Wall clock time and date at job start Sun Mar 29 2020 21:41:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46499 * 119.99936 * 2 1 4 4 C 1.38623 * 119.99991 * 179.72156 * 2 1 3 5 5 C 1.39175 * 120.48704 * 5.00173 * 4 2 1 6 6 C 1.39125 * 118.26793 * 180.02562 * 5 4 2 7 7 N 1.38638 * 120.48408 * 179.97438 * 6 5 4 8 8 C 1.46492 * 119.99730 * 359.97438 * 7 6 5 9 9 C 1.53003 * 109.47035 * 179.97438 * 8 7 6 10 10 C 1.50695 * 109.47314 * 179.97438 * 9 8 7 11 11 H 1.08008 * 120.00144 * 0.02562 * 10 9 8 12 12 C 1.37879 * 120.00237 * 180.02562 * 10 9 8 13 13 N 1.31508 * 119.99793 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 120.00234 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47297 * 59.99504 * 14 12 10 16 16 H 1.48495 * 109.47279 * 180.02562 * 14 12 10 17 17 H 1.48508 * 109.47004 * 300.00040 * 14 12 10 18 18 N 1.33198 * 119.03128 * 359.97438 * 6 5 4 19 19 C 1.31726 * 120.88053 * 0.02562 * 18 6 5 20 20 N 1.31754 * 121.91473 * 359.70610 * 19 18 6 21 21 H 1.08999 * 109.46892 * 90.00398 * 1 2 3 22 22 H 1.09000 * 109.46803 * 209.99571 * 1 2 3 23 23 H 1.09000 * 109.47214 * 330.00364 * 1 2 3 24 24 H 1.09003 * 109.47269 * 89.99349 * 3 2 1 25 25 H 1.08994 * 109.47173 * 210.00167 * 3 2 1 26 26 H 1.09005 * 109.47077 * 330.00338 * 3 2 1 27 27 H 1.08000 * 120.86276 * 0.02562 * 5 4 2 28 28 H 0.96994 * 119.99682 * 179.97438 * 7 6 5 29 29 H 1.08998 * 109.47673 * 299.99829 * 8 7 6 30 30 H 1.09004 * 109.47177 * 60.00375 * 8 7 6 31 31 H 1.08994 * 109.47161 * 300.00057 * 9 8 7 32 32 H 1.09004 * 109.46664 * 60.00266 * 9 8 7 33 33 H 0.96998 * 120.00110 * 180.02562 * 13 12 10 34 34 H 1.08007 * 119.04146 * 179.97438 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1582 -1.2005 0.0058 5 6 1.4765 -2.4099 -0.0929 6 6 2.2181 -3.5870 -0.0819 7 7 1.5861 -4.8172 -0.1771 8 6 0.1270 -4.8844 -0.2897 9 6 -0.3108 -6.3476 -0.3798 10 6 -1.8117 -6.4168 -0.4950 11 1 -2.3951 -5.5079 -0.5035 12 6 -2.4403 -7.6403 -0.5896 13 7 -1.7300 -8.7470 -0.5787 14 14 -4.3008 -7.7260 -0.7331 15 1 -4.7369 -7.0032 -1.9548 16 1 -4.7257 -9.1462 -0.8192 17 1 -4.9189 -7.0964 0.4615 18 7 3.5441 -3.5147 0.0214 19 6 4.1526 -2.3500 0.1128 20 7 3.4865 -1.2133 0.1007 21 1 -0.3633 -0.0001 -1.0277 22 1 -0.3633 -0.8900 0.5138 23 1 -0.3633 0.8900 0.5138 24 1 2.3791 1.5835 1.0277 25 1 3.1499 1.1384 -0.5138 26 1 1.6084 2.0284 -0.5138 27 1 0.4000 -2.4339 -0.1758 28 1 2.1100 -5.6335 -0.1691 29 1 -0.3268 -4.4224 0.5871 30 1 -0.1930 -4.3539 -1.1865 31 1 0.1429 -6.8092 -1.2568 32 1 0.0093 -6.8785 0.5168 33 1 -2.1721 -9.6078 -0.6456 34 1 5.2292 -2.3260 0.1957 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000893129077.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:06 Heat of formation + Delta-G solvation = 34.115695 kcal Electronic energy + Delta-G solvation = -16042.270563 eV Core-core repulsion = 13395.444381 eV Total energy + Delta-G solvation = -2646.826182 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.133 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.72486 -38.31835 -37.38465 -35.21333 -33.35708 -32.10633 -30.65833 -28.96431 -26.75089 -26.49299 -24.47438 -22.66237 -22.40489 -19.15321 -18.60459 -18.24017 -16.58326 -16.51288 -16.32122 -16.14536 -15.91107 -15.83820 -14.96460 -14.86219 -14.82639 -14.22087 -13.40880 -13.24537 -13.13141 -13.07562 -12.87659 -12.59067 -12.51940 -11.90433 -11.62861 -11.47221 -11.33591 -11.16104 -10.57644 -10.08939 -9.12522 -8.77870 -8.23174 -6.34837 0.38471 0.68647 1.43209 1.45776 1.53605 1.92984 2.20442 2.45230 3.12127 3.13389 3.52997 3.79570 4.06980 4.31491 4.36566 4.45185 4.47753 4.52429 4.56697 4.70592 4.81056 4.82890 4.91354 4.98318 5.27787 5.42839 5.55630 5.67806 5.76568 5.95607 6.14397 6.31930 6.54800 6.74792 6.82215 7.35118 7.53372 8.89082 Molecular weight = 236.13amu Principal moments of inertia in cm(-1) A = 0.033120 B = 0.004948 C = 0.004326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.214695 B = 5657.556508 C = 6470.543597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.611 5.611 3 C 0.100 3.900 4 C 0.448 3.552 5 C -0.374 4.374 6 C 0.446 3.554 7 N -0.709 5.709 8 C 0.151 3.849 9 C 0.020 3.980 10 C -0.542 4.542 11 H 0.069 0.931 12 C 0.003 3.997 13 N -0.931 5.931 14 Si 0.968 3.032 15 H -0.265 1.265 16 H -0.286 1.286 17 H -0.265 1.265 18 N -0.637 5.637 19 C 0.367 3.633 20 N -0.625 5.625 21 H 0.061 0.939 22 H 0.064 0.936 23 H 0.099 0.901 24 H 0.053 0.947 25 H 0.067 0.933 26 H 0.090 0.910 27 H 0.140 0.860 28 H 0.403 0.597 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.001 0.999 32 H 0.001 0.999 33 H 0.265 0.735 34 H 0.225 0.775 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.307 18.500 1.123 19.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.324 5.324 3 C -0.042 4.042 4 C 0.207 3.793 5 C -0.408 4.408 6 C 0.205 3.795 7 N -0.338 5.338 8 C 0.027 3.973 9 C -0.018 4.018 10 C -0.581 4.581 11 H 0.088 0.912 12 C -0.195 4.195 13 N -0.571 5.571 14 Si 0.793 3.207 15 H -0.190 1.190 16 H -0.212 1.212 17 H -0.190 1.190 18 N -0.367 5.367 19 C 0.076 3.924 20 N -0.355 5.355 21 H 0.080 0.920 22 H 0.083 0.917 23 H 0.118 0.882 24 H 0.072 0.928 25 H 0.085 0.915 26 H 0.108 0.892 27 H 0.158 0.842 28 H 0.239 0.761 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.019 0.981 32 H 0.019 0.981 33 H 0.073 0.927 34 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 5.831 18.523 1.154 19.454 hybrid contribution -1.424 -1.052 -0.128 1.775 sum 4.407 17.471 1.026 18.048 Atomic orbital electron populations 1.21916 0.76801 1.04105 1.02568 1.46466 1.06366 1.02852 1.76708 1.21685 0.97352 0.83265 1.01917 1.18389 0.88543 0.86303 0.86017 1.21352 1.01982 0.91278 1.26197 1.18505 0.88573 0.86565 0.85838 1.44875 1.07448 1.04763 1.76722 1.21385 0.76869 0.98854 1.00184 1.19127 0.96046 0.90749 0.95850 1.21430 0.92437 0.93185 1.51030 0.91244 1.25952 1.03800 0.95275 0.94498 1.70084 1.37839 0.98267 1.50905 0.85447 0.78903 0.77089 0.79302 1.19003 1.21151 1.18997 1.67977 1.08659 1.31601 1.28467 1.24968 1.01189 0.80565 0.85681 1.67992 1.06670 1.32079 1.28753 0.92014 0.91722 0.88224 0.92849 0.91466 0.89160 0.84219 0.76139 0.92300 0.92346 0.98087 0.98074 0.92655 0.75891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.53 10.10 127.77 1.29 2.82 16 2 N -0.61 -13.93 3.38 -753.61 -2.55 -16.47 16 3 C 0.10 1.69 10.43 127.77 1.33 3.02 16 4 C 0.45 13.31 7.38 132.97 0.98 14.30 16 5 C -0.37 -12.25 8.47 22.71 0.19 -12.06 16 6 C 0.45 16.05 7.70 132.95 1.02 17.07 16 7 N -0.71 -26.74 5.71 -344.80 -1.97 -28.71 16 8 C 0.15 6.06 4.86 86.38 0.42 6.48 16 9 C 0.02 1.00 5.09 29.85 0.15 1.15 16 10 C -0.54 -29.27 9.11 25.60 0.23 -29.04 16 11 H 0.07 3.51 7.74 -2.91 -0.02 3.48 16 12 C 0.00 0.18 5.46 84.66 0.46 0.64 16 13 N -0.93 -55.10 13.29 21.45 0.28 -54.81 16 14 Si 0.97 42.50 29.54 68.60 2.03 44.53 16 15 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 16 H -0.29 -12.43 7.11 99.48 0.71 -11.73 16 17 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 18 N -0.64 -21.70 10.47 -197.83 -2.07 -23.77 16 19 C 0.37 10.43 12.28 180.92 2.22 12.65 16 20 N -0.62 -18.34 9.31 -197.82 -1.84 -20.18 16 21 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 22 H 0.06 1.27 6.43 -2.39 -0.02 1.25 16 23 H 0.10 1.15 8.07 -2.39 -0.02 1.13 16 24 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 25 H 0.07 1.29 7.48 -2.39 -0.02 1.28 16 26 H 0.09 1.02 8.07 -2.38 -0.02 1.00 16 27 H 0.14 4.35 5.18 -2.91 -0.02 4.33 16 28 H 0.40 15.25 8.60 -92.71 -0.80 14.45 16 29 H 0.06 2.30 7.97 -2.39 -0.02 2.28 16 30 H 0.06 2.29 7.97 -2.38 -0.02 2.27 16 31 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 32 H 0.00 0.05 8.14 -2.38 -0.02 0.03 16 33 H 0.26 14.79 8.31 -92.71 -0.77 14.02 16 34 H 0.23 4.37 8.06 -2.91 -0.02 4.34 16 Total: -1.00 -65.75 290.33 2.50 -63.25 By element: Atomic # 1 Polarization: 18.83 SS G_CDS: 0.30 Total: 19.13 kcal Atomic # 6 Polarization: 8.73 SS G_CDS: 8.31 Total: 17.04 kcal Atomic # 7 Polarization: -135.80 SS G_CDS: -8.14 Total: -143.94 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.53 kcal Total: -65.75 2.50 -63.25 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893129077.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.365 kcal (2) G-P(sol) polarization free energy of solvation -65.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.250 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds