Wall clock time and date at job start Sun Mar 29 2020 21:59:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47208 * 179.97438 * 2 1 4 4 C 1.53005 * 109.46851 * 195.19238 * 3 2 1 5 5 N 1.46893 * 109.47078 * 180.02562 * 4 3 2 6 6 C 1.46905 * 110.99715 * 294.30172 * 5 4 3 7 7 C 1.53239 * 109.33750 * 172.75021 * 6 5 4 8 8 H 1.09007 * 109.62796 * 173.53917 * 7 6 5 9 9 C 1.52997 * 109.78989 * 294.01937 * 7 6 5 10 10 N 1.47081 * 108.52674 * 53.82780 * 7 6 5 11 11 C 1.36934 * 120.88356 * 128.79087 * 10 7 6 12 12 H 1.07993 * 120.00006 * 206.20868 * 11 10 7 13 13 C 1.38813 * 119.99620 * 26.21324 * 11 10 7 14 14 N 1.31621 * 120.00573 * 17.45443 * 13 11 10 15 15 Si 1.86803 * 119.99662 * 197.45655 * 13 11 10 16 16 H 1.48501 * 109.47355 * 59.99835 * 15 13 11 17 17 H 1.48498 * 109.47335 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.47207 * 299.99954 * 15 13 11 19 19 C 1.47080 * 118.23403 * 308.81154 * 10 7 6 20 20 H 1.08991 * 109.63143 * 291.48077 * 19 10 7 21 21 C 1.53002 * 109.78647 * 170.98744 * 19 10 7 22 22 C 1.46897 * 111.00319 * 169.99720 * 5 4 3 23 23 H 4.44650 * 5.63394 * 179.97438 * 4 1 2 24 24 H 1.08996 * 109.47152 * 315.19216 * 3 2 1 25 25 H 1.08996 * 109.46997 * 75.19238 * 3 2 1 26 26 H 1.09008 * 109.46851 * 300.00021 * 4 3 2 27 27 H 1.08998 * 109.47042 * 59.99733 * 4 3 2 28 28 H 1.09005 * 109.49109 * 292.70439 * 6 5 4 29 29 H 1.08998 * 109.49500 * 52.78656 * 6 5 4 30 30 H 1.09004 * 109.47864 * 179.13047 * 9 7 6 31 31 H 1.09004 * 109.47178 * 299.13446 * 9 7 6 32 32 H 1.09003 * 109.47328 * 59.12774 * 9 7 6 33 33 H 0.96997 * 120.00230 * 179.97438 * 14 13 11 34 34 H 1.08998 * 109.47385 * 300.87597 * 21 19 10 35 35 H 1.09000 * 109.47225 * 60.87719 * 21 19 10 36 36 H 1.09006 * 109.46946 * 180.87795 * 21 19 10 37 37 H 1.08997 * 109.49372 * 307.21174 * 22 5 4 38 38 H 1.09002 * 109.49108 * 67.26229 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 6 3.1554 1.3930 0.3780 5 7 4.6243 1.3939 0.3775 6 6 5.1516 0.5218 1.4355 7 6 6.6726 0.4075 1.2878 8 1 7.0824 -0.1432 2.1346 9 6 7.0133 -0.3222 -0.0131 10 7 7.2424 1.7631 1.2577 11 6 8.2771 2.1092 2.0852 12 1 8.4141 3.1401 2.3763 13 6 9.1499 1.1348 2.5497 14 7 9.2105 -0.0349 1.9493 15 14 10.2384 1.4838 4.0272 16 1 9.3893 1.7959 5.2049 17 1 11.0728 0.2908 4.3201 18 1 11.1189 2.6423 3.7308 19 6 6.6710 2.7373 0.3155 20 1 6.9105 2.4426 -0.7061 21 6 7.2440 4.1277 0.5971 22 6 5.1500 2.7600 0.5015 23 1 -1.0502 -0.0003 -0.0003 24 1 3.0097 -0.7282 0.7242 25 1 3.0095 -0.2618 -0.9935 26 1 2.7916 2.1220 -0.3463 27 1 2.7919 1.6555 1.3715 28 1 4.9118 0.9467 2.4103 29 1 4.7024 -0.4675 1.3490 30 1 8.0961 -0.3870 -0.1206 31 1 6.5899 -1.3263 0.0119 32 1 6.5966 0.2268 -0.8576 33 1 9.8207 -0.7155 2.2737 34 1 7.0089 4.4170 1.6214 35 1 8.3256 4.1088 0.4641 36 1 6.8055 4.8481 -0.0935 37 1 4.6996 3.3938 -0.2623 38 1 4.9098 3.1539 1.4891 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878772054.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:45 Heat of formation + Delta-G solvation = 81.686094 kcal Electronic energy + Delta-G solvation = -17521.565218 eV Core-core repulsion = 14980.342186 eV Total energy + Delta-G solvation = -2541.223032 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -38.63161 -35.62160 -33.53924 -32.50910 -31.25763 -29.39413 -27.62246 -25.94595 -24.84529 -23.32086 -21.49691 -20.43153 -18.54071 -18.01557 -16.23553 -15.50267 -14.86340 -14.63745 -14.36816 -13.88945 -13.58737 -13.44224 -12.87907 -12.64040 -12.36312 -11.80877 -11.53984 -11.41954 -11.14765 -10.92873 -10.86823 -10.57812 -10.55487 -10.41246 -10.14923 -10.00283 -9.94871 -9.84451 -9.36901 -9.15532 -8.41636 -7.74810 -6.58286 -5.71389 -3.11594 2.82828 2.87996 3.40838 3.47165 3.48141 4.21957 4.53398 4.72518 5.22079 5.34407 5.40181 5.45610 5.67501 5.80868 5.92834 6.02311 6.05946 6.13495 6.16587 6.20217 6.29305 6.36940 6.40430 6.47267 6.67339 6.89526 6.99802 7.07707 7.14679 7.28670 7.55468 7.63635 7.65474 7.78416 7.90040 8.01034 8.50912 9.29626 9.92337 10.50381 11.36095 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.034225 B = 0.006721 C = 0.006196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.910130 B = 4165.124704 C = 4518.160347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.171 4.171 3 C -0.014 4.014 4 C 0.061 3.939 5 N -0.530 5.530 6 C 0.037 3.963 7 C 0.197 3.803 8 H 0.095 0.905 9 C -0.135 4.135 10 N -0.585 5.585 11 C -0.248 4.248 12 H 0.070 0.930 13 C 0.002 3.998 14 N -0.899 5.899 15 Si 0.898 3.102 16 H -0.287 1.287 17 H -0.292 1.292 18 H -0.285 1.285 19 C 0.171 3.829 20 H 0.033 0.967 21 C -0.138 4.138 22 C 0.050 3.950 23 H 0.214 0.786 24 H 0.089 0.911 25 H 0.095 0.905 26 H 0.070 0.930 27 H 0.028 0.972 28 H 0.023 0.977 29 H 0.062 0.938 30 H 0.072 0.928 31 H 0.020 0.980 32 H 0.033 0.967 33 H 0.252 0.748 34 H 0.051 0.949 35 H 0.062 0.938 36 H 0.039 0.961 37 H 0.059 0.941 38 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.089 1.688 -3.207 11.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.171 4.171 3 C -0.051 4.051 4 C -0.067 4.067 5 N -0.254 5.254 6 C -0.092 4.092 7 C 0.090 3.910 8 H 0.112 0.888 9 C -0.194 4.194 10 N -0.308 5.308 11 C -0.378 4.378 12 H 0.087 0.913 13 C -0.197 4.197 14 N -0.544 5.544 15 Si 0.728 3.272 16 H -0.213 1.213 17 H -0.218 1.218 18 H -0.211 1.211 19 C 0.064 3.936 20 H 0.051 0.949 21 C -0.196 4.196 22 C -0.079 4.079 23 H 0.231 0.769 24 H 0.107 0.893 25 H 0.113 0.887 26 H 0.088 0.912 27 H 0.047 0.953 28 H 0.042 0.958 29 H 0.081 0.919 30 H 0.091 0.909 31 H 0.039 0.961 32 H 0.052 0.948 33 H 0.062 0.938 34 H 0.070 0.930 35 H 0.081 0.919 36 H 0.058 0.942 37 H 0.078 0.922 38 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -10.778 1.381 -3.601 11.448 hybrid contribution 0.019 0.379 1.567 1.612 sum -10.759 1.761 -2.034 11.090 Atomic orbital electron populations 1.24815 0.95874 1.01561 1.02381 1.23310 0.94645 0.99778 0.99403 1.18791 0.83648 0.98730 1.03919 1.21975 0.89434 0.95698 0.99606 1.61915 1.04634 1.10753 1.48133 1.22941 0.99912 0.95294 0.91027 1.20409 0.85898 0.86207 0.98450 0.88759 1.21952 1.02678 0.96551 0.98189 1.44273 1.37435 1.07783 1.41325 1.19156 1.03789 0.94304 1.20535 0.91267 1.24968 0.97477 0.97380 0.99839 1.70006 1.39078 1.05821 1.39454 0.86446 0.80259 0.76994 0.83499 1.21339 1.21756 1.21094 1.20455 0.89271 0.90112 0.93719 0.94895 1.21801 1.01639 0.95749 1.00373 1.22655 0.98243 0.88308 0.98717 0.76871 0.89322 0.88659 0.91188 0.95334 0.95848 0.91950 0.90895 0.96099 0.94799 0.93795 0.92986 0.91854 0.94237 0.92224 0.95453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -2.64 19.25 29.55 0.57 -2.07 16 2 C -0.17 -2.26 13.34 -37.12 -0.50 -2.76 16 3 C -0.01 -0.19 5.63 -29.51 -0.17 -0.36 16 4 C 0.06 0.91 4.92 -3.83 -0.02 0.89 16 5 N -0.53 -9.38 4.13 -234.31 -0.97 -10.35 16 6 C 0.04 0.72 4.86 -3.70 -0.02 0.71 16 7 C 0.20 4.57 2.34 -67.49 -0.16 4.41 16 8 H 0.09 2.49 6.10 -51.93 -0.32 2.17 16 9 C -0.13 -3.03 8.97 37.16 0.33 -2.70 16 10 N -0.58 -14.21 2.73 -157.01 -0.43 -14.63 16 11 C -0.25 -6.57 8.74 -15.06 -0.13 -6.71 16 12 H 0.07 1.80 6.17 -52.49 -0.32 1.48 16 13 C 0.00 0.04 4.93 -17.43 -0.09 -0.04 16 14 N -0.90 -25.08 9.78 55.49 0.54 -24.54 16 15 Si 0.90 21.45 29.59 -169.99 -5.03 16.43 16 16 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 17 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 18 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 19 C 0.17 3.57 3.25 -67.49 -0.22 3.35 16 20 H 0.03 0.73 7.63 -51.93 -0.40 0.34 16 21 C -0.14 -2.58 7.94 37.16 0.29 -2.28 16 22 C 0.05 0.91 4.91 -3.70 -0.02 0.89 16 23 H 0.21 1.65 7.80 -54.08 -0.42 1.22 16 24 H 0.09 1.20 6.40 -51.93 -0.33 0.87 16 25 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 26 H 0.07 0.97 7.97 -51.92 -0.41 0.56 16 27 H 0.03 0.43 8.12 -51.93 -0.42 0.01 16 28 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 1.10 6.16 -51.93 -0.32 0.78 16 30 H 0.07 1.87 6.90 -51.93 -0.36 1.51 16 31 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.03 0.73 7.10 -51.93 -0.37 0.37 16 33 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 34 H 0.05 0.99 7.55 -51.93 -0.39 0.59 16 35 H 0.06 1.27 7.58 -51.93 -0.39 0.88 16 36 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.06 0.95 7.99 -51.93 -0.41 0.54 16 38 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 299.15 15.07 4.51 4.51 Total: -1.00 -28.05 299.15 -7.61 -35.66 By element: Atomic # 1 Polarization: 5.72 SS G_CDS: -6.12 Total: -0.40 kcal Atomic # 6 Polarization: -6.56 SS G_CDS: -0.11 Total: -6.67 kcal Atomic # 7 Polarization: -48.67 SS G_CDS: -0.85 Total: -49.52 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.03 Total: 16.43 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -28.05 -7.61 -35.66 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878772054.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.350 kcal (2) G-P(sol) polarization free energy of solvation -28.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.664 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds