Wall clock time and date at job start Sun Mar 29 2020 21:36:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46500 * 109.46818 * 2 1 4 4 C 1.35322 * 125.86559 * 124.99551 * 3 2 1 5 5 C 1.35354 * 106.17325 * 179.97438 * 4 3 2 6 6 C 1.50695 * 126.74919 * 179.97438 * 5 4 3 7 7 N 1.46494 * 109.47281 * 95.00678 * 6 5 4 8 8 C 1.36938 * 120.00076 * 89.99653 * 7 6 5 9 9 H 1.08009 * 120.00162 * 218.05680 * 8 7 6 10 10 C 1.38807 * 120.00119 * 38.05707 * 8 7 6 11 11 N 1.31615 * 119.99749 * 20.57348 * 10 8 7 12 12 Si 1.86806 * 120.00005 * 200.57333 * 10 8 7 13 13 H 1.48495 * 109.47243 * 60.00210 * 12 10 8 14 14 H 1.48498 * 109.46909 * 180.02562 * 12 10 8 15 15 H 1.48504 * 109.46872 * 299.99793 * 12 10 8 16 16 C 1.46499 * 120.00117 * 270.00088 * 7 6 5 17 17 C 1.52996 * 117.50086 * 193.91893 * 16 7 6 18 18 C 1.52997 * 117.50415 * 125.29240 * 16 7 6 19 19 N 1.33778 * 106.49593 * 0.02562 * 5 4 3 20 20 N 1.28632 * 108.88328 * 359.97438 * 19 5 4 21 21 H 1.09004 * 109.47503 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.47424 * 300.00423 * 1 2 3 23 23 H 1.09010 * 109.47063 * 60.00444 * 1 2 3 24 24 H 1.08997 * 109.47424 * 239.99577 * 2 1 3 25 25 H 1.08997 * 109.46835 * 119.99810 * 2 1 3 26 26 H 1.07997 * 126.91126 * 359.71636 * 4 3 2 27 27 H 1.09005 * 109.47174 * 215.00437 * 6 5 4 28 28 H 1.08998 * 109.47629 * 335.00436 * 6 5 4 29 29 H 0.97008 * 119.99807 * 174.96080 * 11 10 8 30 30 H 1.09003 * 115.54477 * 339.62250 * 16 7 6 31 31 H 1.09001 * 117.50133 * 359.97438 * 17 16 7 32 32 H 1.09005 * 117.50205 * 145.01921 * 17 16 7 33 33 H 1.09003 * 117.50630 * 214.98137 * 18 16 7 34 34 H 1.09001 * 117.49594 * 359.97438 * 18 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.8755 1.9191 0.8984 5 6 3.0540 3.2077 0.5244 6 6 3.9227 4.2325 1.2070 7 7 5.2353 4.2705 0.5575 8 6 5.4547 5.1202 -0.4937 9 1 6.0653 4.8029 -1.3263 10 6 4.8926 6.3893 -0.4894 11 7 4.5047 6.9333 0.6446 12 14 4.6867 7.3252 -2.0929 13 1 3.8139 6.5494 -3.0103 14 1 4.0671 8.6466 -1.8188 15 1 6.0161 7.5238 -2.7243 16 6 6.3132 3.3995 1.0326 17 6 7.7324 3.7035 0.5488 18 6 6.9847 2.4832 0.0078 19 7 2.3067 3.3927 -0.5697 20 7 1.7058 2.2916 -0.8545 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3634 0.5139 0.8899 23 1 -0.3634 0.5138 -0.8901 24 1 1.8934 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 3.3234 1.4216 1.7458 27 1 3.4529 5.2134 1.1343 28 1 4.0443 3.9648 2.2565 29 1 4.1798 7.8473 0.6579 30 1 6.1977 3.0197 2.0478 31 1 7.8642 4.5515 -0.1234 32 1 8.5511 3.5240 1.2457 33 1 7.3115 1.5008 0.3487 34 1 6.6243 2.5282 -1.0199 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000883999782.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:48 Heat of formation + Delta-G solvation = 148.046975 kcal Electronic energy + Delta-G solvation = -16896.209677 eV Core-core repulsion = 14254.323926 eV Total energy + Delta-G solvation = -2641.885751 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.133 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.47032 -37.00018 -35.13248 -33.49707 -31.39803 -30.42684 -29.49337 -25.77191 -24.34463 -23.64332 -21.33879 -21.09948 -20.32330 -19.64238 -17.03265 -16.18711 -15.81914 -15.35890 -14.45839 -14.30265 -14.15808 -13.80284 -13.12306 -12.95053 -12.38063 -12.33631 -11.86954 -11.58472 -11.17830 -11.03207 -10.69383 -10.56856 -10.55222 -10.41995 -10.00865 -9.78182 -9.56556 -9.44724 -9.24386 -8.41721 -8.30411 -6.45430 -5.77215 -3.32262 2.25320 2.84333 3.41138 3.48302 3.51899 3.60391 4.52121 4.55167 4.79340 4.99209 5.01143 5.10515 5.37260 5.41459 5.44907 5.53196 5.76017 5.91080 5.92187 6.00886 6.16921 6.26510 6.29072 6.49394 6.62382 6.85744 7.00432 7.07845 7.21148 7.21751 7.61858 7.89486 8.56962 9.20043 9.33753 9.83481 10.37600 11.26019 Molecular weight = 236.13amu Principal moments of inertia in cm(-1) A = 0.022591 B = 0.008728 C = 0.007073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.116921 B = 3207.378788 C = 3957.724172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.117 3.883 3 N -0.304 5.304 4 C -0.073 4.073 5 C 0.002 3.998 6 C 0.218 3.782 7 N -0.538 5.538 8 C -0.259 4.259 9 H 0.058 0.942 10 C 0.026 3.974 11 N -0.888 5.888 12 Si 0.900 3.100 13 H -0.277 1.277 14 H -0.290 1.290 15 H -0.283 1.283 16 C 0.129 3.871 17 C -0.193 4.193 18 C -0.230 4.230 19 N -0.249 5.249 20 N -0.109 5.109 21 H 0.076 0.924 22 H 0.062 0.938 23 H 0.073 0.927 24 H 0.090 0.910 25 H 0.098 0.902 26 H 0.177 0.823 27 H 0.115 0.885 28 H 0.046 0.954 29 H 0.258 0.742 30 H 0.088 0.912 31 H 0.099 0.901 32 H 0.074 0.926 33 H 0.070 0.930 34 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.737 -13.276 3.288 14.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.005 4.005 3 N -0.100 5.100 4 C -0.223 4.223 5 C -0.138 4.138 6 C 0.089 3.911 7 N -0.253 5.253 8 C -0.388 4.388 9 H 0.075 0.925 10 C -0.174 4.174 11 N -0.530 5.530 12 Si 0.729 3.271 13 H -0.203 1.203 14 H -0.215 1.215 15 H -0.209 1.209 16 C 0.019 3.981 17 C -0.232 4.232 18 C -0.271 4.271 19 N -0.116 5.116 20 N -0.088 5.088 21 H 0.095 0.905 22 H 0.081 0.919 23 H 0.092 0.908 24 H 0.109 0.891 25 H 0.116 0.884 26 H 0.194 0.806 27 H 0.132 0.868 28 H 0.065 0.935 29 H 0.068 0.932 30 H 0.106 0.894 31 H 0.118 0.882 32 H 0.092 0.908 33 H 0.088 0.912 34 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -4.726 -12.760 2.068 13.764 hybrid contribution 0.617 -0.164 0.023 0.639 sum -4.109 -12.925 2.092 13.722 Atomic orbital electron populations 1.22053 0.93323 1.02958 1.03956 1.21858 0.96387 0.77888 1.04358 1.47316 1.31683 1.11319 1.19645 1.23350 1.02126 0.96380 1.00476 1.23801 0.99342 0.95404 0.95287 1.19421 0.83758 0.96937 0.90937 1.43270 1.03693 1.41698 1.36630 1.18762 1.31248 0.92801 0.95983 0.92452 1.25119 0.99774 0.96138 0.96415 1.69840 1.45514 1.13363 1.24264 0.86413 0.78100 0.78663 0.83895 1.20265 1.21549 1.20937 1.21112 0.87833 0.95734 0.93394 1.23055 0.95839 0.99678 1.04644 1.23340 1.08724 0.93563 1.01428 1.75137 1.08262 1.14644 1.13588 1.78188 1.21916 0.93518 1.15195 0.90536 0.91888 0.90803 0.89146 0.88401 0.80592 0.86794 0.93518 0.93193 0.89393 0.88233 0.90801 0.91162 0.90003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.51 10.04 37.16 0.37 -1.14 16 2 C 0.12 1.22 7.18 -4.04 -0.03 1.19 16 3 N -0.30 -5.01 3.44 -61.26 -0.21 -5.22 16 4 C -0.07 -1.27 11.50 -17.04 -0.20 -1.47 16 5 C 0.00 0.05 6.83 -82.78 -0.57 -0.52 16 6 C 0.22 5.14 5.89 -5.20 -0.03 5.11 16 7 N -0.54 -13.40 2.76 -167.03 -0.46 -13.86 16 8 C -0.26 -7.17 8.04 -15.06 -0.12 -7.29 16 9 H 0.06 1.64 7.23 -52.48 -0.38 1.26 16 10 C 0.03 0.74 4.97 -17.43 -0.09 0.66 16 11 N -0.89 -25.58 11.45 55.49 0.64 -24.94 16 12 Si 0.90 22.75 29.60 -169.99 -5.03 17.72 16 13 H -0.28 -7.21 7.11 56.52 0.40 -6.81 16 14 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 15 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 16 C 0.13 2.74 6.61 -67.93 -0.45 2.29 16 17 C -0.19 -3.91 9.81 -26.73 -0.26 -4.17 16 18 C -0.23 -4.51 10.09 -26.73 -0.27 -4.78 16 19 N -0.25 -6.03 12.41 33.29 0.41 -5.62 16 20 N -0.11 -2.27 12.91 60.35 0.78 -1.49 16 21 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 22 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 23 H 0.07 0.81 8.12 -51.92 -0.42 0.38 16 24 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 25 H 0.10 0.73 8.07 -51.93 -0.42 0.31 16 26 H 0.18 2.35 8.06 -52.49 -0.42 1.93 16 27 H 0.11 3.09 5.52 -51.93 -0.29 2.81 16 28 H 0.05 0.97 8.04 -51.93 -0.42 0.55 16 29 H 0.26 7.21 8.32 -40.82 -0.34 6.87 16 30 H 0.09 1.66 8.10 -51.93 -0.42 1.24 16 31 H 0.10 2.25 6.95 -51.93 -0.36 1.89 16 32 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 33 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.08 1.79 8.01 -51.93 -0.42 1.38 16 LS Contribution 291.98 15.07 4.40 4.40 Total: -1.00 -32.57 291.98 -5.91 -38.48 By element: Atomic # 1 Polarization: 5.46 SS G_CDS: -4.79 Total: 0.67 kcal Atomic # 6 Polarization: -8.49 SS G_CDS: -1.64 Total: -10.13 kcal Atomic # 7 Polarization: -52.30 SS G_CDS: 1.16 Total: -51.14 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -5.03 Total: 17.72 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -32.57 -5.91 -38.48 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883999782.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 186.525 kcal (2) G-P(sol) polarization free energy of solvation -32.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 153.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.478 kcal (6) G-S(sol) free energy of system = (1) + (5) 148.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds