Wall clock time and date at job start Sun Mar 29 2020 21:43:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.52999 * 109.46901 * 246.33717 * 3 2 1 5 5 N 1.46895 * 109.47311 * 179.54325 * 4 3 2 6 6 C 1.46902 * 111.00163 * 288.00586 * 5 4 3 7 7 C 1.50696 * 109.47568 * 160.35466 * 6 5 4 8 8 H 1.07997 * 119.99729 * 4.66207 * 7 6 5 9 9 C 1.37876 * 120.00120 * 184.65567 * 7 6 5 10 10 N 1.31507 * 120.00144 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 119.99843 * 180.02562 * 9 7 6 12 12 H 1.48493 * 109.47155 * 90.00424 * 11 9 7 13 13 H 1.48505 * 109.47035 * 210.00292 * 11 9 7 14 14 H 1.48500 * 109.47136 * 329.99794 * 11 9 7 15 15 C 1.46904 * 111.00434 * 164.05137 * 5 4 3 16 16 C 1.53001 * 109.46809 * 293.95637 * 15 5 4 17 17 C 1.53001 * 109.46921 * 179.97438 * 16 15 5 18 18 C 1.53001 * 109.46921 * 179.97438 * 17 16 15 19 19 C 1.53001 * 117.49559 * 243.74339 * 18 17 16 20 20 C 1.53004 * 117.49580 * 175.08799 * 18 17 16 21 21 H 1.08993 * 109.47557 * 126.33748 * 3 2 1 22 22 H 1.08998 * 109.47449 * 6.33237 * 3 2 1 23 23 H 1.09004 * 109.47511 * 59.53867 * 4 3 2 24 24 H 1.08998 * 109.47164 * 299.54475 * 4 3 2 25 25 H 1.09002 * 109.47425 * 280.35906 * 6 5 4 26 26 H 1.09009 * 109.47116 * 40.35249 * 6 5 4 27 27 H 0.97000 * 120.00623 * 180.02562 * 10 9 7 28 28 H 1.09000 * 109.46654 * 53.95552 * 15 5 4 29 29 H 1.08999 * 109.47234 * 173.95302 * 15 5 4 30 30 H 1.08996 * 109.46959 * 299.99394 * 16 15 5 31 31 H 1.08996 * 109.47007 * 59.99872 * 16 15 5 32 32 H 1.09005 * 109.47129 * 300.00110 * 17 16 15 33 33 H 1.08999 * 109.47102 * 59.99678 * 17 16 15 34 34 H 1.08992 * 115.55230 * 29.41724 * 18 17 16 35 35 H 1.09004 * 117.49886 * 0.02562 * 19 18 17 36 36 H 1.08997 * 117.49750 * 145.02031 * 19 18 17 37 37 H 1.08998 * 117.49486 * 214.97848 * 20 18 17 38 38 H 1.08996 * 117.49930 * 359.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1177 0.5798 1.3212 5 7 4.5866 0.5704 1.3258 6 6 5.1039 -0.7973 1.4662 7 6 6.5344 -0.8444 0.9944 8 1 7.0353 0.0653 0.6979 9 6 7.2035 -2.0487 0.9412 10 7 6.5933 -3.1564 1.3018 11 14 8.9769 -2.1068 0.3570 12 1 9.8864 -1.9361 1.5183 13 1 9.2419 -3.4165 -0.2910 14 1 9.2120 -1.0143 -0.6209 15 6 5.1155 1.4443 2.3816 16 6 4.7618 2.8987 2.0646 17 6 5.3121 3.8087 3.1646 18 6 4.9589 5.2632 2.8473 19 6 6.1154 6.2296 2.5840 20 6 5.3226 6.3221 3.8901 21 1 2.9711 0.6097 -0.8277 22 1 2.9719 -1.0205 -0.1133 23 1 2.7479 -0.0245 2.1496 24 1 2.7606 1.6038 1.4309 25 1 5.0565 -1.0981 2.5128 26 1 4.5005 -1.4775 0.8650 27 1 7.0641 -4.0037 1.2648 28 1 4.6764 1.1639 3.3390 29 1 6.1990 1.3368 2.4334 30 1 5.2009 3.1790 1.1072 31 1 3.6784 3.0061 2.0129 32 1 4.8727 3.5282 4.1219 33 1 6.3955 3.7013 3.2168 34 1 4.0404 5.4108 2.2793 35 1 7.1279 5.8292 2.6364 36 1 5.9576 7.0133 1.8430 37 1 4.6435 7.1665 4.0078 38 1 5.8130 5.9825 4.8023 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878308906.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:27 Heat of formation + Delta-G solvation = 34.413593 kcal Electronic energy + Delta-G solvation = -16183.166313 eV Core-core repulsion = 13639.893392 eV Total energy + Delta-G solvation = -2543.272921 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.07498 -37.27857 -36.09499 -32.96940 -32.49761 -30.46233 -27.29705 -25.37640 -23.26965 -22.44025 -21.64268 -20.35376 -19.70804 -17.21119 -16.51379 -15.66065 -15.27509 -14.72658 -14.60199 -14.41550 -13.73543 -13.72935 -13.35501 -12.71621 -12.33135 -12.23617 -12.06618 -11.74234 -11.58492 -11.46145 -11.30311 -11.09994 -10.89676 -10.78621 -10.69991 -10.43665 -10.16552 -10.12129 -9.84901 -9.57574 -9.26366 -8.45120 -7.36889 -6.05327 -4.06435 2.98472 3.03990 3.30489 3.37573 3.41236 3.77275 4.19341 4.43066 4.61185 4.89207 4.91816 5.10180 5.29616 5.31931 5.35087 5.47700 5.52400 5.56725 5.69412 5.80435 5.85796 5.95931 6.02989 6.06160 6.13844 6.16162 6.24467 6.33405 6.42884 6.66227 6.73762 7.15410 7.27667 7.77085 7.80345 8.03436 8.13055 8.47402 9.01353 9.58108 11.05189 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.012449 B = 0.007032 C = 0.004714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2248.559195 B = 3980.622997 C = 5938.246714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.462 5.462 2 C 0.221 3.779 3 C -0.028 4.028 4 C 0.058 3.942 5 N -0.534 5.534 6 C 0.187 3.813 7 C -0.504 4.504 8 H 0.064 0.936 9 C 0.056 3.944 10 N -0.899 5.899 11 Si 0.896 3.104 12 H -0.282 1.282 13 H -0.287 1.287 14 H -0.273 1.273 15 C 0.065 3.935 16 C -0.114 4.114 17 C -0.089 4.089 18 C -0.146 4.146 19 C -0.182 4.182 20 C -0.187 4.187 21 H 0.115 0.885 22 H 0.116 0.884 23 H 0.031 0.969 24 H 0.071 0.929 25 H -0.009 1.009 26 H 0.037 0.963 27 H 0.261 0.739 28 H 0.020 0.980 29 H 0.083 0.917 30 H 0.070 0.930 31 H 0.056 0.944 32 H 0.062 0.938 33 H 0.064 0.936 34 H 0.102 0.898 35 H 0.094 0.906 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.947 13.276 2.230 13.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.140 5.140 2 C -0.097 4.097 3 C -0.068 4.068 4 C -0.072 4.072 5 N -0.258 5.258 6 C 0.063 3.937 7 C -0.543 4.543 8 H 0.082 0.918 9 C -0.146 4.146 10 N -0.539 5.539 11 Si 0.724 3.276 12 H -0.208 1.208 13 H -0.213 1.213 14 H -0.197 1.197 15 C -0.063 4.063 16 C -0.152 4.152 17 C -0.127 4.127 18 C -0.165 4.165 19 C -0.219 4.219 20 C -0.224 4.224 21 H 0.133 0.867 22 H 0.134 0.866 23 H 0.049 0.951 24 H 0.089 0.911 25 H 0.009 0.991 26 H 0.055 0.945 27 H 0.071 0.929 28 H 0.038 0.962 29 H 0.101 0.899 30 H 0.089 0.911 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.083 0.917 34 H 0.120 0.880 35 H 0.113 0.887 36 H 0.108 0.892 37 H 0.107 0.893 38 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -3.450 13.245 1.788 13.804 hybrid contribution 1.155 -0.520 0.494 1.360 sum -2.295 12.725 2.282 13.130 Atomic orbital electron populations 1.81153 1.13287 1.10079 1.09464 1.29510 0.95519 0.92210 0.92418 1.19401 0.79921 1.05992 1.01510 1.21927 0.91238 0.99959 0.94105 1.62081 1.03489 1.13737 1.46499 1.19849 0.95940 0.82450 0.95505 1.21139 0.96500 0.93441 1.43192 0.91796 1.24971 0.98323 0.95616 0.95650 1.69940 1.37038 0.98382 1.48536 0.86535 0.84849 0.77373 0.78885 1.20839 1.21339 1.19742 1.21979 1.01358 0.91198 0.91780 1.21639 1.00210 0.94506 0.98807 1.21170 1.01081 0.91503 0.98959 1.22379 0.99305 0.92118 1.02649 1.23031 0.96877 1.02678 0.99299 1.22965 1.04142 1.01594 0.93747 0.86722 0.86580 0.95060 0.91110 0.99133 0.94546 0.92917 0.96220 0.89852 0.91098 0.92579 0.91974 0.91691 0.88024 0.88747 0.89211 0.89264 0.88967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -7.89 18.54 42.16 0.78 -7.10 16 2 C 0.22 3.30 15.43 -20.76 -0.32 2.98 16 3 C -0.03 -0.39 5.77 -29.52 -0.17 -0.56 16 4 C 0.06 0.89 4.79 -3.83 -0.02 0.87 16 5 N -0.53 -9.95 4.38 -236.07 -1.03 -10.98 16 6 C 0.19 4.39 4.59 -4.98 -0.02 4.37 16 7 C -0.50 -13.13 8.61 -34.44 -0.30 -13.43 16 8 H 0.06 1.66 7.66 -52.49 -0.40 1.26 16 9 C 0.06 1.50 5.46 -17.82 -0.10 1.40 16 10 N -0.90 -25.48 13.29 55.43 0.74 -24.75 16 11 Si 0.90 20.75 29.54 -169.99 -5.02 15.72 16 12 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 13 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 14 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 15 C 0.07 1.10 4.78 -3.82 -0.02 1.08 16 16 C -0.11 -1.54 5.14 -26.73 -0.14 -1.67 16 17 C -0.09 -1.06 5.50 -26.73 -0.15 -1.21 16 18 C -0.15 -1.56 5.73 -90.62 -0.52 -2.08 16 19 C -0.18 -1.80 10.18 -26.69 -0.27 -2.07 16 20 C -0.19 -1.78 10.25 -26.69 -0.27 -2.06 16 21 H 0.11 1.43 8.14 -51.93 -0.42 1.01 16 22 H 0.12 1.75 6.53 -51.93 -0.34 1.41 16 23 H 0.03 0.51 8.05 -51.93 -0.42 0.09 16 24 H 0.07 0.97 5.94 -51.93 -0.31 0.66 16 25 H -0.01 -0.23 8.00 -51.93 -0.42 -0.65 16 26 H 0.04 0.89 6.24 -51.92 -0.32 0.56 16 27 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 28 H 0.02 0.33 8.12 -51.93 -0.42 -0.09 16 29 H 0.08 1.57 7.32 -51.93 -0.38 1.19 16 30 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 31 H 0.06 0.71 6.28 -51.93 -0.33 0.39 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.06 0.79 7.87 -51.93 -0.41 0.38 16 34 H 0.10 1.06 8.07 -51.93 -0.42 0.64 16 35 H 0.09 0.94 8.03 -51.93 -0.42 0.52 16 36 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 37 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 318.58 15.07 4.80 4.80 Total: -1.00 -28.45 318.58 -8.28 -36.74 By element: Atomic # 1 Polarization: 4.20 SS G_CDS: -6.25 Total: -2.05 kcal Atomic # 6 Polarization: -10.08 SS G_CDS: -2.29 Total: -12.38 kcal Atomic # 7 Polarization: -43.32 SS G_CDS: 0.48 Total: -42.84 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -28.45 -8.28 -36.74 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878308906.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.149 kcal (2) G-P(sol) polarization free energy of solvation -28.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.735 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds