Wall clock time and date at job start Sun Mar 29 2020 21:41:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46499 * 119.99936 * 2 1 4 4 C 1.38623 * 119.99991 * 179.72156 * 2 1 3 5 5 C 1.39175 * 120.48704 * 5.00173 * 4 2 1 6 6 C 1.39125 * 118.26793 * 180.02562 * 5 4 2 7 7 N 1.38638 * 120.48408 * 179.97438 * 6 5 4 8 8 C 1.46492 * 119.99730 * 359.97438 * 7 6 5 9 9 C 1.53003 * 109.47035 * 179.97438 * 8 7 6 10 10 C 1.50695 * 109.47314 * 179.97438 * 9 8 7 11 11 H 1.08008 * 120.00144 * 0.02562 * 10 9 8 12 12 C 1.37879 * 120.00237 * 180.02562 * 10 9 8 13 13 N 1.31508 * 119.99793 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 120.00234 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47297 * 59.99504 * 14 12 10 16 16 H 1.48495 * 109.47279 * 180.02562 * 14 12 10 17 17 H 1.48508 * 109.47004 * 300.00040 * 14 12 10 18 18 N 1.33198 * 119.03128 * 359.97438 * 6 5 4 19 19 C 1.31726 * 120.88053 * 0.02562 * 18 6 5 20 20 N 1.31754 * 121.91473 * 359.70610 * 19 18 6 21 21 H 1.08999 * 109.46892 * 90.00398 * 1 2 3 22 22 H 1.09000 * 109.46803 * 209.99571 * 1 2 3 23 23 H 1.09000 * 109.47214 * 330.00364 * 1 2 3 24 24 H 1.09003 * 109.47269 * 89.99349 * 3 2 1 25 25 H 1.08994 * 109.47173 * 210.00167 * 3 2 1 26 26 H 1.09005 * 109.47077 * 330.00338 * 3 2 1 27 27 H 1.08000 * 120.86276 * 0.02562 * 5 4 2 28 28 H 0.96994 * 119.99682 * 179.97438 * 7 6 5 29 29 H 1.08998 * 109.47673 * 299.99829 * 8 7 6 30 30 H 1.09004 * 109.47177 * 60.00375 * 8 7 6 31 31 H 1.08994 * 109.47161 * 300.00057 * 9 8 7 32 32 H 1.09004 * 109.46664 * 60.00266 * 9 8 7 33 33 H 0.96998 * 120.00110 * 180.02562 * 13 12 10 34 34 H 1.08007 * 119.04146 * 179.97438 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1582 -1.2005 0.0058 5 6 1.4765 -2.4099 -0.0929 6 6 2.2181 -3.5870 -0.0819 7 7 1.5861 -4.8172 -0.1771 8 6 0.1270 -4.8844 -0.2897 9 6 -0.3108 -6.3476 -0.3798 10 6 -1.8117 -6.4168 -0.4950 11 1 -2.3951 -5.5079 -0.5035 12 6 -2.4403 -7.6403 -0.5896 13 7 -1.7300 -8.7470 -0.5787 14 14 -4.3008 -7.7260 -0.7331 15 1 -4.7369 -7.0032 -1.9548 16 1 -4.7257 -9.1462 -0.8192 17 1 -4.9189 -7.0964 0.4615 18 7 3.5441 -3.5147 0.0214 19 6 4.1526 -2.3500 0.1128 20 7 3.4865 -1.2133 0.1007 21 1 -0.3633 -0.0001 -1.0277 22 1 -0.3633 -0.8900 0.5138 23 1 -0.3633 0.8900 0.5138 24 1 2.3791 1.5835 1.0277 25 1 3.1499 1.1384 -0.5138 26 1 1.6084 2.0284 -0.5138 27 1 0.4000 -2.4339 -0.1758 28 1 2.1100 -5.6335 -0.1691 29 1 -0.3268 -4.4224 0.5871 30 1 -0.1930 -4.3539 -1.1865 31 1 0.1429 -6.8092 -1.2568 32 1 0.0093 -6.8785 0.5168 33 1 -2.1721 -9.6078 -0.6456 34 1 5.2292 -2.3260 0.1957 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893129077.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:07 Heat of formation + Delta-G solvation = 52.282750 kcal Electronic energy + Delta-G solvation = -16041.482781 eV Core-core repulsion = 13395.444381 eV Total energy + Delta-G solvation = -2646.038400 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.133 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.51339 -37.16231 -36.02258 -33.32027 -31.94775 -30.74224 -29.13950 -28.00127 -25.48388 -24.94336 -23.08184 -21.26576 -20.91455 -17.83097 -17.33442 -16.37503 -15.43665 -15.19899 -14.97436 -14.74729 -14.47348 -14.43973 -13.76423 -13.54536 -13.51794 -12.67630 -12.30511 -12.26873 -12.09637 -11.43123 -11.31081 -10.94640 -10.70663 -10.42811 -10.18337 -9.80590 -9.69139 -9.38102 -8.84388 -8.48844 -7.90692 -7.56593 -6.13585 -4.17810 1.59312 1.95729 2.90202 3.26544 3.31468 3.32777 3.62778 4.36362 4.37133 4.58391 4.88366 5.12335 5.19741 5.23247 5.24630 5.43272 5.55392 5.60861 5.73694 5.78485 5.91403 6.08446 6.16111 6.47903 6.58716 6.78196 7.14846 7.40351 7.46546 7.55607 7.80043 7.89797 8.07537 8.24902 8.76377 8.87567 9.47154 10.97948 Molecular weight = 236.13amu Principal moments of inertia in cm(-1) A = 0.033120 B = 0.004948 C = 0.004326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.214695 B = 5657.556508 C = 6470.543597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.613 5.613 3 C 0.103 3.897 4 C 0.455 3.545 5 C -0.362 4.362 6 C 0.462 3.538 7 N -0.702 5.702 8 C 0.127 3.873 9 C 0.013 3.987 10 C -0.525 4.525 11 H 0.058 0.942 12 C 0.060 3.940 13 N -0.892 5.892 14 Si 0.898 3.102 15 H -0.276 1.276 16 H -0.286 1.286 17 H -0.276 1.276 18 N -0.617 5.617 19 C 0.368 3.632 20 N -0.622 5.622 21 H 0.054 0.946 22 H 0.074 0.926 23 H 0.070 0.930 24 H 0.046 0.954 25 H 0.077 0.923 26 H 0.061 0.939 27 H 0.137 0.863 28 H 0.406 0.594 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.024 0.976 32 H 0.024 0.976 33 H 0.264 0.736 34 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.078 16.263 1.090 17.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.327 5.327 3 C -0.040 4.040 4 C 0.217 3.783 5 C -0.396 4.396 6 C 0.220 3.780 7 N -0.330 5.330 8 C 0.004 3.996 9 C -0.024 4.024 10 C -0.564 4.564 11 H 0.076 0.924 12 C -0.142 4.142 13 N -0.530 5.530 14 Si 0.725 3.275 15 H -0.201 1.201 16 H -0.212 1.212 17 H -0.201 1.201 18 N -0.347 5.347 19 C 0.076 3.924 20 N -0.352 5.352 21 H 0.072 0.928 22 H 0.093 0.907 23 H 0.088 0.912 24 H 0.064 0.936 25 H 0.095 0.905 26 H 0.079 0.921 27 H 0.154 0.846 28 H 0.241 0.759 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.043 0.957 32 H 0.043 0.957 33 H 0.073 0.927 34 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 6.600 16.218 1.119 17.545 hybrid contribution -1.744 -0.481 -0.128 1.813 sum 4.856 15.737 0.990 16.499 Atomic orbital electron populations 1.21715 0.78277 1.03116 1.01756 1.46098 1.05239 1.03035 1.78339 1.21516 0.97421 0.83898 1.01162 1.18110 0.88294 0.85413 0.86527 1.21276 1.01760 0.91129 1.25399 1.18345 0.87876 0.86705 0.85105 1.45087 1.08208 1.04266 1.75421 1.21833 0.75780 1.02181 0.99811 1.19299 0.96824 0.88166 0.98147 1.20953 0.91157 0.92637 1.51618 0.92352 1.24996 0.98614 0.95654 0.94929 1.69944 1.35713 0.97656 1.49669 0.86569 0.85115 0.77075 0.78742 1.20109 1.21181 1.20115 1.67956 1.08917 1.30353 1.27459 1.24200 0.99698 0.81316 0.87142 1.67868 1.06683 1.32042 1.28637 0.92790 0.90730 0.91165 0.93570 0.90460 0.92067 0.84552 0.75881 0.92788 0.92762 0.95741 0.95743 0.92675 0.79472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.94 10.10 59.85 0.60 1.54 16 2 N -0.61 -7.69 3.38 -189.55 -0.64 -8.33 16 3 C 0.10 1.02 10.43 59.85 0.62 1.64 16 4 C 0.45 7.08 7.38 -154.71 -1.14 5.94 16 5 C -0.36 -6.04 8.47 -38.90 -0.33 -6.37 16 6 C 0.46 8.33 7.70 -154.69 -1.19 7.14 16 7 N -0.70 -13.00 5.71 -60.33 -0.34 -13.34 16 8 C 0.13 2.53 4.86 -4.04 -0.02 2.51 16 9 C 0.01 0.32 5.09 -27.88 -0.14 0.18 16 10 C -0.52 -14.10 9.11 -34.44 -0.31 -14.41 16 11 H 0.06 1.50 7.74 -52.48 -0.41 1.09 16 12 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 13 N -0.89 -25.89 13.29 55.43 0.74 -25.15 16 14 Si 0.90 20.85 29.54 -169.99 -5.02 15.83 16 15 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 16 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 17 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 18 N -0.62 -10.66 10.47 -13.88 -0.15 -10.81 16 19 C 0.37 5.50 12.28 -92.25 -1.13 4.36 16 20 N -0.62 -9.63 9.31 -13.88 -0.13 -9.76 16 21 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 22 H 0.07 0.79 6.43 -51.93 -0.33 0.46 16 23 H 0.07 0.53 8.07 -51.93 -0.42 0.11 16 24 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.08 0.83 7.48 -51.93 -0.39 0.44 16 26 H 0.06 0.46 8.07 -51.93 -0.42 0.04 16 27 H 0.14 2.17 5.18 -52.49 -0.27 1.90 16 28 H 0.41 7.39 8.60 -40.82 -0.35 7.04 16 29 H 0.05 1.06 7.97 -51.93 -0.41 0.64 16 30 H 0.05 1.07 7.97 -51.93 -0.41 0.65 16 31 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 34 H 0.19 2.05 8.06 -52.48 -0.42 1.62 16 LS Contribution 290.33 15.07 4.38 4.38 Total: -1.00 -30.67 290.33 -8.97 -39.65 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: -4.67 Total: 3.43 kcal Atomic # 6 Polarization: 7.24 SS G_CDS: -3.14 Total: 4.10 kcal Atomic # 7 Polarization: -66.86 SS G_CDS: -0.52 Total: -67.39 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -30.67 -8.97 -39.65 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893129077.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.930 kcal (2) G-P(sol) polarization free energy of solvation -30.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.647 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds