Wall clock time and date at job start Sun Mar 29 2020 21:59:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 C 1.52998 * 109.47061 * 297.35246 * 3 2 1 5 5 N 1.46902 * 109.47194 * 179.97438 * 4 3 2 6 6 C 1.46898 * 111.00286 * 169.99818 * 5 4 3 7 7 C 1.53237 * 109.34102 * 187.25655 * 6 5 4 8 8 H 1.09005 * 109.62838 * 186.46222 * 7 6 5 9 9 C 1.52993 * 109.79042 * 65.97617 * 7 6 5 10 10 N 1.47081 * 108.52131 * 306.17057 * 7 6 5 11 11 C 1.36932 * 120.87903 * 231.19288 * 10 7 6 12 12 H 1.08001 * 120.00170 * 151.02815 * 11 10 7 13 13 C 1.38813 * 120.00244 * 331.02025 * 11 10 7 14 14 N 1.31625 * 119.99909 * 343.80860 * 13 11 10 15 15 Si 1.86802 * 120.00153 * 163.80225 * 13 11 10 16 16 H 1.48498 * 109.46850 * 180.02562 * 15 13 11 17 17 H 1.48500 * 109.47259 * 300.00475 * 15 13 11 18 18 H 1.48503 * 109.46703 * 60.00587 * 15 13 11 19 19 C 1.47074 * 118.23750 * 51.45872 * 10 7 6 20 20 H 1.08998 * 109.63237 * 68.24728 * 19 10 7 21 21 C 1.53002 * 109.62973 * 188.83397 * 19 10 7 22 22 C 1.46901 * 111.00139 * 294.30286 * 5 4 3 23 23 H 4.44647 * 5.63328 * 179.97438 * 4 1 2 24 24 H 1.08993 * 109.47442 * 177.34916 * 3 2 1 25 25 H 1.08998 * 109.47142 * 57.34965 * 3 2 1 26 26 H 1.08998 * 109.47488 * 60.00242 * 4 3 2 27 27 H 1.08998 * 109.47438 * 299.99821 * 4 3 2 28 28 H 1.09003 * 109.49259 * 67.29409 * 6 5 4 29 29 H 1.09004 * 109.49125 * 307.21972 * 6 5 4 30 30 H 1.09001 * 109.47326 * 300.87168 * 9 7 6 31 31 H 1.08998 * 109.47301 * 60.87142 * 9 7 6 32 32 H 1.08998 * 109.47514 * 180.87144 * 9 7 6 33 33 H 0.97000 * 120.00124 * 175.07858 * 14 13 11 34 34 H 1.08998 * 109.46872 * 60.31451 * 21 19 10 35 35 H 1.09003 * 109.47011 * 180.31368 * 21 19 10 36 36 H 1.09000 * 109.46769 * 300.31586 * 21 19 10 37 37 H 1.09002 * 109.48971 * 292.70443 * 22 5 4 38 38 H 1.09006 * 109.49117 * 52.78751 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1562 -0.6619 1.2812 5 7 4.6253 -0.6618 1.2810 6 6 5.1520 -1.0705 2.5899 7 6 6.6729 -0.8841 2.6056 8 1 7.0823 -1.2918 3.5300 9 6 7.0135 0.6041 2.5052 10 7 7.2434 -1.6002 1.4545 11 6 8.2783 -2.4819 1.6179 12 1 8.3897 -3.3154 0.9402 13 6 9.1844 -2.3042 2.6544 14 7 9.2532 -1.1467 3.2772 15 14 10.3059 -3.7080 3.1655 16 1 11.1725 -3.2657 4.2873 17 1 9.4835 -4.8648 3.6021 18 1 11.1528 -4.1093 2.0135 19 6 6.6766 -1.3398 0.1226 20 1 6.9165 -0.3220 -0.1849 21 6 7.2545 -2.3352 -0.8855 22 6 5.1516 -1.5127 0.2054 23 1 -1.0499 0.0001 0.0002 24 1 3.0089 1.0273 -0.0475 25 1 3.0096 -0.5536 -0.8653 26 1 2.7934 -1.6886 1.3287 27 1 2.7927 -0.1077 2.1465 28 1 4.9122 -2.1190 2.7672 29 1 4.7022 -0.4571 3.3706 30 1 6.5972 1.0107 1.5836 31 1 6.5896 1.1322 3.3593 32 1 8.0962 0.7296 2.5013 33 1 9.8345 -1.0439 4.0469 34 1 6.9995 -3.3502 -0.5809 35 1 6.8371 -2.1364 -1.8726 36 1 8.3387 -2.2281 -0.9211 37 1 4.9118 -2.5550 0.4159 38 1 4.7016 -1.2199 -0.7433 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878772052.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:41 Heat of formation + Delta-G solvation = 64.625856 kcal Electronic energy + Delta-G solvation = -17503.651841 eV Core-core repulsion = 14961.689022 eV Total energy + Delta-G solvation = -2541.962819 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.18357 -37.06658 -34.82290 -34.19051 -33.06499 -30.56533 -29.39001 -27.67968 -26.28989 -25.17264 -22.61365 -22.29013 -20.34534 -18.95846 -17.95437 -17.11400 -16.43182 -16.29678 -15.66819 -15.45169 -15.16737 -15.06514 -14.53906 -13.96207 -13.61708 -13.43147 -13.23209 -13.06436 -12.78163 -12.73218 -12.34009 -12.24203 -12.20883 -12.15861 -11.89624 -11.61357 -11.28844 -11.18295 -10.95496 -10.79801 -10.41800 -9.21057 -8.50919 -7.72151 -5.21312 1.49258 1.50862 1.56742 1.88898 1.96309 2.57278 2.99357 3.38380 3.64869 3.69607 4.08061 4.20884 4.33619 4.37043 4.54300 4.59684 4.62511 4.68602 4.80089 4.86349 4.89206 5.00463 5.03460 5.09174 5.12735 5.21899 5.29368 5.35359 5.46414 5.58351 5.72705 5.79719 6.04798 6.23099 6.31070 6.51897 6.74863 7.28209 7.98200 8.52656 9.29119 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.040576 B = 0.006417 C = 0.006034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.897049 B = 4362.221741 C = 4638.942853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.216 4.216 3 C -0.004 4.004 4 C 0.066 3.934 5 N -0.534 5.534 6 C 0.055 3.945 7 C 0.196 3.804 8 H 0.053 0.947 9 C -0.119 4.119 10 N -0.600 5.600 11 C -0.252 4.252 12 H 0.069 0.931 13 C -0.046 4.046 14 N -0.920 5.920 15 Si 0.953 3.047 16 H -0.298 1.298 17 H -0.285 1.285 18 H -0.279 1.279 19 C 0.163 3.837 20 H 0.021 0.979 21 C -0.129 4.129 22 C 0.055 3.945 23 H 0.247 0.753 24 H 0.096 0.904 25 H 0.092 0.908 26 H 0.027 0.973 27 H 0.076 0.924 28 H 0.012 0.988 29 H 0.076 0.924 30 H 0.038 0.962 31 H 0.034 0.966 32 H 0.040 0.960 33 H 0.244 0.756 34 H 0.045 0.955 35 H 0.076 0.924 36 H 0.042 0.958 37 H 0.019 0.981 38 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.327 1.223 -5.804 14.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.217 4.217 3 C -0.041 4.041 4 C -0.062 4.062 5 N -0.258 5.258 6 C -0.074 4.074 7 C 0.089 3.911 8 H 0.071 0.929 9 C -0.178 4.178 10 N -0.324 5.324 11 C -0.382 4.382 12 H 0.086 0.914 13 C -0.242 4.242 14 N -0.566 5.566 15 Si 0.783 3.217 16 H -0.224 1.224 17 H -0.211 1.211 18 H -0.205 1.205 19 C 0.057 3.943 20 H 0.039 0.961 21 C -0.187 4.187 22 C -0.075 4.075 23 H 0.263 0.737 24 H 0.114 0.886 25 H 0.110 0.890 26 H 0.045 0.955 27 H 0.095 0.905 28 H 0.031 0.969 29 H 0.095 0.905 30 H 0.057 0.943 31 H 0.053 0.947 32 H 0.059 0.941 33 H 0.054 0.946 34 H 0.064 0.936 35 H 0.095 0.905 36 H 0.061 0.939 37 H 0.037 0.963 38 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -12.991 1.746 -5.813 14.339 hybrid contribution 0.577 -1.438 0.871 1.778 sum -12.414 0.307 -4.942 13.366 Atomic orbital electron populations 1.25685 0.96774 1.00205 0.99502 1.23462 0.95145 1.01368 1.01715 1.18624 0.84241 1.02996 0.98265 1.21987 0.87073 0.98774 0.98351 1.61860 1.06652 1.53224 1.04032 1.22561 0.97293 0.96852 0.90686 1.20246 0.88166 0.91770 0.90874 0.92936 1.21747 1.00502 0.96968 0.98586 1.44505 1.37395 1.48873 1.01640 1.19414 1.02134 1.02936 1.13733 0.91353 1.25660 0.98476 0.97812 1.02271 1.70201 1.41668 1.22340 1.22422 0.85571 0.78902 0.79907 0.77367 1.22403 1.21139 1.20546 1.20780 0.91248 0.96150 0.86153 0.96138 1.21705 1.00442 0.98533 0.97973 1.22694 0.96125 0.93724 0.94924 0.73673 0.88611 0.89033 0.95477 0.90540 0.96925 0.90521 0.94256 0.94677 0.94132 0.94650 0.93550 0.90539 0.93914 0.96275 0.88853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.92 19.25 74.32 1.43 -2.49 16 2 C -0.22 -5.00 13.34 31.12 0.42 -4.58 16 3 C 0.00 -0.10 5.63 28.79 0.16 0.06 16 4 C 0.07 1.80 4.92 86.30 0.42 2.22 16 5 N -0.53 -17.91 4.13 -894.29 -3.69 -21.60 16 6 C 0.06 2.13 5.01 86.38 0.43 2.57 16 7 C 0.20 9.24 2.34 44.96 0.11 9.35 16 8 H 0.05 2.86 6.28 -2.38 -0.01 2.84 16 9 C -0.12 -5.45 8.96 71.98 0.65 -4.81 16 10 N -0.60 -29.41 2.71 -649.81 -1.76 -31.17 16 11 C -0.25 -13.51 8.63 84.03 0.73 -12.79 16 12 H 0.07 3.59 6.26 -2.91 -0.02 3.57 16 13 C -0.05 -2.55 4.93 84.86 0.42 -2.13 16 14 N -0.92 -53.07 9.77 21.65 0.21 -52.86 16 15 Si 0.95 44.89 29.59 68.60 2.03 46.92 16 16 H -0.30 -14.19 7.11 99.48 0.71 -13.49 16 17 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 18 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 19 C 0.16 6.61 3.28 45.12 0.15 6.76 16 20 H 0.02 0.90 7.62 -2.39 -0.02 0.89 16 21 C -0.13 -4.64 7.96 71.98 0.57 -4.07 16 22 C 0.05 1.84 4.78 86.54 0.41 2.26 16 23 H 0.25 2.62 7.80 -4.42 -0.03 2.58 16 24 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16 25 H 0.09 2.01 6.40 -2.39 -0.02 1.99 16 26 H 0.03 0.76 8.12 -2.39 -0.02 0.74 16 27 H 0.08 2.02 7.97 -2.39 -0.02 2.00 16 28 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 29 H 0.08 2.68 7.99 -2.39 -0.02 2.66 16 30 H 0.04 1.71 7.08 -2.39 -0.02 1.69 16 31 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.04 2.13 6.74 -2.39 -0.02 2.12 16 33 H 0.24 13.89 8.32 -92.71 -0.77 13.11 16 34 H 0.05 1.70 7.59 -2.39 -0.02 1.68 16 35 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 36 H 0.04 1.70 7.53 -2.39 -0.02 1.68 16 37 H 0.02 0.68 8.14 -2.39 -0.02 0.67 16 38 H 0.09 2.58 6.16 -2.38 -0.01 2.56 16 Total: -1.00 -61.14 299.15 3.69 -57.45 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: 1.01 Total: 8.93 kcal Atomic # 6 Polarization: -13.56 SS G_CDS: 5.89 Total: -7.66 kcal Atomic # 7 Polarization: -100.39 SS G_CDS: -5.25 Total: -105.63 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Total: -61.14 3.69 -57.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878772052.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.076 kcal (2) G-P(sol) polarization free energy of solvation -61.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.451 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds