Wall clock time and date at job start Sun Mar 29 2020 21:36:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46500 * 109.46818 * 2 1 4 4 C 1.35322 * 125.86559 * 124.99551 * 3 2 1 5 5 C 1.35354 * 106.17325 * 179.97438 * 4 3 2 6 6 C 1.50695 * 126.74919 * 179.97438 * 5 4 3 7 7 N 1.46494 * 109.47281 * 95.00678 * 6 5 4 8 8 C 1.36938 * 120.00076 * 89.99653 * 7 6 5 9 9 H 1.08009 * 120.00162 * 218.05680 * 8 7 6 10 10 C 1.38807 * 120.00119 * 38.05707 * 8 7 6 11 11 N 1.31615 * 119.99749 * 20.57348 * 10 8 7 12 12 Si 1.86806 * 120.00005 * 200.57333 * 10 8 7 13 13 H 1.48495 * 109.47243 * 60.00210 * 12 10 8 14 14 H 1.48498 * 109.46909 * 180.02562 * 12 10 8 15 15 H 1.48504 * 109.46872 * 299.99793 * 12 10 8 16 16 C 1.46499 * 120.00117 * 270.00088 * 7 6 5 17 17 C 1.52996 * 117.50086 * 193.91893 * 16 7 6 18 18 C 1.52997 * 117.50415 * 125.29240 * 16 7 6 19 19 N 1.33778 * 106.49593 * 0.02562 * 5 4 3 20 20 N 1.28632 * 108.88328 * 359.97438 * 19 5 4 21 21 H 1.09004 * 109.47503 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.47424 * 300.00423 * 1 2 3 23 23 H 1.09010 * 109.47063 * 60.00444 * 1 2 3 24 24 H 1.08997 * 109.47424 * 239.99577 * 2 1 3 25 25 H 1.08997 * 109.46835 * 119.99810 * 2 1 3 26 26 H 1.07997 * 126.91126 * 359.71636 * 4 3 2 27 27 H 1.09005 * 109.47174 * 215.00437 * 6 5 4 28 28 H 1.08998 * 109.47629 * 335.00436 * 6 5 4 29 29 H 0.97008 * 119.99807 * 174.96080 * 11 10 8 30 30 H 1.09003 * 115.54477 * 339.62250 * 16 7 6 31 31 H 1.09001 * 117.50133 * 359.97438 * 17 16 7 32 32 H 1.09005 * 117.50205 * 145.01921 * 17 16 7 33 33 H 1.09003 * 117.50630 * 214.98137 * 18 16 7 34 34 H 1.09001 * 117.49594 * 359.97438 * 18 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.8755 1.9191 0.8984 5 6 3.0540 3.2077 0.5244 6 6 3.9227 4.2325 1.2070 7 7 5.2353 4.2705 0.5575 8 6 5.4547 5.1202 -0.4937 9 1 6.0653 4.8029 -1.3263 10 6 4.8926 6.3893 -0.4894 11 7 4.5047 6.9333 0.6446 12 14 4.6867 7.3252 -2.0929 13 1 3.8139 6.5494 -3.0103 14 1 4.0671 8.6466 -1.8188 15 1 6.0161 7.5238 -2.7243 16 6 6.3132 3.3995 1.0326 17 6 7.7324 3.7035 0.5488 18 6 6.9847 2.4832 0.0078 19 7 2.3067 3.3927 -0.5697 20 7 1.7058 2.2916 -0.8545 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3634 0.5139 0.8899 23 1 -0.3634 0.5138 -0.8901 24 1 1.8934 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 3.3234 1.4216 1.7458 27 1 3.4529 5.2134 1.1343 28 1 4.0443 3.9648 2.2565 29 1 4.1798 7.8473 0.6579 30 1 6.1977 3.0197 2.0478 31 1 7.8642 4.5515 -0.1234 32 1 8.5511 3.5240 1.2457 33 1 7.3115 1.5008 0.3487 34 1 6.6243 2.5282 -1.0199 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000883999782.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:48 Heat of formation + Delta-G solvation = 126.574217 kcal Electronic energy + Delta-G solvation = -16897.140806 eV Core-core repulsion = 14254.323926 eV Total energy + Delta-G solvation = -2642.816880 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.133 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -43.93052 -38.72694 -36.33646 -35.26315 -33.23552 -31.62122 -31.16174 -27.64745 -25.48624 -25.39198 -22.92156 -22.51085 -21.86059 -21.30834 -18.53667 -17.83438 -17.18083 -17.15199 -16.20571 -15.75742 -15.59317 -15.29694 -14.64703 -14.44924 -13.66812 -13.54750 -13.21294 -12.98351 -12.88919 -12.72616 -12.46332 -12.30528 -12.18375 -12.14958 -11.93342 -11.43311 -11.30483 -10.95425 -10.75702 -10.40089 -9.89578 -8.42059 -7.84591 -5.42699 0.86843 1.38717 1.45756 1.52293 1.71831 1.82064 2.49365 3.20940 3.46809 3.63897 3.68814 3.85689 4.02948 4.27236 4.35152 4.35338 4.45535 4.55008 4.59645 4.66032 4.78139 4.90904 4.96535 5.08785 5.19235 5.27153 5.37771 5.47833 5.58757 5.67011 5.75311 5.96433 6.49892 7.17702 7.80856 7.88853 8.34855 9.12836 Molecular weight = 236.13amu Principal moments of inertia in cm(-1) A = 0.022591 B = 0.008728 C = 0.007073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.116921 B = 3207.378788 C = 3957.724172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.102 3.898 3 N -0.287 5.287 4 C -0.042 4.042 5 C -0.032 4.032 6 C 0.222 3.778 7 N -0.555 5.555 8 C -0.254 4.254 9 H 0.039 0.961 10 C -0.017 4.017 11 N -0.910 5.910 12 Si 0.943 3.057 13 H -0.293 1.293 14 H -0.285 1.285 15 H -0.273 1.273 16 C 0.110 3.890 17 C -0.194 4.194 18 C -0.209 4.209 19 N -0.312 5.312 20 N -0.133 5.133 21 H 0.114 0.886 22 H 0.055 0.945 23 H 0.048 0.952 24 H 0.104 0.896 25 H 0.142 0.858 26 H 0.227 0.773 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.254 0.746 30 H 0.122 0.878 31 H 0.065 0.935 32 H 0.108 0.892 33 H 0.110 0.890 34 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.262 -16.470 4.717 17.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.017 4.017 3 N -0.083 5.083 4 C -0.194 4.194 5 C -0.174 4.174 6 C 0.094 3.906 7 N -0.271 5.271 8 C -0.384 4.384 9 H 0.056 0.944 10 C -0.216 4.216 11 N -0.553 5.553 12 Si 0.772 3.228 13 H -0.220 1.220 14 H -0.211 1.211 15 H -0.199 1.199 16 C 0.002 3.998 17 C -0.233 4.233 18 C -0.250 4.250 19 N -0.178 5.178 20 N -0.112 5.112 21 H 0.132 0.868 22 H 0.074 0.926 23 H 0.067 0.933 24 H 0.122 0.878 25 H 0.159 0.841 26 H 0.243 0.757 27 H 0.089 0.911 28 H 0.091 0.909 29 H 0.063 0.937 30 H 0.140 0.860 31 H 0.084 0.916 32 H 0.126 0.874 33 H 0.128 0.872 34 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -4.261 -15.988 3.474 16.907 hybrid contribution 0.443 0.629 -0.395 0.865 sum -3.817 -15.360 3.079 16.124 Atomic orbital electron populations 1.22044 0.92521 1.04889 1.02366 1.22515 0.97140 0.74779 1.07221 1.47820 1.30031 1.12629 1.17848 1.23835 1.00302 0.94676 1.00616 1.23589 1.00654 0.97244 0.95896 1.19171 0.83307 0.95699 0.92380 1.43402 1.05376 1.42035 1.36299 1.18731 1.30140 0.93104 0.96472 0.94350 1.25592 1.00623 0.97089 0.98254 1.69932 1.46899 1.13277 1.25213 0.85732 0.77973 0.77700 0.81418 1.22029 1.21102 1.19881 1.21461 0.87148 0.95884 0.95285 1.23059 0.96569 0.98982 1.04693 1.23253 1.07349 0.95081 0.99320 1.75056 1.10254 1.16901 1.15570 1.78062 1.22615 0.93806 1.16684 0.86797 0.92600 0.93281 0.87757 0.84052 0.75699 0.91066 0.90911 0.93658 0.86009 0.91629 0.87391 0.87200 0.93123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.46 10.04 71.98 0.72 -1.74 16 2 C 0.10 1.70 7.18 86.38 0.62 2.32 16 3 N -0.29 -8.75 3.44 -347.74 -1.20 -9.95 16 4 C -0.04 -1.34 11.50 83.49 0.96 -0.38 16 5 C -0.03 -1.41 6.83 41.59 0.28 -1.12 16 6 C 0.22 10.50 5.89 85.63 0.50 11.01 16 7 N -0.55 -27.64 2.76 -682.37 -1.89 -29.52 16 8 C -0.25 -14.47 8.04 84.03 0.68 -13.79 16 9 H 0.04 2.29 7.23 -2.91 -0.02 2.27 16 10 C -0.02 -1.01 4.97 84.86 0.42 -0.59 16 11 N -0.91 -54.12 11.45 21.65 0.25 -53.88 16 12 Si 0.94 48.39 29.60 68.60 2.03 50.43 16 13 H -0.29 -15.68 7.11 99.48 0.71 -14.97 16 14 H -0.29 -14.30 7.11 99.48 0.71 -13.60 16 15 H -0.27 -13.40 7.11 99.48 0.71 -12.70 16 16 C 0.11 4.45 6.61 44.99 0.30 4.75 16 17 C -0.19 -7.51 9.81 30.59 0.30 -7.21 16 18 C -0.21 -7.70 10.09 30.59 0.31 -7.39 16 19 N -0.31 -15.43 12.41 -48.60 -0.60 -16.03 16 20 N -0.13 -5.52 12.91 37.02 0.48 -5.04 16 21 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 22 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 23 H 0.05 1.01 8.12 -2.38 -0.02 0.99 16 24 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 25 H 0.14 1.20 8.07 -2.39 -0.02 1.19 16 26 H 0.23 4.66 8.06 -2.91 -0.02 4.64 16 27 H 0.07 4.01 5.52 -2.38 -0.01 4.00 16 28 H 0.07 2.93 8.04 -2.39 -0.02 2.91 16 29 H 0.25 14.70 8.32 -92.70 -0.77 13.93 16 30 H 0.12 4.07 8.10 -2.39 -0.02 4.05 16 31 H 0.07 2.99 6.95 -2.39 -0.02 2.97 16 32 H 0.11 3.41 8.14 -2.38 -0.02 3.39 16 33 H 0.11 3.18 8.14 -2.39 -0.02 3.16 16 34 H 0.05 2.18 8.01 -2.39 -0.02 2.16 16 Total: -1.00 -75.67 291.98 5.25 -70.42 By element: Atomic # 1 Polarization: 6.64 SS G_CDS: 1.08 Total: 7.72 kcal Atomic # 6 Polarization: -19.24 SS G_CDS: 5.10 Total: -14.15 kcal Atomic # 7 Polarization: -111.45 SS G_CDS: -2.96 Total: -114.41 kcal Atomic # 14 Polarization: 48.39 SS G_CDS: 2.03 Total: 50.43 kcal Total: -75.67 5.25 -70.42 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883999782.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 196.993 kcal (2) G-P(sol) polarization free energy of solvation -75.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.419 kcal (6) G-S(sol) free energy of system = (1) + (5) 126.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds