Wall clock time and date at job start Sun Mar 29 2020 21:59:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 C 1.52998 * 109.47061 * 297.35246 * 3 2 1 5 5 N 1.46902 * 109.47194 * 179.97438 * 4 3 2 6 6 C 1.46898 * 111.00286 * 169.99818 * 5 4 3 7 7 C 1.53237 * 109.34102 * 187.25655 * 6 5 4 8 8 H 1.09005 * 109.62838 * 186.46222 * 7 6 5 9 9 C 1.52993 * 109.79042 * 65.97617 * 7 6 5 10 10 N 1.47081 * 108.52131 * 306.17057 * 7 6 5 11 11 C 1.36932 * 120.87903 * 231.19288 * 10 7 6 12 12 H 1.08001 * 120.00170 * 151.02815 * 11 10 7 13 13 C 1.38813 * 120.00244 * 331.02025 * 11 10 7 14 14 N 1.31625 * 119.99909 * 343.80860 * 13 11 10 15 15 Si 1.86802 * 120.00153 * 163.80225 * 13 11 10 16 16 H 1.48498 * 109.46850 * 180.02562 * 15 13 11 17 17 H 1.48500 * 109.47259 * 300.00475 * 15 13 11 18 18 H 1.48503 * 109.46703 * 60.00587 * 15 13 11 19 19 C 1.47074 * 118.23750 * 51.45872 * 10 7 6 20 20 H 1.08998 * 109.63237 * 68.24728 * 19 10 7 21 21 C 1.53002 * 109.62973 * 188.83397 * 19 10 7 22 22 C 1.46901 * 111.00139 * 294.30286 * 5 4 3 23 23 H 4.44647 * 5.63328 * 179.97438 * 4 1 2 24 24 H 1.08993 * 109.47442 * 177.34916 * 3 2 1 25 25 H 1.08998 * 109.47142 * 57.34965 * 3 2 1 26 26 H 1.08998 * 109.47488 * 60.00242 * 4 3 2 27 27 H 1.08998 * 109.47438 * 299.99821 * 4 3 2 28 28 H 1.09003 * 109.49259 * 67.29409 * 6 5 4 29 29 H 1.09004 * 109.49125 * 307.21972 * 6 5 4 30 30 H 1.09001 * 109.47326 * 300.87168 * 9 7 6 31 31 H 1.08998 * 109.47301 * 60.87142 * 9 7 6 32 32 H 1.08998 * 109.47514 * 180.87144 * 9 7 6 33 33 H 0.97000 * 120.00124 * 175.07858 * 14 13 11 34 34 H 1.08998 * 109.46872 * 60.31451 * 21 19 10 35 35 H 1.09003 * 109.47011 * 180.31368 * 21 19 10 36 36 H 1.09000 * 109.46769 * 300.31586 * 21 19 10 37 37 H 1.09002 * 109.48971 * 292.70443 * 22 5 4 38 38 H 1.09006 * 109.49117 * 52.78751 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1562 -0.6619 1.2812 5 7 4.6253 -0.6618 1.2810 6 6 5.1520 -1.0705 2.5899 7 6 6.6729 -0.8841 2.6056 8 1 7.0823 -1.2918 3.5300 9 6 7.0135 0.6041 2.5052 10 7 7.2434 -1.6002 1.4545 11 6 8.2783 -2.4819 1.6179 12 1 8.3897 -3.3154 0.9402 13 6 9.1844 -2.3042 2.6544 14 7 9.2532 -1.1467 3.2772 15 14 10.3059 -3.7080 3.1655 16 1 11.1725 -3.2657 4.2873 17 1 9.4835 -4.8648 3.6021 18 1 11.1528 -4.1093 2.0135 19 6 6.6766 -1.3398 0.1226 20 1 6.9165 -0.3220 -0.1849 21 6 7.2545 -2.3352 -0.8855 22 6 5.1516 -1.5127 0.2054 23 1 -1.0499 0.0001 0.0002 24 1 3.0089 1.0273 -0.0475 25 1 3.0096 -0.5536 -0.8653 26 1 2.7934 -1.6886 1.3287 27 1 2.7927 -0.1077 2.1465 28 1 4.9122 -2.1190 2.7672 29 1 4.7022 -0.4571 3.3706 30 1 6.5972 1.0107 1.5836 31 1 6.5896 1.1322 3.3593 32 1 8.0962 0.7296 2.5013 33 1 9.8345 -1.0439 4.0469 34 1 6.9995 -3.3502 -0.5809 35 1 6.8371 -2.1364 -1.8726 36 1 8.3387 -2.2281 -0.9211 37 1 4.9118 -2.5550 0.4159 38 1 4.7016 -1.2199 -0.7433 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878772052.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:41 Heat of formation + Delta-G solvation = 80.662445 kcal Electronic energy + Delta-G solvation = -17502.956443 eV Core-core repulsion = 14961.689022 eV Total energy + Delta-G solvation = -2541.267420 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -38.62124 -35.62286 -33.55177 -32.48515 -31.33891 -29.25663 -27.63076 -26.15326 -24.62360 -23.48585 -21.19001 -20.65913 -18.55626 -18.04113 -16.20470 -15.35231 -15.12166 -14.78418 -14.02530 -13.87029 -13.66110 -13.49066 -13.04874 -12.57052 -12.18855 -11.88451 -11.61732 -11.50059 -11.12922 -10.87938 -10.81094 -10.57724 -10.50866 -10.42034 -10.20206 -10.00207 -9.97667 -9.84905 -9.42902 -9.12150 -8.41061 -7.75093 -6.56796 -5.69099 -3.16381 2.80596 2.85544 3.41099 3.47470 3.48319 4.21210 4.53982 4.70840 5.20652 5.34169 5.37635 5.45061 5.65303 5.82262 5.90084 5.99107 6.06937 6.13738 6.15987 6.20940 6.28977 6.37003 6.39769 6.47373 6.67332 6.88824 7.01328 7.08296 7.14817 7.29049 7.55130 7.61258 7.65293 7.77689 7.89319 8.02422 8.51717 9.29588 9.91270 10.50861 11.35337 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.040576 B = 0.006417 C = 0.006034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.897049 B = 4362.221741 C = 4638.942853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.172 4.172 3 C -0.014 4.014 4 C 0.061 3.939 5 N -0.530 5.530 6 C 0.043 3.957 7 C 0.199 3.801 8 H 0.090 0.910 9 C -0.136 4.136 10 N -0.585 5.585 11 C -0.248 4.248 12 H 0.068 0.932 13 C 0.004 3.996 14 N -0.896 5.896 15 Si 0.896 3.104 16 H -0.292 1.292 17 H -0.287 1.287 18 H -0.284 1.284 19 C 0.171 3.829 20 H 0.034 0.966 21 C -0.137 4.137 22 C 0.044 3.956 23 H 0.214 0.786 24 H 0.095 0.905 25 H 0.087 0.913 26 H 0.028 0.972 27 H 0.071 0.929 28 H 0.023 0.977 29 H 0.060 0.940 30 H 0.033 0.967 31 H 0.019 0.981 32 H 0.075 0.925 33 H 0.251 0.749 34 H 0.050 0.950 35 H 0.038 0.962 36 H 0.063 0.937 37 H 0.027 0.973 38 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.198 1.389 -4.663 12.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.173 4.173 3 C -0.050 4.050 4 C -0.068 4.068 5 N -0.254 5.254 6 C -0.086 4.086 7 C 0.092 3.908 8 H 0.108 0.892 9 C -0.195 4.195 10 N -0.308 5.308 11 C -0.378 4.378 12 H 0.086 0.914 13 C -0.195 4.195 14 N -0.541 5.541 15 Si 0.726 3.274 16 H -0.218 1.218 17 H -0.213 1.213 18 H -0.210 1.210 19 C 0.064 3.936 20 H 0.052 0.948 21 C -0.195 4.195 22 C -0.085 4.085 23 H 0.231 0.769 24 H 0.113 0.887 25 H 0.105 0.895 26 H 0.047 0.953 27 H 0.090 0.910 28 H 0.042 0.958 29 H 0.078 0.922 30 H 0.052 0.948 31 H 0.038 0.962 32 H 0.094 0.906 33 H 0.062 0.938 34 H 0.069 0.931 35 H 0.057 0.943 36 H 0.082 0.918 37 H 0.046 0.954 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -10.841 1.916 -4.647 11.949 hybrid contribution 0.003 -1.521 0.562 1.622 sum -10.838 0.394 -4.085 11.589 Atomic orbital electron populations 1.24820 0.95884 1.02178 1.01606 1.23294 0.94644 0.99521 0.99794 1.18790 0.83717 1.03166 0.99370 1.21987 0.89435 0.98507 0.96849 1.61907 1.04614 1.53596 1.05279 1.22847 0.99854 0.97078 0.88837 1.20343 0.85873 0.92056 0.92488 0.89247 1.21971 1.02942 0.96859 0.97770 1.44259 1.37609 1.48998 0.99909 1.19140 1.01954 1.02608 1.14072 0.91432 1.25019 0.96861 0.95975 1.01641 1.70041 1.40798 1.20999 1.22219 0.86485 0.80573 0.82333 0.78033 1.21753 1.21335 1.21032 1.20566 0.89232 0.96353 0.87425 0.94825 1.21798 1.01776 0.99416 0.96547 1.22834 0.98268 0.94036 0.93363 0.76864 0.88674 0.89496 0.95344 0.91011 0.95836 0.92187 0.94774 0.96171 0.90565 0.93849 0.93077 0.94286 0.91762 0.95435 0.92027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -2.57 19.25 29.55 0.57 -2.00 16 2 C -0.17 -2.22 13.34 -37.12 -0.50 -2.72 16 3 C -0.01 -0.18 5.63 -29.52 -0.17 -0.34 16 4 C 0.06 0.90 4.92 -3.82 -0.02 0.88 16 5 N -0.53 -9.36 4.13 -234.02 -0.97 -10.33 16 6 C 0.04 0.84 5.01 -3.70 -0.02 0.82 16 7 C 0.20 4.63 2.34 -67.49 -0.16 4.47 16 8 H 0.09 2.35 6.28 -51.93 -0.33 2.03 16 9 C -0.14 -3.10 8.96 37.15 0.33 -2.76 16 10 N -0.58 -14.19 2.71 -156.74 -0.43 -14.61 16 11 C -0.25 -6.57 8.63 -15.06 -0.13 -6.70 16 12 H 0.07 1.76 6.26 -52.49 -0.33 1.43 16 13 C 0.00 0.10 4.93 -17.43 -0.09 0.01 16 14 N -0.90 -25.04 9.77 55.49 0.54 -24.50 16 15 Si 0.90 21.42 29.59 -169.99 -5.03 16.39 16 16 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 17 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 18 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 19 C 0.17 3.55 3.28 -67.25 -0.22 3.33 16 20 H 0.03 0.75 7.62 -51.93 -0.40 0.35 16 21 C -0.14 -2.57 7.96 37.16 0.30 -2.27 16 22 C 0.04 0.80 4.78 -3.46 -0.02 0.78 16 23 H 0.21 1.60 7.80 -54.09 -0.42 1.18 16 24 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 25 H 0.09 1.09 6.40 -51.93 -0.33 0.75 16 26 H 0.03 0.43 8.12 -51.93 -0.42 0.01 16 27 H 0.07 1.03 7.97 -51.93 -0.41 0.62 16 28 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 1.09 7.99 -51.93 -0.41 0.67 16 30 H 0.03 0.75 7.08 -51.93 -0.37 0.38 16 31 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.08 1.97 6.74 -51.93 -0.35 1.62 16 33 H 0.25 6.90 8.32 -40.82 -0.34 6.56 16 34 H 0.05 0.97 7.59 -51.93 -0.39 0.57 16 35 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.06 1.30 7.53 -51.93 -0.39 0.90 16 37 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.06 0.95 6.16 -51.93 -0.32 0.63 16 LS Contribution 299.15 15.07 4.51 4.51 Total: -1.00 -28.08 299.15 -7.61 -35.69 By element: Atomic # 1 Polarization: 5.48 SS G_CDS: -6.13 Total: -0.65 kcal Atomic # 6 Polarization: -6.39 SS G_CDS: -0.11 Total: -6.50 kcal Atomic # 7 Polarization: -48.59 SS G_CDS: -0.85 Total: -49.44 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.03 Total: 16.39 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -28.08 -7.61 -35.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878772052.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.351 kcal (2) G-P(sol) polarization free energy of solvation -28.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.689 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds