Wall clock time and date at job start Sun Mar 29 2020 21:59:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47208 * 179.97438 * 2 1 4 4 C 1.53005 * 109.46851 * 195.19238 * 3 2 1 5 5 N 1.46893 * 109.47078 * 180.02562 * 4 3 2 6 6 C 1.46905 * 110.99715 * 294.30172 * 5 4 3 7 7 C 1.53239 * 109.33750 * 172.75021 * 6 5 4 8 8 H 1.09007 * 109.62796 * 173.53917 * 7 6 5 9 9 C 1.52997 * 109.78989 * 294.01937 * 7 6 5 10 10 N 1.47081 * 108.52674 * 53.82780 * 7 6 5 11 11 C 1.36934 * 120.88356 * 128.79087 * 10 7 6 12 12 H 1.07993 * 120.00006 * 206.20868 * 11 10 7 13 13 C 1.38813 * 119.99620 * 26.21324 * 11 10 7 14 14 N 1.31621 * 120.00573 * 17.45443 * 13 11 10 15 15 Si 1.86803 * 119.99662 * 197.45655 * 13 11 10 16 16 H 1.48501 * 109.47355 * 59.99835 * 15 13 11 17 17 H 1.48498 * 109.47335 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.47207 * 299.99954 * 15 13 11 19 19 C 1.47080 * 118.23403 * 308.81154 * 10 7 6 20 20 H 1.08991 * 109.63143 * 291.48077 * 19 10 7 21 21 C 1.53002 * 109.78647 * 170.98744 * 19 10 7 22 22 C 1.46897 * 111.00319 * 169.99720 * 5 4 3 23 23 H 4.44650 * 5.63394 * 179.97438 * 4 1 2 24 24 H 1.08996 * 109.47152 * 315.19216 * 3 2 1 25 25 H 1.08996 * 109.46997 * 75.19238 * 3 2 1 26 26 H 1.09008 * 109.46851 * 300.00021 * 4 3 2 27 27 H 1.08998 * 109.47042 * 59.99733 * 4 3 2 28 28 H 1.09005 * 109.49109 * 292.70439 * 6 5 4 29 29 H 1.08998 * 109.49500 * 52.78656 * 6 5 4 30 30 H 1.09004 * 109.47864 * 179.13047 * 9 7 6 31 31 H 1.09004 * 109.47178 * 299.13446 * 9 7 6 32 32 H 1.09003 * 109.47328 * 59.12774 * 9 7 6 33 33 H 0.96997 * 120.00230 * 179.97438 * 14 13 11 34 34 H 1.08998 * 109.47385 * 300.87597 * 21 19 10 35 35 H 1.09000 * 109.47225 * 60.87719 * 21 19 10 36 36 H 1.09006 * 109.46946 * 180.87795 * 21 19 10 37 37 H 1.08997 * 109.49372 * 307.21174 * 22 5 4 38 38 H 1.09002 * 109.49108 * 67.26229 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 6 3.1554 1.3930 0.3780 5 7 4.6243 1.3939 0.3775 6 6 5.1516 0.5218 1.4355 7 6 6.6726 0.4075 1.2878 8 1 7.0824 -0.1432 2.1346 9 6 7.0133 -0.3222 -0.0131 10 7 7.2424 1.7631 1.2577 11 6 8.2771 2.1092 2.0852 12 1 8.4141 3.1401 2.3763 13 6 9.1499 1.1348 2.5497 14 7 9.2105 -0.0349 1.9493 15 14 10.2384 1.4838 4.0272 16 1 9.3893 1.7959 5.2049 17 1 11.0728 0.2908 4.3201 18 1 11.1189 2.6423 3.7308 19 6 6.6710 2.7373 0.3155 20 1 6.9105 2.4426 -0.7061 21 6 7.2440 4.1277 0.5971 22 6 5.1500 2.7600 0.5015 23 1 -1.0502 -0.0003 -0.0003 24 1 3.0097 -0.7282 0.7242 25 1 3.0095 -0.2618 -0.9935 26 1 2.7916 2.1220 -0.3463 27 1 2.7919 1.6555 1.3715 28 1 4.9118 0.9467 2.4103 29 1 4.7024 -0.4675 1.3490 30 1 8.0961 -0.3870 -0.1206 31 1 6.5899 -1.3263 0.0119 32 1 6.5966 0.2268 -0.8576 33 1 9.8207 -0.7155 2.2737 34 1 7.0089 4.4170 1.6214 35 1 8.3256 4.1088 0.4641 36 1 6.8055 4.8481 -0.0935 37 1 4.6996 3.3938 -0.2623 38 1 4.9098 3.1539 1.4891 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878772054.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:45 Heat of formation + Delta-G solvation = 65.660176 kcal Electronic energy + Delta-G solvation = -17522.260154 eV Core-core repulsion = 14980.342186 eV Total energy + Delta-G solvation = -2541.917968 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.19786 -37.07155 -34.86499 -34.14732 -33.04504 -30.68824 -29.37000 -27.53038 -26.47972 -24.98997 -23.02271 -21.97946 -20.33459 -18.94190 -18.00795 -17.17249 -16.35583 -16.10053 -15.77861 -15.64306 -15.18700 -15.05370 -14.33507 -14.04078 -13.67826 -13.50903 -13.23284 -12.83655 -12.75711 -12.69471 -12.59013 -12.26938 -12.21568 -12.10580 -11.82104 -11.60746 -11.38294 -11.09396 -10.96500 -10.81633 -10.41508 -9.21302 -8.51638 -7.74990 -5.16426 1.48879 1.50884 1.56574 1.88723 1.95681 2.56747 2.99009 3.38314 3.64608 3.68985 4.07882 4.24783 4.29640 4.37461 4.55835 4.58288 4.62392 4.66764 4.80541 4.86638 4.89579 4.99646 5.03447 5.09130 5.14176 5.20890 5.28255 5.37021 5.45111 5.57625 5.73795 5.80633 6.04528 6.23530 6.30858 6.51427 6.74145 7.28105 7.99341 8.52256 9.29919 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.034225 B = 0.006721 C = 0.006196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.910130 B = 4165.124704 C = 4518.160347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.217 4.217 3 C -0.007 4.007 4 C 0.067 3.933 5 N -0.534 5.534 6 C 0.052 3.948 7 C 0.194 3.806 8 H 0.057 0.943 9 C -0.117 4.117 10 N -0.601 5.601 11 C -0.252 4.252 12 H 0.071 0.929 13 C -0.049 4.049 14 N -0.922 5.922 15 Si 0.955 3.045 16 H -0.285 1.285 17 H -0.297 1.297 18 H -0.280 1.280 19 C 0.163 3.837 20 H 0.020 0.980 21 C -0.129 4.129 22 C 0.058 3.942 23 H 0.248 0.752 24 H 0.083 0.917 25 H 0.096 0.904 26 H 0.084 0.916 27 H 0.026 0.974 28 H 0.010 0.990 29 H 0.081 0.919 30 H 0.036 0.964 31 H 0.036 0.964 32 H 0.038 0.962 33 H 0.245 0.755 34 H 0.046 0.954 35 H 0.042 0.958 36 H 0.076 0.924 37 H 0.090 0.910 38 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.283 2.567 -3.653 14.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.217 4.217 3 C -0.044 4.044 4 C -0.061 4.061 5 N -0.258 5.258 6 C -0.077 4.077 7 C 0.087 3.913 8 H 0.075 0.925 9 C -0.176 4.176 10 N -0.325 5.325 11 C -0.383 4.383 12 H 0.088 0.912 13 C -0.244 4.244 14 N -0.569 5.569 15 Si 0.784 3.216 16 H -0.212 1.212 17 H -0.224 1.224 18 H -0.206 1.206 19 C 0.057 3.943 20 H 0.038 0.962 21 C -0.187 4.187 22 C -0.071 4.071 23 H 0.265 0.735 24 H 0.101 0.899 25 H 0.114 0.886 26 H 0.103 0.897 27 H 0.044 0.956 28 H 0.028 0.972 29 H 0.099 0.901 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.054 0.946 34 H 0.065 0.935 35 H 0.061 0.939 36 H 0.095 0.905 37 H 0.108 0.892 38 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -12.994 2.281 -4.057 13.802 hybrid contribution 0.613 0.131 1.650 1.765 sum -12.380 2.412 -2.408 12.841 Atomic orbital electron populations 1.25691 0.96734 0.99302 1.00256 1.23436 0.95079 1.01844 1.01384 1.18624 0.84381 0.97624 1.03746 1.21985 0.87052 0.97103 0.99912 1.61874 1.06681 1.10255 1.46989 1.22641 0.97280 0.96795 0.91024 1.20315 0.88228 0.85669 0.97103 0.92483 1.21725 1.00187 0.97540 0.98133 1.44520 1.37225 1.08766 1.41963 1.19436 1.03962 0.94345 1.20536 0.91163 1.25605 0.99134 0.97565 1.02103 1.70171 1.39812 1.06392 1.40492 0.85535 0.78711 0.76494 0.80811 1.21182 1.22375 1.20582 1.20663 0.91225 0.90253 0.92155 0.96231 1.21706 1.00445 0.95463 1.01040 1.22530 0.96205 0.89041 0.99326 0.73535 0.89866 0.88598 0.89725 0.95599 0.97174 0.90073 0.94537 0.94469 0.94276 0.94602 0.93521 0.93879 0.90530 0.89181 0.96194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -4.00 19.25 74.32 1.43 -2.57 16 2 C -0.22 -5.22 13.34 31.13 0.42 -4.80 16 3 C -0.01 -0.17 5.63 28.79 0.16 -0.01 16 4 C 0.07 1.83 4.92 86.31 0.42 2.26 16 5 N -0.53 -17.94 4.13 -895.23 -3.70 -21.64 16 6 C 0.05 1.98 4.86 86.38 0.42 2.40 16 7 C 0.19 9.10 2.34 44.96 0.11 9.21 16 8 H 0.06 3.11 6.10 -2.38 -0.01 3.10 16 9 C -0.12 -5.32 8.97 71.98 0.65 -4.67 16 10 N -0.60 -29.48 2.73 -650.65 -1.78 -31.26 16 11 C -0.25 -13.57 8.74 84.03 0.73 -12.83 16 12 H 0.07 3.68 6.17 -2.91 -0.02 3.66 16 13 C -0.05 -2.68 4.93 84.86 0.42 -2.26 16 14 N -0.92 -53.16 9.78 21.65 0.21 -52.95 16 15 Si 0.95 44.97 29.59 68.60 2.03 47.00 16 16 H -0.29 -13.23 7.11 99.48 0.71 -12.53 16 17 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 18 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 19 C 0.16 6.66 3.25 44.96 0.15 6.80 16 20 H 0.02 0.87 7.63 -2.39 -0.02 0.85 16 21 C -0.13 -4.65 7.94 71.98 0.57 -4.08 16 22 C 0.06 1.99 4.91 86.39 0.42 2.42 16 23 H 0.25 2.71 7.80 -4.41 -0.03 2.67 16 24 H 0.08 2.13 6.40 -2.39 -0.02 2.12 16 25 H 0.10 2.35 8.14 -2.39 -0.02 2.34 16 26 H 0.08 2.08 7.97 -2.38 -0.02 2.06 16 27 H 0.03 0.73 8.12 -2.39 -0.02 0.71 16 28 H 0.01 0.41 8.14 -2.38 -0.02 0.39 16 29 H 0.08 2.78 6.16 -2.39 -0.01 2.76 16 30 H 0.04 1.91 6.90 -2.38 -0.02 1.89 16 31 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.04 1.69 7.10 -2.39 -0.02 1.67 16 33 H 0.24 13.91 8.31 -92.71 -0.77 13.14 16 34 H 0.05 1.71 7.55 -2.39 -0.02 1.70 16 35 H 0.04 1.70 7.58 -2.39 -0.02 1.68 16 36 H 0.08 2.17 8.14 -2.38 -0.02 2.15 16 37 H 0.09 2.55 7.99 -2.39 -0.02 2.53 16 38 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 Total: -1.00 -61.14 299.15 3.67 -57.47 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: 1.01 Total: 9.51 kcal Atomic # 6 Polarization: -14.04 SS G_CDS: 5.90 Total: -8.14 kcal Atomic # 7 Polarization: -100.58 SS G_CDS: -5.27 Total: -105.84 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Total: -61.14 3.67 -57.47 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878772054.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.130 kcal (2) G-P(sol) polarization free energy of solvation -61.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.470 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds