Wall clock time and date at job start Sun Mar 29 2020 22:04:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17407 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46505 * 109.47176 * 50.58720 * 3 2 1 5 5 C 1.36944 * 119.99672 * 264.21358 * 4 3 2 6 6 H 1.07995 * 119.99681 * 192.40369 * 5 4 3 7 7 C 1.38805 * 120.00049 * 12.40649 * 5 4 3 8 8 N 1.31627 * 120.00280 * 22.00999 * 7 5 4 9 9 Si 1.86801 * 119.99978 * 202.00692 * 7 5 4 10 10 H 1.48500 * 109.46893 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47216 * 120.00224 * 9 7 5 12 12 H 1.48505 * 109.46951 * 240.00176 * 9 7 5 13 13 C 1.46500 * 120.00192 * 84.21305 * 4 3 2 14 14 C 1.52992 * 109.47156 * 85.29194 * 13 4 3 15 15 C 1.53118 * 109.52493 * 185.21550 * 14 13 4 16 16 C 1.53035 * 109.28099 * 182.43835 * 15 14 13 17 17 N 1.46847 * 109.51946 * 59.18169 * 16 15 14 18 18 C 1.46901 * 111.00182 * 174.15732 * 17 16 15 19 19 C 1.46837 * 111.20255 * 298.25806 * 17 16 15 20 20 C 1.53037 * 109.52521 * 61.74219 * 19 17 16 21 21 H 4.40645 * 5.51464 * 180.02562 * 4 1 2 22 22 H 1.09000 * 109.47076 * 290.58449 * 3 2 1 23 23 H 1.08999 * 109.46759 * 170.58577 * 3 2 1 24 24 H 0.96993 * 120.00036 * 180.02562 * 8 7 5 25 25 H 1.09001 * 109.46876 * 325.29286 * 13 4 3 26 26 H 1.09003 * 109.46712 * 205.29797 * 13 4 3 27 27 H 1.09000 * 109.57898 * 305.37662 * 14 13 4 28 28 H 1.09005 * 109.49658 * 62.50341 * 15 14 13 29 29 H 1.09003 * 109.53891 * 302.40826 * 15 14 13 30 30 H 1.08996 * 109.46718 * 299.16818 * 16 15 14 31 31 H 1.08995 * 109.46580 * 179.19670 * 16 15 14 32 32 H 1.09004 * 109.46914 * 60.00248 * 18 17 16 33 33 H 1.09002 * 109.47371 * 300.00343 * 18 17 16 34 34 H 1.08989 * 109.47535 * 180.02562 * 18 17 16 35 35 H 1.09002 * 109.46774 * 181.75723 * 19 17 16 36 36 H 1.09001 * 109.46388 * 301.72400 * 19 17 16 37 37 H 1.08997 * 109.50800 * 180.88631 * 20 19 17 38 38 H 1.08999 * 109.53636 * 60.78128 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1348 -0.8761 -1.0671 5 6 3.4764 -2.1721 -0.7859 6 1 4.0198 -2.7572 -1.5130 7 6 3.1240 -2.7336 0.4336 8 7 2.1286 -2.2257 1.1291 9 14 4.0625 -4.2103 1.0879 10 1 5.1273 -4.5869 0.1237 11 1 4.6770 -3.8667 2.3954 12 1 3.1289 -5.3517 1.2643 13 6 3.2582 -0.3664 -2.4351 14 6 4.6095 0.3319 -2.5992 15 6 4.6869 0.9774 -3.9855 16 6 6.0631 1.6218 -4.1667 17 7 7.1066 0.5984 -4.0246 18 6 8.4326 1.1527 -4.3290 19 6 7.0824 -0.0023 -2.6850 20 6 5.7366 -0.6952 -2.4595 21 1 -1.0498 -0.0001 -0.0004 22 1 3.0096 -0.3605 0.9621 23 1 3.0089 1.0147 -0.1681 24 1 1.8826 -2.6179 1.9814 25 1 2.4556 0.3445 -2.6317 26 1 3.1896 -1.1956 -3.1393 27 1 4.7193 1.0996 -1.8333 28 1 3.9133 1.7400 -4.0755 29 1 4.5379 0.2159 -4.7511 30 1 6.2055 2.3931 -3.4099 31 1 6.1266 2.0699 -5.1582 32 1 8.6503 1.9715 -3.6431 33 1 8.4446 1.5242 -5.3537 34 1 9.1866 0.3738 -4.2165 35 1 7.8861 -0.7338 -2.6002 36 1 7.2200 0.7766 -1.9350 37 1 5.7129 -1.1275 -1.4592 38 1 5.6040 -1.4839 -3.2001 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000897164070.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:06 Heat of formation + Delta-G solvation = 77.194902 kcal Electronic energy + Delta-G solvation = -17264.814166 eV Core-core repulsion = 14723.396382 eV Total energy + Delta-G solvation = -2541.417784 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -38.82999 -36.19738 -33.54689 -31.52709 -30.72663 -30.36752 -27.50287 -26.02555 -24.71869 -22.73817 -22.19645 -20.45152 -19.19103 -17.34179 -16.28008 -15.54883 -15.06297 -14.81075 -14.38993 -14.00841 -13.69094 -13.34871 -13.05364 -12.77381 -12.48682 -12.11990 -11.89237 -11.58632 -11.27823 -11.15520 -10.88925 -10.78696 -10.64254 -10.26040 -10.16702 -10.09678 -9.76876 -9.55998 -8.89733 -8.77420 -8.33283 -8.17236 -6.94379 -5.74515 -3.10657 3.39123 3.48071 3.49443 4.12272 4.19344 4.41357 4.57041 5.11544 5.18237 5.24755 5.37593 5.40066 5.53239 5.59753 5.74311 5.77311 5.83629 5.86868 5.89384 5.97859 6.12261 6.21910 6.27250 6.44906 6.58097 6.64210 6.74388 6.82932 7.00353 7.08854 7.27027 7.33275 7.38106 7.48702 7.80174 8.32986 9.15902 9.22084 9.84778 10.29961 11.30166 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.024283 B = 0.007767 C = 0.006178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.790239 B = 3604.024873 C = 4531.418083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.310 4.310 2 C -0.093 4.093 3 C 0.263 3.737 4 N -0.588 5.588 5 C -0.251 4.251 6 H 0.078 0.922 7 C -0.003 4.003 8 N -0.895 5.895 9 Si 0.895 3.105 10 H -0.278 1.278 11 H -0.290 1.290 12 H -0.293 1.293 13 C 0.155 3.845 14 C -0.104 4.104 15 C -0.111 4.111 16 C 0.060 3.940 17 N -0.544 5.544 18 C 0.026 3.974 19 C 0.055 3.945 20 C -0.102 4.102 21 H 0.190 0.810 22 H 0.106 0.894 23 H 0.032 0.968 24 H 0.252 0.748 25 H 0.033 0.967 26 H 0.049 0.951 27 H 0.058 0.942 28 H 0.060 0.940 29 H 0.067 0.933 30 H 0.028 0.972 31 H 0.066 0.934 32 H 0.020 0.980 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.067 0.933 36 H 0.027 0.973 37 H 0.088 0.912 38 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.868 7.383 -7.666 13.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.329 4.329 2 C -0.096 4.096 3 C 0.137 3.863 4 N -0.307 5.307 5 C -0.380 4.380 6 H 0.096 0.904 7 C -0.201 4.201 8 N -0.540 5.540 9 Si 0.726 3.274 10 H -0.203 1.203 11 H -0.217 1.217 12 H -0.221 1.221 13 C 0.028 3.972 14 C -0.126 4.126 15 C -0.150 4.150 16 C -0.068 4.068 17 N -0.269 5.269 18 C -0.123 4.123 19 C -0.072 4.072 20 C -0.140 4.140 21 H 0.207 0.793 22 H 0.124 0.876 23 H 0.050 0.950 24 H 0.063 0.937 25 H 0.051 0.949 26 H 0.068 0.932 27 H 0.076 0.924 28 H 0.079 0.921 29 H 0.086 0.914 30 H 0.046 0.954 31 H 0.084 0.916 32 H 0.038 0.962 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.046 0.954 37 H 0.107 0.893 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 7.747 6.922 -7.854 13.024 hybrid contribution 0.247 -0.270 1.034 1.097 sum 7.993 6.652 -6.820 12.436 Atomic orbital electron populations 1.24227 0.95401 1.07544 1.05730 1.24538 0.95477 0.94058 0.95552 1.17984 0.82499 0.90860 0.94929 1.44100 1.74565 1.09655 1.02411 1.19303 1.29135 0.88876 1.00657 0.90376 1.24827 0.97438 0.98486 0.99373 1.70159 1.25712 1.42814 1.15277 0.86318 0.79774 0.82435 0.78923 1.20291 1.21680 1.22069 1.20799 0.92846 0.96368 0.87191 1.21790 0.98211 0.97632 0.94929 1.21615 0.94816 0.99881 0.98643 1.22059 0.92322 0.92508 0.99951 1.61955 1.03635 1.32351 1.28968 1.22327 0.91089 0.98450 1.00405 1.22199 0.99650 0.97711 0.87645 1.21581 0.91439 0.97594 1.03360 0.79296 0.87615 0.95041 0.93726 0.94897 0.93206 0.92351 0.92105 0.91435 0.95399 0.91578 0.96155 0.91836 0.91682 0.91474 0.95445 0.89308 0.92080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.31 -7.22 19.25 29.55 0.57 -6.65 16 2 C -0.09 -2.31 11.87 -37.12 -0.44 -2.76 16 3 C 0.26 6.27 5.43 -6.83 -0.04 6.23 16 4 N -0.59 -14.02 2.31 -176.57 -0.41 -14.43 16 5 C -0.25 -6.54 8.12 -15.06 -0.12 -6.66 16 6 H 0.08 2.01 7.76 -52.49 -0.41 1.60 16 7 C 0.00 -0.09 4.92 -17.43 -0.09 -0.18 16 8 N -0.89 -25.42 9.37 55.49 0.52 -24.90 16 9 Si 0.90 21.38 29.61 -169.99 -5.03 16.35 16 10 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 11 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 12 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 13 C 0.15 3.11 5.14 -4.05 -0.02 3.09 16 14 C -0.10 -1.77 2.46 -90.50 -0.22 -2.00 16 15 C -0.11 -1.59 5.38 -26.65 -0.14 -1.73 16 16 C 0.06 0.78 5.46 -3.84 -0.02 0.76 16 17 N -0.54 -7.52 4.91 -242.97 -1.19 -8.71 16 18 C 0.03 0.29 9.59 60.07 0.58 0.86 16 19 C 0.06 0.82 5.46 -3.84 -0.02 0.80 16 20 C -0.10 -1.75 4.82 -26.65 -0.13 -1.88 16 21 H 0.19 3.69 7.80 -54.10 -0.42 3.26 16 22 H 0.11 2.77 6.07 -51.93 -0.32 2.45 16 23 H 0.03 0.67 8.07 -51.93 -0.42 0.25 16 24 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 25 H 0.03 0.65 8.11 -51.93 -0.42 0.23 16 26 H 0.05 1.02 8.00 -51.93 -0.42 0.61 16 27 H 0.06 1.04 8.10 -51.93 -0.42 0.62 16 28 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.07 0.77 8.12 -51.93 -0.42 0.34 16 32 H 0.02 0.22 8.14 -51.93 -0.42 -0.21 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.06 0.67 8.09 -51.93 -0.42 0.25 16 35 H 0.07 0.94 8.09 -51.93 -0.42 0.52 16 36 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.09 1.74 6.77 -51.93 -0.35 1.39 16 38 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 305.71 15.07 4.61 4.61 Total: -1.00 -28.70 305.71 -8.13 -36.83 By element: Atomic # 1 Polarization: 6.88 SS G_CDS: -6.53 Total: 0.35 kcal Atomic # 6 Polarization: -10.01 SS G_CDS: -0.10 Total: -10.10 kcal Atomic # 7 Polarization: -46.96 SS G_CDS: -1.08 Total: -48.04 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.03 Total: 16.35 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -28.70 -8.13 -36.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897164070.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.027 kcal (2) G-P(sol) polarization free energy of solvation -28.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.832 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds