.49577 4.51517 4.69805 4.72258 4.75065 4.86387 4.90931 4.98045 5.05913 5.18126 5.26469 5.39791 5.46511 5.50810 5.52666 5.58512 5.82067 5.91038 6.04137 6.23438 6.31695 6.38106 6.51432 6.88957 6.90767 7.42941 8.95575 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.045952 B = 0.004190 C = 0.004102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.184169 B = 6681.677193 C = 6824.472169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.076 4.076 3 H 0.053 0.947 4 C 0.033 3.967 5 C -0.529 4.529 6 H 0.060 0.940 7 C -0.002 4.002 8 N -0.935 5.935 9 Si 0.960 3.040 10 H -0.275 1.275 11 H -0.283 1.283 12 H -0.263 1.263 13 C 0.080 3.920 14 N -0.679 5.679 15 C 0.153 3.847 16 H 0.078 0.922 17 C -0.168 4.168 18 C 0.021 3.979 19 C -0.202 4.202 20 C -0.230 4.230 21 C -0.013 4.013 22 N -0.554 5.554 23 H 0.423 0.577 24 H 0.065 0.935 25 H 0.043 0.957 26 H 0.044 0.956 27 H -0.014 1.014 28 H -0.008 1.008 29 H 0.262 0.738 30 H 0.030 0.970 31 H 0.056 0.944 32 H 0.347 0.653 33 H 0.063 0.937 34 H 0.058 0.942 35 H 0.070 0.930 36 H 0.125 0.875 37 H 0.141 0.859 38 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.327 2.142 20.372 20.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.095 4.095 3 H 0.072 0.928 4 C -0.004 4.004 5 C -0.567 4.567 6 H 0.078 0.922 7 C -0.199 4.199 8 N -0.576 5.576 9 Si 0.785 3.215 10 H -0.200 1.200 11 H -0.209 1.209 12 H -0.187 1.187 13 C -0.049 4.049 14 N -0.312 5.312 15 C 0.042 3.958 16 H 0.096 0.904 17 C -0.227 4.227 18 C -0.093 4.093 19 C -0.227 4.227 20 C -0.254 4.254 21 C -0.144 4.144 22 N -0.150 5.150 23 H 0.261 0.739 24 H 0.084 0.916 25 H 0.062 0.938 26 H 0.063 0.937 27 H 0.004 0.996 28 H 0.010 0.990 29 H 0.070 0.930 30 H 0.048 0.952 31 H 0.074 0.926 32 H 0.168 0.832 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.089 0.911 36 H 0.143 0.857 37 H 0.159 0.841 38 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -0.612 2.353 20.230 20.376 hybrid contribution -0.284 -0.744 -1.078 1.340 sum -0.896 1.609 19.152 19.240 Atomic orbital electron populations 1.21646 0.94921 1.00767 1.01027 1.21011 0.96272 0.98907 0.93264 0.92816 1.19001 0.94175 0.94652 0.92606 1.21651 1.34417 1.08516 0.92130 0.92184 1.25932 0.95286 0.96076 1.02592 1.70094 1.40349 1.22934 1.24256 0.85521 0.79016 0.78388 0.78589 1.20040 1.20874 1.18719 1.21854 0.99420 0.94510 0.89082 1.60367 1.20427 1.49996 1.00378 1.19788 0.98991 0.90124 0.86907 0.90353 1.22397 0.99620 0.98649 1.02073 1.20181 0.94201 1.00577 0.94323 1.20738 1.03554 0.97611 1.00812 1.21177 1.00741 1.03327 1.00188 1.22256 1.01927 0.90366 0.99861 1.41940 1.25966 1.23442 1.23673 0.73929 0.91588 0.93832 0.93727 0.99579 0.98958 0.92959 0.95180 0.92572 0.83237 0.91831 0.92308 0.91108 0.85670 0.84108 0.78987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.61 8.77 71.98 0.63 -3.97 16 2 C -0.08 -3.11 2.54 -10.79 -0.03 -3.14 16 3 H 0.05 2.34 8.14 -2.39 -0.02 2.32 16 4 C 0.03 1.76 4.45 29.85 0.13 1.89 16 5 C -0.53 -30.19 8.41 25.60 0.22 -29.98 16 6 H 0.06 3.31 7.06 -2.91 -0.02 3.29 16 7 C 0.00 -0.10 5.46 84.66 0.46 0.36 16 8 N -0.94 -57.46 13.29 21.45 0.28 -57.17 16 9 Si 0.96 44.84 29.54 68.60 2.03 46.87 16 10 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 11 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 12 H -0.26 -11.72 7.11 99.48 0.71 -11.02 16 13 C 0.08 2.74 4.94 86.30 0.43 3.17 16 14 N -0.68 -19.46 5.88 -495.43 -2.91 -22.37 16 15 C 0.15 3.65 3.10 44.17 0.14 3.79 16 16 H 0.08 1.86 7.80 -2.39 -0.02 1.84 16 17 C -0.17 -3.40 9.14 71.98 0.66 -2.75 16 18 C 0.02 0.49 6.22 41.08 0.26 0.75 16 19 C -0.20 -5.23 10.34 22.14 0.23 -5.00 16 20 C -0.23 -5.17 10.86 22.14 0.24 -4.93 16 21 C -0.01 -0.24 11.94 83.21 0.99 0.76 16 22 N -0.55 -10.43 6.08 -182.77 -1.11 -11.54 16 23 H 0.42 5.48 8.96 -92.71 -0.83 4.65 16 24 H 0.07 1.96 6.68 -2.39 -0.02 1.94 16 25 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 26 H 0.04 1.78 6.95 -2.38 -0.02 1.76 16 27 H -0.01 -0.82 8.14 -2.38 -0.02 -0.84 16 28 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 29 H 0.26 15.13 8.31 -92.71 -0.77 14.35 16 30 H 0.03 1.00 7.44 -2.39 -0.02 0.98 16 31 H 0.06 2.02 8.06 -2.38 -0.02 2.00 16 32 H 0.35 9.32 6.72 -89.69 -0.60 8.71 16 33 H 0.06 1.27 8.13 -2.39 -0.02 1.25 16 34 H 0.06 1.23 7.45 -2.39 -0.02 1.22 16 35 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.13 3.28 8.06 -2.91 -0.02 3.25 16 37 H 0.14 2.72 8.06 -2.91 -0.02 2.69 16 38 H 0.19 2.05 8.06 -2.91 -0.02 2.02 16 Total: -1.00 -66.83 310.71 2.24 -64.59 By element: Atomic # 1 Polarization: 19.08 SS G_CDS: -0.40 Total: 18.68 kcal Atomic # 6 Polarization: -43.42 SS G_CDS: 4.35 Total: -39.06 kcal Atomic # 7 Polarization: -87.34 SS G_CDS: -3.74 Total: -91.08 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.87 kcal Total: -66.83 2.24 -64.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877125218.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.365 kcal (2) G-P(sol) polarization free energy of solvation -66.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.588 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds